Wall clock time and date at job start Tue Mar 31 2020 01:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34858 * 119.09973 * 2 1 4 4 C 1.41674 * 119.33815 * 179.77920 * 3 2 1 5 5 O 1.22082 * 121.06958 * 180.21575 * 4 3 2 6 6 C 1.47100 * 117.86293 * 0.42190 * 4 3 2 7 7 C 1.47290 * 120.88323 * 179.82156 * 6 4 3 8 8 O 1.21621 * 119.99704 * 313.23919 * 7 6 4 9 9 N 1.34769 * 120.00453 * 133.23837 * 7 6 4 10 10 C 1.46505 * 119.99890 * 4.73831 * 9 7 6 11 11 C 1.46495 * 120.00257 * 184.73354 * 9 7 6 12 12 H 1.09003 * 109.47142 * 0.02562 * 11 9 7 13 13 C 1.52998 * 109.47469 * 240.00269 * 11 9 7 14 14 C 1.50699 * 109.47083 * 120.00121 * 11 9 7 15 15 H 1.07998 * 120.00570 * 359.97438 * 14 11 9 16 16 C 1.37887 * 120.00125 * 180.02562 * 14 11 9 17 17 N 1.31512 * 119.99635 * 0.02562 * 16 14 11 18 18 Si 1.86789 * 119.99930 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47691 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47158 * 120.00044 * 18 16 14 21 21 H 1.48508 * 109.47162 * 239.99752 * 18 16 14 22 22 C 1.37996 * 118.23495 * 359.53963 * 6 4 3 23 23 N 1.34340 * 120.37034 * 0.27627 * 22 6 4 24 24 C 1.46504 * 118.80439 * 179.97438 * 23 22 6 25 25 H 1.08998 * 109.46787 * 264.07569 * 1 2 3 26 26 H 1.09000 * 109.46872 * 24.07304 * 1 2 3 27 27 H 1.08993 * 109.46914 * 144.07399 * 1 2 3 28 28 H 1.08002 * 120.33278 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47419 * 95.01829 * 10 9 7 30 30 H 1.09000 * 109.47015 * 335.01527 * 10 9 7 31 31 H 1.08999 * 109.46879 * 215.02263 * 10 9 7 32 32 H 1.09003 * 109.47204 * 300.00288 * 13 11 9 33 33 H 1.08998 * 109.47214 * 59.99519 * 13 11 9 34 34 H 1.08997 * 109.47314 * 179.97438 * 13 11 9 35 35 H 0.97000 * 119.99722 * 180.02562 * 17 16 14 36 36 H 1.08000 * 119.80895 * 180.25412 * 22 6 4 37 37 H 1.08997 * 109.46796 * 96.03881 * 24 23 22 38 38 H 1.08995 * 109.47087 * 216.04036 * 24 23 22 39 39 H 1.09002 * 109.47098 * 336.03441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0048 5 8 4.2053 2.2326 0.0088 6 6 4.2726 -0.1133 -0.0001 7 6 5.7437 -0.1848 0.0005 8 8 6.3865 0.5095 -0.7636 9 7 6.3776 -1.0194 0.8478 10 6 5.6034 -1.9304 1.6946 11 6 7.8406 -1.0159 0.9219 12 1 8.2380 -0.2783 0.2246 13 6 8.3733 -2.4028 0.5563 14 6 8.2718 -0.6655 2.3228 15 1 7.5302 -0.4650 3.0818 16 6 9.6132 -0.5997 2.6352 17 7 10.5163 -0.8424 1.7105 18 14 10.1475 -0.1647 4.3713 19 1 8.9477 0.0624 5.2164 20 1 10.9480 -1.2802 4.9371 21 1 10.9718 1.0703 4.3408 22 6 3.5077 -1.2619 0.0009 23 7 2.1665 -1.1847 0.0004 24 6 1.3880 -2.4259 0.0009 25 1 -0.3633 -0.1061 1.0222 26 1 -0.3633 0.9383 -0.4192 27 1 -0.3633 -0.8321 -0.6029 28 1 1.6137 2.1083 0.0004 29 1 5.5266 -2.9024 1.2074 30 1 4.6049 -1.5218 1.8499 31 1 6.1028 -2.0447 2.6567 32 1 7.9759 -3.1401 1.2538 33 1 8.0614 -2.6563 -0.4569 34 1 9.4619 -2.4000 0.6110 35 1 11.4599 -0.7965 1.9303 36 1 3.9900 -2.2282 0.0016 37 1 1.1031 -2.6756 1.0229 38 1 0.4912 -2.2924 -0.6041 39 1 1.9906 -3.2328 -0.4160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322812904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:03 Heat of formation + Delta-G solvation = -52.312701 kcal Electronic energy + Delta-G solvation = -22092.663931 eV Core-core repulsion = 18807.351229 eV Total energy + Delta-G solvation = -3285.312702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.24768 -40.42045 -38.97493 -37.05740 -35.14200 -34.18711 -33.54944 -31.31217 -28.85543 -27.83430 -27.54100 -27.31687 -25.10137 -23.66724 -22.20526 -20.51298 -18.93812 -18.46754 -18.18590 -17.52825 -17.28786 -16.87634 -16.57729 -16.04713 -15.76395 -15.37021 -14.91803 -14.71780 -14.37638 -14.27640 -13.85605 -13.81329 -13.75256 -13.57602 -13.28310 -13.10067 -12.95356 -12.72011 -12.64520 -12.58988 -12.40753 -12.19875 -12.12932 -11.21595 -10.99514 -10.56197 -10.40953 -10.28891 -9.37821 -8.99292 -8.16563 -6.33430 -0.05887 0.32936 1.36934 1.40616 1.49363 1.51464 1.82497 2.31629 2.46109 2.74664 3.10916 3.30362 3.59623 3.65327 3.83486 4.15744 4.29043 4.38029 4.49035 4.51817 4.65238 4.74346 4.77003 4.79068 4.88093 4.90515 4.91642 4.98002 5.04703 5.19362 5.31592 5.47975 5.62753 5.66010 5.76746 5.84396 6.06659 6.15197 6.74050 6.81182 7.08482 7.30879 7.49358 8.88305 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.004704 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.576460 B = 5951.491230 C = 6177.465611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.193 3.807 3 C -0.308 4.308 4 C 0.380 3.620 5 O -0.589 6.589 6 C -0.341 4.341 7 C 0.557 3.443 8 O -0.607 6.607 9 N -0.597 5.597 10 C 0.073 3.927 11 C 0.260 3.740 12 H -0.003 1.003 13 C -0.126 4.126 14 C -0.541 4.541 15 H 0.056 0.944 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.265 1.265 21 H -0.288 1.288 22 C 0.210 3.790 23 N -0.455 5.455 24 C 0.033 3.967 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.066 0.934 35 H 0.265 0.735 36 H 0.208 0.792 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.224 -12.543 -0.354 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 C -0.331 4.331 4 C 0.275 3.725 5 O -0.479 6.479 6 C -0.351 4.351 7 C 0.347 3.653 8 O -0.489 6.489 9 N -0.327 5.327 10 C -0.068 4.068 11 C 0.158 3.842 12 H 0.015 0.985 13 C -0.184 4.184 14 C -0.579 4.579 15 H 0.075 0.925 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.190 1.190 21 H -0.214 1.214 22 C 0.077 3.923 23 N -0.139 5.139 24 C -0.105 4.105 25 H 0.132 0.868 26 H 0.116 0.884 27 H 0.134 0.866 28 H 0.174 0.826 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.224 0.776 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -27.534 -11.898 -0.745 30.004 hybrid contribution 1.518 1.082 0.576 1.951 sum -26.016 -10.816 -0.169 28.175 Atomic orbital electron populations 1.21408 0.83311 1.06891 1.06266 1.20904 0.97221 0.83734 0.89734 1.22029 0.93181 0.99821 1.18118 1.19057 0.90847 0.87346 0.75211 1.90739 1.72125 1.35948 1.49119 1.22189 0.92909 0.96985 1.23052 1.18327 0.87669 0.79137 0.80182 1.90682 1.69123 1.45890 1.43224 1.48152 1.08189 1.37883 1.38500 1.22104 0.95945 0.93124 0.95675 1.18568 0.75252 0.94697 0.95692 0.98505 1.21807 1.02935 0.96443 0.97243 1.21594 0.92415 1.48200 0.95706 0.92542 1.25768 0.96384 0.94701 1.01692 1.70038 1.01323 1.49457 1.34730 0.85372 0.78251 0.77901 0.79256 1.19167 1.19022 1.21405 1.22573 0.82955 0.99185 0.87620 1.43211 1.04502 1.09194 1.56961 1.23144 0.98341 0.81932 1.07111 0.86822 0.88401 0.86603 0.82575 0.89464 0.90020 0.91392 0.92583 0.95833 0.91497 0.92552 0.77601 0.87184 0.85892 0.86835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.24 9.34 71.24 0.67 0.43 16 2 C 0.19 2.75 6.64 41.20 0.27 3.02 16 3 C -0.31 -8.37 9.57 22.34 0.21 -8.15 16 4 C 0.38 16.31 6.95 25.45 0.18 16.49 16 5 O -0.59 -33.46 17.25 -2.03 -0.03 -33.50 16 6 C -0.34 -13.21 5.18 -18.63 -0.10 -13.30 16 7 C 0.56 28.72 7.11 86.63 0.62 29.33 16 8 O -0.61 -39.25 16.04 -0.54 -0.01 -39.26 16 9 N -0.60 -28.29 2.75 -830.85 -2.29 -30.58 16 10 C 0.07 2.33 8.08 127.77 1.03 3.36 16 11 C 0.26 14.81 2.63 44.25 0.12 14.93 16 12 H 0.00 -0.21 6.91 -2.39 -0.02 -0.23 16 13 C -0.13 -6.26 8.97 71.98 0.65 -5.62 16 14 C -0.54 -31.84 8.03 25.60 0.21 -31.63 16 15 H 0.06 3.27 7.25 -2.91 -0.02 3.25 16 16 C 0.01 0.82 5.30 84.66 0.45 1.27 16 17 N -0.92 -55.67 11.32 21.45 0.24 -55.43 16 18 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 22 C 0.21 4.43 7.77 84.25 0.65 5.08 16 23 N -0.46 -5.29 2.97 -532.76 -1.58 -6.87 16 24 C 0.03 -0.06 9.98 127.77 1.27 1.22 16 25 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.10 0.23 7.97 -2.39 -0.02 0.21 16 27 H 0.12 -0.51 6.01 -2.39 -0.01 -0.52 16 28 H 0.16 3.81 8.01 -2.91 -0.02 3.79 16 29 H 0.09 1.98 7.63 -2.39 -0.02 1.96 16 30 H 0.08 2.11 5.41 -2.39 -0.01 2.09 16 31 H 0.07 2.35 6.97 -2.39 -0.02 2.34 16 32 H 0.06 2.43 7.67 -2.39 -0.02 2.41 16 33 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.21 2.87 6.23 -2.91 -0.02 2.85 16 37 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.12 -0.84 5.94 -2.39 -0.01 -0.85 16 39 H 0.11 -0.50 7.86 -2.39 -0.02 -0.52 16 Total: -1.00 -107.63 319.39 5.65 -101.98 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 1.07 Total: -0.44 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.23 Total: 16.42 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.63 Total: -92.88 kcal Atomic # 8 Polarization: -72.71 SS G_CDS: -0.04 Total: -72.76 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -107.63 5.65 -101.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322812904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.668 kcal (2) G-P(sol) polarization free energy of solvation -107.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds