Wall clock time and date at job start Tue Mar 31 2020 00:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34180 * 125.44144 * 2 1 4 4 C 1.47013 * 105.95644 * 180.02562 * 3 2 1 5 5 C 1.47382 * 127.19376 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99621 * 6.62867 * 5 4 3 7 7 N 1.34778 * 119.99818 * 186.64086 * 5 4 3 8 8 C 1.47420 * 125.65060 * 5.62122 * 7 5 4 9 9 C 1.55135 * 104.72142 * 155.82132 * 8 7 5 10 10 C 1.55151 * 101.48337 * 37.29761 * 9 8 7 11 11 C 1.47028 * 125.64455 * 185.93988 * 7 5 4 12 12 H 1.09005 * 109.87866 * 300.58691 * 11 7 5 13 13 C 1.52990 * 109.88438 * 61.59979 * 11 7 5 14 14 N 1.46500 * 109.47119 * 285.25251 * 13 11 7 15 15 C 1.36947 * 119.99994 * 172.45072 * 14 13 11 16 16 H 1.08002 * 119.99771 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00020 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00128 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99993 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47174 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47084 * 120.00125 * 19 17 15 22 22 H 1.48500 * 109.47142 * 239.99718 * 19 17 15 23 23 C 1.36422 * 105.61792 * 359.97438 * 4 3 2 24 24 O 1.33652 * 108.39113 * 359.73797 * 23 4 3 25 25 H 1.09001 * 109.47019 * 89.99612 * 1 2 3 26 26 H 1.09000 * 109.47095 * 330.00101 * 1 2 3 27 27 H 1.08996 * 109.47577 * 209.99962 * 1 2 3 28 28 H 1.07997 * 127.01966 * 0.02562 * 3 2 1 29 29 H 1.08998 * 110.37202 * 274.75279 * 8 7 5 30 30 H 1.08999 * 110.36627 * 37.07661 * 8 7 5 31 31 H 1.09000 * 111.19396 * 279.19649 * 9 8 7 32 32 H 1.09000 * 110.93930 * 155.28970 * 9 8 7 33 33 H 1.09004 * 110.71970 * 205.96775 * 10 9 8 34 34 H 1.09003 * 110.87415 * 82.76831 * 10 9 8 35 35 H 1.09002 * 109.47487 * 45.25037 * 13 11 7 36 36 H 1.08994 * 109.47173 * 165.25553 * 13 11 7 37 37 H 0.96994 * 120.00596 * 352.45755 * 14 13 11 38 38 H 0.96998 * 119.99882 * 180.02562 * 18 17 15 39 39 H 1.08000 * 125.80212 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 4.8359 2.6206 0.1200 7 7 6.1024 0.8138 -0.1369 8 6 6.3223 -0.6185 -0.4083 9 6 7.7223 -0.6832 -1.0735 10 6 8.4908 0.4082 -0.2827 11 6 7.4090 1.4798 -0.0320 12 1 7.4843 2.2683 -0.7809 13 6 7.5794 2.0737 1.3676 14 7 6.7570 3.2800 1.4896 15 6 6.6257 3.8993 2.7040 16 1 7.1288 3.4986 3.5717 17 6 5.8462 5.0419 2.8197 18 7 5.2327 5.5300 1.7623 19 14 5.6677 5.8870 4.4760 20 1 6.4516 5.1462 5.4967 21 1 6.1741 7.2796 4.3783 22 1 4.2359 5.9075 4.8695 23 6 3.5790 -0.7583 -0.0004 24 8 2.2852 -1.0935 0.0062 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8899 0.5138 28 1 1.9596 2.1229 0.0004 29 1 6.3151 -1.1864 0.5220 30 1 5.5609 -0.9966 -1.0905 31 1 7.6673 -0.4323 -2.1328 32 1 8.1771 -1.6633 -0.9294 33 1 9.3060 0.8158 -0.8808 34 1 8.8671 0.0120 0.6605 35 1 7.2654 1.3431 2.1131 36 1 8.6264 2.3301 1.5285 37 1 6.3055 3.6401 0.7104 38 1 4.6882 6.3287 1.8432 39 1 4.4103 -1.4477 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319064689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:13 Heat of formation + Delta-G solvation = 16.682906 kcal Electronic energy + Delta-G solvation = -22233.861091 eV Core-core repulsion = 18951.540263 eV Total energy + Delta-G solvation = -3282.320828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.38899 -39.63400 -36.84551 -34.28433 -32.89293 -32.36604 -31.16930 -30.80434 -28.75330 -26.55987 -25.15438 -23.94894 -22.46619 -21.40606 -20.74053 -20.45177 -18.77480 -17.02776 -16.67943 -16.41197 -16.02888 -15.88082 -14.90259 -14.37320 -13.94725 -13.52616 -13.47890 -13.25137 -13.16454 -13.05139 -12.90279 -12.73757 -12.52370 -12.29874 -11.82475 -11.61683 -11.46493 -11.14176 -11.03042 -10.69638 -10.59428 -10.44840 -9.88659 -9.52661 -9.45282 -9.00396 -8.64868 -8.42675 -8.08558 -6.56337 -5.43896 -2.72089 1.60593 2.28925 2.92214 3.35756 3.56712 3.61063 3.63841 3.93860 4.52199 4.59501 4.71745 4.81126 4.93666 4.99535 5.03681 5.31014 5.34483 5.37392 5.40550 5.52185 5.61025 5.69575 5.74399 5.82388 5.87579 5.96377 6.00104 6.08059 6.14882 6.25926 6.48810 6.57351 6.66691 6.86554 7.05540 7.15590 7.91296 8.02781 8.68676 8.94071 9.85876 10.51479 10.91563 11.76655 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.006858 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.382234 B = 4081.730422 C = 5890.275532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.027 4.027 3 C -0.156 4.156 4 C -0.204 4.204 5 C 0.579 3.421 6 O -0.456 6.456 7 N -0.616 5.616 8 C 0.088 3.912 9 C -0.131 4.131 10 C -0.124 4.124 11 C 0.132 3.868 12 H 0.075 0.925 13 C 0.145 3.855 14 N -0.723 5.723 15 C -0.238 4.238 16 H 0.061 0.939 17 C -0.011 4.011 18 N -0.914 5.914 19 Si 0.896 3.104 20 H -0.283 1.283 21 H -0.294 1.294 22 H -0.294 1.294 23 C -0.014 4.014 24 O -0.179 6.179 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.160 0.840 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.400 0.600 38 H 0.248 0.752 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 -18.218 -8.115 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 C -0.175 4.175 4 C -0.209 4.209 5 C 0.367 3.633 6 O -0.326 6.326 7 N -0.354 5.354 8 C -0.035 4.035 9 C -0.169 4.169 10 C -0.163 4.163 11 C 0.029 3.971 12 H 0.093 0.907 13 C 0.015 3.985 14 N -0.374 5.374 15 C -0.369 4.369 16 H 0.079 0.921 17 C -0.207 4.207 18 N -0.562 5.562 19 Si 0.728 3.272 20 H -0.209 1.209 21 H -0.221 1.221 22 H -0.222 1.222 23 C -0.083 4.083 24 O -0.076 6.076 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.177 0.823 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.242 0.758 38 H 0.058 0.942 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.622 -17.683 -7.888 19.539 hybrid contribution -0.074 0.684 0.887 1.123 sum -2.695 -16.999 -7.001 18.581 Atomic orbital electron populations 1.20279 0.84930 1.04061 1.03355 1.22249 0.93999 0.83780 1.07468 1.22580 0.90142 0.99845 1.04963 1.21629 0.94917 0.93089 1.11251 1.16944 0.80845 0.87321 0.78219 1.90940 1.84753 1.12407 1.44499 1.48263 1.05364 1.08356 1.73404 1.22581 0.97678 0.83950 0.99311 1.22789 0.94649 0.99546 0.99899 1.22634 0.97274 0.95522 1.00838 1.21866 0.81207 0.94546 0.99467 0.90721 1.21017 0.94851 0.90451 0.92138 1.42865 1.57103 1.26972 1.10497 1.19184 1.24194 1.05681 0.87886 0.92056 1.24696 1.00553 0.98922 0.96569 1.69773 1.35629 1.23632 1.27184 0.86276 0.77169 0.79457 0.84280 1.20871 1.22117 1.22185 1.25014 0.83956 0.95974 1.03320 1.83681 1.16625 1.35523 1.71799 0.90255 0.89222 0.90696 0.82277 0.91574 0.90696 0.90601 0.90084 0.90127 0.90338 0.96396 0.96490 0.75795 0.94173 0.76847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.40 36.00 0.37 -0.27 16 2 C -0.03 -0.36 7.28 -35.74 -0.26 -0.62 16 3 C -0.16 -2.63 10.90 -37.46 -0.41 -3.04 16 4 C -0.20 -3.61 6.24 -103.28 -0.64 -4.25 16 5 C 0.58 12.11 7.56 -12.54 -0.09 12.01 16 6 O -0.46 -12.11 13.50 5.27 0.07 -12.04 16 7 N -0.62 -10.53 3.06 -164.15 -0.50 -11.03 16 8 C 0.09 1.00 5.14 -2.41 -0.01 0.98 16 9 C -0.13 -1.22 7.10 -24.46 -0.17 -1.40 16 10 C -0.12 -1.48 6.45 -24.90 -0.16 -1.64 16 11 C 0.13 2.32 3.04 -66.96 -0.20 2.12 16 12 H 0.07 1.45 8.12 -51.93 -0.42 1.02 16 13 C 0.14 3.20 5.62 -4.05 -0.02 3.18 16 14 N -0.72 -20.53 4.40 -59.91 -0.26 -20.80 16 15 C -0.24 -7.34 9.99 -15.06 -0.15 -7.49 16 16 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.91 -30.26 13.06 55.49 0.72 -29.53 16 19 Si 0.90 24.14 29.55 -169.99 -5.02 19.11 16 20 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.86 7.11 56.52 0.40 -7.45 16 22 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 23 C -0.01 -0.19 10.45 30.08 0.31 0.13 16 24 O -0.18 -2.45 10.52 7.65 0.08 -2.37 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.16 2.78 8.06 -52.49 -0.42 2.36 16 29 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 30 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 37 H 0.40 12.20 4.94 -40.82 -0.20 12.00 16 38 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 39 H 0.22 2.09 4.84 -52.49 -0.25 1.83 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -38.76 319.85 -6.98 -45.74 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.35 Total: 6.83 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.54 Total: -0.73 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.04 Total: -61.37 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.15 Total: -14.41 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.02 Total: 19.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -38.76 -6.98 -45.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319064689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.420 kcal (2) G-P(sol) polarization free energy of solvation -38.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds