Wall clock time and date at job start Tue Mar 31 2020 01:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40371 * 126.65082 * 2 1 4 4 C 1.35129 * 107.11420 * 180.30275 * 3 2 1 5 5 O 1.33928 * 108.76915 * 359.74692 * 4 3 2 6 6 C 1.34909 * 109.38702 * 0.02562 * 5 4 3 7 7 C 1.46660 * 125.99133 * 180.02562 * 6 5 4 8 8 O 1.21694 * 120.00180 * 180.02562 * 7 6 5 9 9 N 1.34773 * 119.99870 * 0.02562 * 7 6 5 10 10 C 1.47433 * 125.64840 * 5.20664 * 9 7 6 11 11 C 1.54907 * 104.83278 * 155.88997 * 10 9 7 12 12 C 1.55165 * 101.58175 * 37.00634 * 11 10 9 13 13 C 1.47022 * 125.65069 * 185.22312 * 9 7 6 14 14 H 1.08995 * 110.01324 * 300.53417 * 13 9 7 15 15 C 1.53009 * 109.87748 * 61.62630 * 13 9 7 16 16 N 1.46503 * 109.46705 * 183.44786 * 15 13 9 17 17 C 1.36934 * 119.99528 * 175.01629 * 16 15 13 18 18 H 1.07996 * 120.00729 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99743 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00072 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00048 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47318 * 179.97438 * 21 19 17 23 23 H 1.48492 * 109.47296 * 300.00151 * 21 19 17 24 24 H 1.48500 * 109.47149 * 60.00226 * 21 19 17 25 25 H 1.09002 * 109.46744 * 270.12972 * 1 2 3 26 26 H 1.08995 * 109.46763 * 30.12195 * 1 2 3 27 27 H 1.08998 * 109.47248 * 150.12554 * 1 2 3 28 28 H 1.07998 * 126.43949 * 0.05100 * 3 2 1 29 29 H 1.07997 * 125.61644 * 179.78250 * 4 3 2 30 30 H 1.08995 * 110.36629 * 37.04692 * 10 9 7 31 31 H 1.09002 * 110.45248 * 274.77576 * 10 9 7 32 32 H 1.09003 * 111.00302 * 278.93438 * 11 10 9 33 33 H 1.08997 * 111.00663 * 155.07883 * 11 10 9 34 34 H 1.08995 * 110.71601 * 206.13644 * 12 11 10 35 35 H 1.09005 * 110.71683 * 82.86038 * 12 11 10 36 36 H 1.08989 * 109.47064 * 63.44635 * 15 13 9 37 37 H 1.09000 * 109.47000 * 303.44216 * 15 13 9 38 38 H 0.97004 * 120.00046 * 355.01037 * 16 15 13 39 39 H 0.96997 * 119.99941 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6743 -0.0068 5 8 3.6005 -0.6649 -0.0054 6 6 2.3220 -1.0956 0.0018 7 6 1.8842 -2.4953 0.0061 8 8 0.6967 -2.7614 0.0121 9 7 2.7969 -3.4869 0.0033 10 6 4.2572 -3.3109 0.1049 11 6 4.7802 -4.6547 0.6707 12 6 3.8481 -5.6741 -0.0360 13 6 2.5015 -4.9233 -0.1018 14 1 1.8629 -5.2342 0.7250 15 6 1.8073 -5.2155 -1.4337 16 7 1.4434 -6.6333 -1.4938 17 6 0.7173 -7.1094 -2.5527 18 1 0.4126 -6.4398 -3.3433 19 6 0.3730 -8.4530 -2.6100 20 7 0.7438 -9.2691 -1.6462 21 14 -0.6181 -9.1024 -4.0541 22 1 -0.8524 -10.5584 -3.8789 23 1 -1.9220 -8.3948 -4.1178 24 1 0.1330 -8.8706 -5.3140 25 1 -0.3633 0.0023 1.0277 26 1 -0.3633 0.8889 -0.5157 27 1 -0.3633 -0.8911 -0.5119 28 1 2.0308 2.1595 0.0008 29 1 4.5047 1.2914 -0.0120 30 1 4.4943 -2.4942 0.7867 31 1 4.6872 -3.1202 -0.8784 32 1 4.6568 -4.6975 1.7529 33 1 5.8210 -4.8178 0.3909 34 1 3.7534 -6.5846 0.5556 35 1 4.2130 -5.9001 -1.0380 36 1 2.4831 -4.9787 -2.2552 37 1 0.9076 -4.6057 -1.5159 38 1 1.7168 -7.2348 -0.7835 39 1 0.5035 -10.2080 -1.6865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319048912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:04 Heat of formation + Delta-G solvation = -27.725446 kcal Electronic energy + Delta-G solvation = -21838.996181 eV Core-core repulsion = 18554.749663 eV Total energy + Delta-G solvation = -3284.246518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.68160 -41.11299 -38.76328 -36.47112 -35.09321 -33.59791 -32.77561 -31.29730 -30.29955 -28.60191 -26.78080 -25.28754 -24.03242 -22.90638 -22.46087 -21.28250 -20.34817 -19.31232 -18.44221 -17.86989 -17.31302 -17.05091 -16.51527 -16.21934 -15.51337 -15.29083 -15.08408 -14.99611 -14.67915 -14.12270 -14.11006 -13.85211 -13.83063 -13.69995 -13.48226 -13.09989 -12.94778 -12.79819 -12.74296 -12.25137 -12.08305 -11.92392 -11.81227 -11.63584 -11.23439 -10.97495 -10.66403 -9.93587 -9.49763 -9.07795 -7.99227 -5.29615 0.02666 1.42251 1.44176 1.48468 1.53660 1.56847 2.03885 2.09610 2.54112 3.32813 3.43662 3.58028 3.78262 3.81200 3.89836 3.95267 4.08875 4.23912 4.29217 4.44130 4.54416 4.61424 4.65861 4.72149 4.73428 4.84183 4.87521 4.97815 5.08526 5.09027 5.10169 5.21223 5.30202 5.34585 5.42494 5.49328 5.91724 6.21967 6.38955 6.92196 7.28903 7.98477 8.27784 9.23723 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022980 B = 0.004338 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.152848 B = 6452.517261 C = 7322.777741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.234 4.234 4 C 0.016 3.984 5 O -0.163 6.163 6 C -0.112 4.112 7 C 0.601 3.399 8 O -0.558 6.558 9 N -0.606 5.606 10 C 0.099 3.901 11 C -0.116 4.116 12 C -0.117 4.117 13 C 0.137 3.863 14 H 0.057 0.943 15 C 0.155 3.845 16 N -0.735 5.735 17 C -0.256 4.256 18 H 0.066 0.934 19 C -0.067 4.067 20 N -0.964 5.964 21 Si 0.977 3.023 22 H -0.288 1.288 23 H -0.282 1.282 24 H -0.275 1.275 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.055 0.945 28 H 0.184 0.816 29 H 0.261 0.739 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.016 0.984 37 H 0.005 0.995 38 H 0.378 0.622 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.289 22.327 6.307 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.253 4.253 4 C -0.053 4.053 5 O -0.059 6.059 6 C -0.163 4.163 7 C 0.392 3.608 8 O -0.439 6.439 9 N -0.338 5.338 10 C -0.022 4.022 11 C -0.154 4.154 12 C -0.156 4.156 13 C 0.033 3.967 14 H 0.075 0.925 15 C 0.027 3.973 16 N -0.379 5.379 17 C -0.387 4.387 18 H 0.084 0.916 19 C -0.260 4.260 20 N -0.614 5.614 21 Si 0.804 3.196 22 H -0.213 1.213 23 H -0.208 1.208 24 H -0.201 1.201 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.201 0.799 29 H 0.276 0.724 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.023 0.977 38 H 0.211 0.789 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.783 22.028 6.156 25.729 hybrid contribution -1.053 -0.779 -0.559 1.424 sum 10.730 21.249 5.596 24.453 Atomic orbital electron populations 1.20412 0.88564 1.03266 1.02973 1.20999 0.98011 0.92014 0.98866 1.22072 0.92282 1.00460 1.10492 1.25427 1.01353 0.79801 0.98767 1.84135 1.26869 1.24050 1.70855 1.21369 0.82895 0.93372 1.18695 1.16669 0.84668 0.82664 0.76802 1.90855 1.17155 1.82978 1.52885 1.48495 1.08689 1.05492 1.71097 1.22647 0.77310 0.99859 1.02376 1.22824 1.00423 0.91463 1.00700 1.22610 0.92131 0.98486 1.02324 1.21619 0.98433 0.80105 0.96495 0.92474 1.20894 0.95792 0.85586 0.95032 1.42285 1.65286 1.04381 1.25906 1.19511 1.26241 0.92965 0.99994 0.91589 1.25561 1.02793 0.96257 1.01348 1.69795 1.52329 1.04190 1.35099 0.85182 0.78539 0.76876 0.78964 1.21318 1.20830 1.20085 0.90511 0.88977 0.92635 0.79862 0.72370 0.88378 0.90365 0.89614 0.86536 0.89800 0.90752 0.96590 0.97717 0.78887 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.81 71.24 0.70 -1.68 16 2 C -0.10 -2.40 6.20 -19.74 -0.12 -2.52 16 3 C -0.23 -3.74 10.83 22.07 0.24 -3.50 16 4 C 0.02 0.20 12.08 67.10 0.81 1.01 16 5 O -0.16 -3.41 8.01 -4.97 -0.04 -3.45 16 6 C -0.11 -3.20 6.92 24.08 0.17 -3.04 16 7 C 0.60 21.87 7.55 86.44 0.65 22.52 16 8 O -0.56 -24.76 13.93 -4.33 -0.06 -24.82 16 9 N -0.61 -19.92 3.06 -792.72 -2.43 -22.35 16 10 C 0.10 2.24 5.99 86.85 0.52 2.76 16 11 C -0.12 -2.32 7.09 31.99 0.23 -2.09 16 12 C -0.12 -3.50 6.01 31.78 0.19 -3.31 16 13 C 0.14 5.19 2.94 45.34 0.13 5.33 16 14 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 15 C 0.15 7.34 5.64 86.38 0.49 7.82 16 16 N -0.73 -40.73 5.44 -343.45 -1.87 -42.60 16 17 C -0.26 -15.42 9.99 84.03 0.84 -14.58 16 18 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.96 -60.32 13.06 21.65 0.28 -60.03 16 21 Si 0.98 47.96 29.55 68.60 2.03 49.99 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 23 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.77 6.45 -2.39 -0.02 1.76 16 28 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 29 H 0.26 0.33 8.06 -2.91 -0.02 0.30 16 30 H 0.10 1.86 6.56 -2.39 -0.02 1.85 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.07 2.37 7.79 -2.38 -0.02 2.35 16 36 H 0.02 0.76 8.06 -2.39 -0.02 0.74 16 37 H 0.00 0.26 6.93 -2.39 -0.02 0.24 16 38 H 0.38 21.44 7.40 -92.71 -0.69 20.75 16 39 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -78.62 323.35 3.59 -75.03 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.37 Total: 23.03 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 5.31 Total: 5.20 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -4.02 Total: -124.98 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.10 Total: -28.27 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -78.62 3.59 -75.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319048912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.303 kcal (2) G-P(sol) polarization free energy of solvation -78.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds