Wall clock time and date at job start Tue Mar 31 2020 00:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34180 * 125.44144 * 2 1 4 4 C 1.47013 * 105.95644 * 180.02562 * 3 2 1 5 5 C 1.47382 * 127.19376 * 179.97438 * 4 3 2 6 6 O 1.21607 * 119.99621 * 6.62867 * 5 4 3 7 7 N 1.34778 * 119.99818 * 186.64086 * 5 4 3 8 8 C 1.47420 * 125.65060 * 5.62122 * 7 5 4 9 9 C 1.55135 * 104.72142 * 155.82132 * 8 7 5 10 10 C 1.55151 * 101.48337 * 37.29761 * 9 8 7 11 11 C 1.47028 * 125.64455 * 185.93988 * 7 5 4 12 12 H 1.09005 * 109.87866 * 300.58691 * 11 7 5 13 13 C 1.52990 * 109.88438 * 61.59979 * 11 7 5 14 14 N 1.46500 * 109.47119 * 285.25251 * 13 11 7 15 15 C 1.36947 * 119.99994 * 172.45072 * 14 13 11 16 16 H 1.08002 * 119.99771 * 0.02562 * 15 14 13 17 17 C 1.38806 * 120.00020 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00128 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99993 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47174 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47084 * 120.00125 * 19 17 15 22 22 H 1.48500 * 109.47142 * 239.99718 * 19 17 15 23 23 C 1.36422 * 105.61792 * 359.97438 * 4 3 2 24 24 O 1.33652 * 108.39113 * 359.73797 * 23 4 3 25 25 H 1.09001 * 109.47019 * 89.99612 * 1 2 3 26 26 H 1.09000 * 109.47095 * 330.00101 * 1 2 3 27 27 H 1.08996 * 109.47577 * 209.99962 * 1 2 3 28 28 H 1.07997 * 127.01966 * 0.02562 * 3 2 1 29 29 H 1.08998 * 110.37202 * 274.75279 * 8 7 5 30 30 H 1.08999 * 110.36627 * 37.07661 * 8 7 5 31 31 H 1.09000 * 111.19396 * 279.19649 * 9 8 7 32 32 H 1.09000 * 110.93930 * 155.28970 * 9 8 7 33 33 H 1.09004 * 110.71970 * 205.96775 * 10 9 8 34 34 H 1.09003 * 110.87415 * 82.76831 * 10 9 8 35 35 H 1.09002 * 109.47487 * 45.25037 * 13 11 7 36 36 H 1.08994 * 109.47173 * 165.25553 * 13 11 7 37 37 H 0.96994 * 120.00596 * 352.45755 * 14 13 11 38 38 H 0.96998 * 119.99882 * 180.02562 * 18 17 15 39 39 H 1.08000 * 125.80212 * 179.97438 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 4.8359 2.6206 0.1200 7 7 6.1024 0.8138 -0.1369 8 6 6.3223 -0.6185 -0.4083 9 6 7.7223 -0.6832 -1.0735 10 6 8.4908 0.4082 -0.2827 11 6 7.4090 1.4798 -0.0320 12 1 7.4843 2.2683 -0.7809 13 6 7.5794 2.0737 1.3676 14 7 6.7570 3.2800 1.4896 15 6 6.6257 3.8993 2.7040 16 1 7.1288 3.4986 3.5717 17 6 5.8462 5.0419 2.8197 18 7 5.2327 5.5300 1.7623 19 14 5.6677 5.8870 4.4760 20 1 6.4516 5.1462 5.4967 21 1 6.1741 7.2796 4.3783 22 1 4.2359 5.9075 4.8695 23 6 3.5790 -0.7583 -0.0004 24 8 2.2852 -1.0935 0.0062 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8899 0.5138 28 1 1.9596 2.1229 0.0004 29 1 6.3151 -1.1864 0.5220 30 1 5.5609 -0.9966 -1.0905 31 1 7.6673 -0.4323 -2.1328 32 1 8.1771 -1.6633 -0.9294 33 1 9.3060 0.8158 -0.8808 34 1 8.8671 0.0120 0.6605 35 1 7.2654 1.3431 2.1131 36 1 8.6264 2.3301 1.5285 37 1 6.3055 3.6401 0.7104 38 1 4.6882 6.3287 1.8432 39 1 4.4103 -1.4477 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319064689.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:13 Heat of formation + Delta-G solvation = -11.668101 kcal Electronic energy + Delta-G solvation = -22235.090482 eV Core-core repulsion = 18951.540263 eV Total energy + Delta-G solvation = -3283.550219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.54972 -40.98726 -38.29068 -36.28997 -34.15516 -33.66426 -32.99944 -31.95205 -30.36303 -27.60833 -26.76964 -25.51341 -24.21281 -22.66946 -21.88741 -21.67438 -20.15940 -19.07453 -17.91547 -17.64818 -17.26205 -17.14676 -16.71830 -16.18129 -15.25021 -15.17668 -14.88604 -14.68885 -14.47808 -14.26298 -14.00263 -13.78122 -13.71539 -13.62308 -13.30232 -13.12159 -12.94494 -12.73387 -12.64417 -12.22522 -12.01540 -11.92471 -11.61958 -11.51695 -10.94314 -10.77902 -10.71323 -9.56752 -9.51667 -8.83550 -7.82647 -5.11894 0.41482 1.04307 1.38704 1.42625 1.51919 1.81652 2.10118 2.47974 2.56526 3.43874 3.49894 3.64152 3.68794 3.74109 3.98162 4.03151 4.24958 4.33639 4.40040 4.44557 4.52010 4.61710 4.71779 4.75325 4.80098 4.82276 4.87027 4.89355 5.00712 5.10903 5.15207 5.18025 5.36993 5.41038 5.45894 5.61848 5.99969 6.34145 6.66303 7.33487 7.50374 8.31462 8.57085 9.39090 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.006858 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.382234 B = 4081.730422 C = 5890.275532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.002 4.002 3 C -0.206 4.206 4 C -0.251 4.251 5 C 0.568 3.432 6 O -0.535 6.535 7 N -0.615 5.615 8 C 0.074 3.926 9 C -0.115 4.115 10 C -0.114 4.114 11 C 0.131 3.869 12 H 0.044 0.956 13 C 0.141 3.859 14 N -0.741 5.741 15 C -0.247 4.247 16 H 0.066 0.934 17 C -0.079 4.079 18 N -0.955 5.955 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.289 1.289 22 H -0.297 1.297 23 C 0.026 3.974 24 O -0.171 6.171 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.013 0.987 36 H 0.027 0.973 37 H 0.388 0.612 38 H 0.243 0.757 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.818 -22.226 -7.933 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.051 4.051 3 C -0.226 4.226 4 C -0.256 4.256 5 C 0.358 3.642 6 O -0.412 6.412 7 N -0.350 5.350 8 C -0.047 4.047 9 C -0.152 4.152 10 C -0.152 4.152 11 C 0.027 3.973 12 H 0.063 0.937 13 C 0.013 3.987 14 N -0.390 5.390 15 C -0.379 4.379 16 H 0.084 0.916 17 C -0.272 4.272 18 N -0.605 5.605 19 Si 0.800 3.200 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.224 1.224 23 C -0.043 4.043 24 O -0.066 6.066 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.227 0.773 38 H 0.052 0.948 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -2.038 -21.795 -7.709 23.207 hybrid contribution -0.214 1.820 0.792 1.996 sum -2.253 -19.975 -6.917 21.258 Atomic orbital electron populations 1.20519 0.81568 1.05371 1.05187 1.22839 0.95571 0.82534 1.04165 1.22580 0.91236 1.00003 1.08741 1.21558 0.93885 0.94898 1.15216 1.17566 0.82712 0.86902 0.77037 1.90888 1.86046 1.15645 1.48573 1.48366 1.04034 1.10993 1.71611 1.23066 0.99974 0.80382 1.01288 1.22825 0.92504 1.00483 0.99421 1.22638 0.95805 0.94388 1.02363 1.21867 0.83793 0.96080 0.95545 0.93745 1.21251 0.93969 0.88375 0.95124 1.43143 1.57766 1.28807 1.09309 1.19629 1.23550 1.05769 0.88996 0.91599 1.25627 1.00839 1.00103 1.00632 1.70005 1.36769 1.24015 1.29716 0.85111 0.76861 0.78227 0.79807 1.18959 1.21647 1.22447 1.25602 0.84754 0.94626 0.99327 1.83747 1.16634 1.35116 1.71132 0.88034 0.88873 0.88367 0.84849 0.89291 0.88395 0.90086 0.85837 0.88492 0.89116 0.96894 0.95553 0.77301 0.94835 0.72675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.40 71.24 0.74 -0.40 16 2 C 0.00 -0.06 7.28 24.76 0.18 0.12 16 3 C -0.21 -7.36 10.90 23.65 0.26 -7.10 16 4 C -0.25 -9.08 6.24 -18.99 -0.12 -9.20 16 5 C 0.57 25.03 7.56 86.65 0.65 25.68 16 6 O -0.54 -31.03 13.50 -4.05 -0.05 -31.09 16 7 N -0.61 -20.95 3.06 -791.51 -2.42 -23.38 16 8 C 0.07 1.40 5.14 86.94 0.45 1.84 16 9 C -0.11 -1.60 7.10 32.06 0.23 -1.37 16 10 C -0.11 -2.36 6.45 31.78 0.20 -2.16 16 11 C 0.13 4.64 3.04 45.34 0.14 4.78 16 12 H 0.04 1.83 8.12 -2.38 -0.02 1.81 16 13 C 0.14 6.38 5.62 86.38 0.49 6.86 16 14 N -0.74 -44.28 4.40 -343.47 -1.51 -45.79 16 15 C -0.25 -15.81 9.99 84.03 0.84 -14.97 16 16 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -5.18 5.50 84.86 0.47 -4.71 16 18 N -0.95 -66.74 13.06 21.65 0.28 -66.45 16 19 Si 0.97 51.39 29.55 68.60 2.03 53.41 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 22 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 23 C 0.03 0.64 10.45 67.40 0.70 1.34 16 24 O -0.17 -4.17 10.52 4.47 0.05 -4.12 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.13 5.30 8.06 -2.91 -0.02 5.27 16 29 H 0.09 1.35 7.77 -2.39 -0.02 1.33 16 30 H 0.10 1.42 5.95 -2.39 -0.01 1.41 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 35 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.03 1.16 8.10 -2.39 -0.02 1.14 16 37 H 0.39 25.37 4.94 -92.71 -0.46 24.92 16 38 H 0.24 16.35 8.31 -92.71 -0.77 15.57 16 39 H 0.26 3.76 4.84 -2.91 -0.01 3.75 16 Total: -1.00 -93.57 319.85 4.20 -89.37 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.61 Total: 27.33 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 5.23 Total: 0.71 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -3.65 Total: -135.62 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.01 Total: -35.21 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.03 Total: 53.41 kcal Total: -93.57 4.20 -89.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319064689.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.704 kcal (2) G-P(sol) polarization free energy of solvation -93.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds