Wall clock time and date at job start Tue Mar 31 2020 01:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34858 * 119.09973 * 2 1 4 4 C 1.41674 * 119.33815 * 179.77920 * 3 2 1 5 5 O 1.22082 * 121.06958 * 180.21575 * 4 3 2 6 6 C 1.47100 * 117.86293 * 0.42190 * 4 3 2 7 7 C 1.47290 * 120.88323 * 179.82156 * 6 4 3 8 8 O 1.21621 * 119.99704 * 313.23919 * 7 6 4 9 9 N 1.34769 * 120.00453 * 133.23837 * 7 6 4 10 10 C 1.46505 * 119.99890 * 4.73831 * 9 7 6 11 11 C 1.46495 * 120.00257 * 184.73354 * 9 7 6 12 12 H 1.09003 * 109.47142 * 0.02562 * 11 9 7 13 13 C 1.52998 * 109.47469 * 240.00269 * 11 9 7 14 14 C 1.50699 * 109.47083 * 120.00121 * 11 9 7 15 15 H 1.07998 * 120.00570 * 359.97438 * 14 11 9 16 16 C 1.37887 * 120.00125 * 180.02562 * 14 11 9 17 17 N 1.31512 * 119.99635 * 0.02562 * 16 14 11 18 18 Si 1.86789 * 119.99930 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47691 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47158 * 120.00044 * 18 16 14 21 21 H 1.48508 * 109.47162 * 239.99752 * 18 16 14 22 22 C 1.37996 * 118.23495 * 359.53963 * 6 4 3 23 23 N 1.34340 * 120.37034 * 0.27627 * 22 6 4 24 24 C 1.46504 * 118.80439 * 179.97438 * 23 22 6 25 25 H 1.08998 * 109.46787 * 264.07569 * 1 2 3 26 26 H 1.09000 * 109.46872 * 24.07304 * 1 2 3 27 27 H 1.08993 * 109.46914 * 144.07399 * 1 2 3 28 28 H 1.08002 * 120.33278 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47419 * 95.01829 * 10 9 7 30 30 H 1.09000 * 109.47015 * 335.01527 * 10 9 7 31 31 H 1.08999 * 109.46879 * 215.02263 * 10 9 7 32 32 H 1.09003 * 109.47204 * 300.00288 * 13 11 9 33 33 H 1.08998 * 109.47214 * 59.99519 * 13 11 9 34 34 H 1.08997 * 109.47314 * 179.97438 * 13 11 9 35 35 H 0.97000 * 119.99722 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.80895 * 180.25412 * 22 6 4 37 37 H 1.08997 * 109.46796 * 96.03881 * 24 23 22 38 38 H 1.08995 * 109.47087 * 216.04036 * 24 23 22 39 39 H 1.09002 * 109.47098 * 336.03441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0048 5 8 4.2053 2.2326 0.0088 6 6 4.2726 -0.1133 -0.0001 7 6 5.7437 -0.1848 0.0005 8 8 6.3865 0.5095 -0.7636 9 7 6.3776 -1.0194 0.8478 10 6 5.6034 -1.9304 1.6946 11 6 7.8406 -1.0159 0.9219 12 1 8.2380 -0.2783 0.2246 13 6 8.3733 -2.4028 0.5563 14 6 8.2718 -0.6655 2.3228 15 1 7.5302 -0.4650 3.0818 16 6 9.6132 -0.5997 2.6352 17 7 10.5163 -0.8424 1.7105 18 14 10.1475 -0.1647 4.3713 19 1 8.9477 0.0624 5.2164 20 1 10.9480 -1.2802 4.9371 21 1 10.9718 1.0703 4.3408 22 6 3.5077 -1.2619 0.0009 23 7 2.1665 -1.1847 0.0004 24 6 1.3880 -2.4259 0.0009 25 1 -0.3633 -0.1061 1.0222 26 1 -0.3633 0.9383 -0.4192 27 1 -0.3633 -0.8321 -0.6029 28 1 1.6137 2.1083 0.0004 29 1 5.5266 -2.9024 1.2074 30 1 4.6049 -1.5218 1.8499 31 1 6.1028 -2.0447 2.6567 32 1 7.9759 -3.1401 1.2538 33 1 8.0614 -2.6563 -0.4569 34 1 9.4619 -2.4000 0.6110 35 1 11.4599 -0.7965 1.9303 36 1 3.9900 -2.2282 0.0016 37 1 1.1031 -2.6756 1.0229 38 1 0.4912 -2.2924 -0.6041 39 1 1.9906 -3.2328 -0.4160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322812904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:04 Heat of formation + Delta-G solvation = -21.005871 kcal Electronic energy + Delta-G solvation = -22091.306365 eV Core-core repulsion = 18807.351229 eV Total energy + Delta-G solvation = -3283.955136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18423 -38.76617 -37.56112 -35.10452 -33.68388 -32.92459 -32.19176 -29.55699 -27.86652 -26.99963 -26.19239 -25.14960 -23.96812 -22.16100 -20.83269 -18.92043 -17.64186 -17.07622 -16.50634 -16.26043 -16.01788 -15.46561 -15.09926 -14.38995 -14.11897 -14.07872 -13.70005 -13.62630 -13.32371 -13.20673 -12.81932 -12.62476 -12.42859 -12.24436 -12.04030 -11.85236 -11.59331 -11.37373 -10.99118 -10.77073 -10.64336 -10.17182 -10.10494 -9.42857 -9.28581 -9.08605 -8.73976 -8.35024 -7.80673 -7.47289 -5.99779 -4.06957 1.10038 1.37320 2.32138 3.31467 3.39498 3.42249 3.49253 3.86320 4.03172 4.17628 4.33319 4.46485 4.50991 4.62797 4.72082 4.93083 5.00474 5.07014 5.21800 5.31374 5.37977 5.50123 5.66873 5.77299 5.86916 5.93608 6.36334 6.42747 6.60089 6.80682 6.81950 6.88781 7.13143 7.52246 7.63869 7.79830 8.11075 8.28282 8.38277 8.62380 8.93082 9.21605 9.59315 11.05755 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.004704 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.576460 B = 5951.491230 C = 6177.465611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.275 4.275 4 C 0.407 3.593 5 O -0.491 6.491 6 C -0.274 4.274 7 C 0.567 3.433 8 O -0.530 6.530 9 N -0.592 5.592 10 C 0.079 3.921 11 C 0.258 3.742 12 H 0.064 0.936 13 C -0.144 4.144 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.898 3.102 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.151 3.849 23 N -0.476 5.476 24 C 0.052 3.948 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.149 0.851 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.011 0.989 34 H 0.093 0.907 35 H 0.262 0.738 36 H 0.170 0.830 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.473 -8.299 -1.850 24.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.300 4.300 4 C 0.294 3.706 5 O -0.372 6.372 6 C -0.285 4.285 7 C 0.353 3.647 8 O -0.407 6.407 9 N -0.324 5.324 10 C -0.066 4.066 11 C 0.158 3.842 12 H 0.082 0.918 13 C -0.203 4.203 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.023 3.977 23 N -0.164 5.164 24 C -0.090 4.090 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.167 0.833 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.187 0.813 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.669 -7.547 -2.271 24.000 hybrid contribution 0.284 -0.025 1.078 1.115 sum -22.385 -7.572 -1.194 23.661 Atomic orbital electron populations 1.21154 0.88356 1.04784 1.03884 1.20198 0.94604 0.85155 0.95220 1.22195 0.96274 0.97051 1.14447 1.18203 0.88266 0.87914 0.76208 1.90803 1.70116 1.33448 1.42867 1.22781 0.95652 0.94838 1.15239 1.17481 0.85292 0.80536 0.81365 1.90756 1.66828 1.43054 1.40077 1.48157 1.09363 1.36911 1.37971 1.21765 0.95722 0.92276 0.96790 1.18941 0.72326 0.95043 0.97846 0.91788 1.22068 1.04783 0.97501 0.95914 1.21369 0.91966 1.47562 0.95293 0.92216 1.24889 0.96430 0.95037 0.97458 1.69893 1.00979 1.49069 1.32699 0.86438 0.78601 0.78066 0.84275 1.19841 1.21007 1.20879 1.22299 0.81610 1.00254 0.93554 1.42490 1.05303 1.06831 1.61765 1.22469 0.97624 0.84695 1.04183 0.89504 0.89075 0.90312 0.83327 0.94073 0.92726 0.90221 0.95267 0.97039 0.88829 0.92799 0.81262 0.90144 0.89155 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.34 36.01 0.34 -0.21 16 2 C 0.15 1.44 6.64 -82.13 -0.54 0.90 16 3 C -0.28 -3.75 9.57 -39.47 -0.38 -4.13 16 4 C 0.41 8.08 6.95 -34.68 -0.24 7.84 16 5 O -0.49 -12.33 17.25 1.12 0.02 -12.31 16 6 C -0.27 -5.15 5.18 -102.71 -0.53 -5.69 16 7 C 0.57 13.61 7.11 -12.58 -0.09 13.52 16 8 O -0.53 -15.38 16.04 1.54 0.02 -15.36 16 9 N -0.59 -13.56 2.75 -176.59 -0.49 -14.05 16 10 C 0.08 1.33 8.08 59.85 0.48 1.82 16 11 C 0.26 6.97 2.63 -69.09 -0.18 6.79 16 12 H 0.06 2.02 6.91 -51.93 -0.36 1.67 16 13 C -0.14 -3.52 8.97 37.16 0.33 -3.19 16 14 C -0.52 -14.82 8.03 -34.44 -0.28 -15.10 16 15 H 0.06 1.68 7.25 -52.49 -0.38 1.30 16 16 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 17 N -0.89 -25.95 11.32 55.43 0.63 -25.33 16 18 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C 0.15 1.86 7.77 -16.54 -0.13 1.73 16 23 N -0.48 -4.15 2.97 -119.75 -0.36 -4.51 16 24 C 0.05 0.18 9.98 59.85 0.60 0.77 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.09 0.36 7.97 -51.93 -0.41 -0.06 16 27 H 0.08 0.18 6.01 -51.93 -0.31 -0.13 16 28 H 0.15 1.76 8.01 -52.49 -0.42 1.34 16 29 H 0.04 0.57 7.63 -51.93 -0.40 0.17 16 30 H 0.05 0.79 5.41 -51.93 -0.28 0.51 16 31 H 0.08 1.45 6.97 -51.93 -0.36 1.09 16 32 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.17 1.68 6.23 -52.49 -0.33 1.35 16 37 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.13 5.94 -51.93 -0.31 -0.18 16 39 H 0.09 0.21 7.86 -51.93 -0.41 -0.20 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -40.35 319.39 -6.18 -46.53 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.08 Total: -3.39 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.72 Total: 6.78 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.21 Total: -43.88 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: 0.04 Total: -27.67 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -40.35 -6.18 -46.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322812904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.526 kcal (2) G-P(sol) polarization free energy of solvation -40.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds