Wall clock time and date at job start Tue Mar 31 2020 01:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.34863 * 119.10854 * 2 1 4 4 C 1.41666 * 119.34430 * 180.24006 * 3 2 1 5 5 O 1.22091 * 121.07062 * 179.72691 * 4 3 2 6 6 C 1.47097 * 117.86629 * 359.75418 * 4 3 2 7 7 C 1.47281 * 120.88575 * 180.02562 * 6 4 3 8 8 O 1.21621 * 120.00352 * 318.04226 * 7 6 4 9 9 N 1.34784 * 119.99848 * 138.03550 * 7 6 4 10 10 C 1.46497 * 119.99823 * 354.70294 * 9 7 6 11 11 C 1.46504 * 119.99651 * 174.69898 * 9 7 6 12 12 H 1.09003 * 109.47157 * 0.02562 * 11 9 7 13 13 C 1.52993 * 109.46806 * 120.00321 * 11 9 7 14 14 C 1.50704 * 109.46914 * 240.00176 * 11 9 7 15 15 H 1.07996 * 119.99997 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99708 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00088 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99829 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46890 * 119.99874 * 18 16 14 21 21 H 1.48497 * 109.47455 * 240.00107 * 18 16 14 22 22 C 1.37998 * 118.23151 * 359.97438 * 6 4 3 23 23 N 1.34336 * 120.37379 * 0.02562 * 22 6 4 24 24 C 1.46500 * 118.80524 * 179.97438 * 23 22 6 25 25 H 1.09006 * 109.47240 * 264.03295 * 1 2 3 26 26 H 1.09003 * 109.47222 * 24.02640 * 1 2 3 27 27 H 1.09004 * 109.47600 * 144.02902 * 1 2 3 28 28 H 1.08007 * 120.32328 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.46911 * 92.51169 * 10 9 7 30 30 H 1.09001 * 109.46410 * 212.51276 * 10 9 7 31 31 H 1.08997 * 109.47461 * 332.51009 * 10 9 7 32 32 H 1.09003 * 109.47283 * 60.00053 * 13 11 9 33 33 H 1.09001 * 109.47353 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47407 * 299.99448 * 13 11 9 35 35 H 0.97003 * 119.99746 * 180.02562 * 17 16 14 36 36 H 1.07999 * 119.81095 * 180.02562 * 22 6 4 37 37 H 1.09000 * 109.47022 * 95.86559 * 24 23 22 38 38 H 1.08997 * 109.46944 * 335.86160 * 24 23 22 39 39 H 1.08998 * 109.46885 * 215.85894 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1841 -0.0052 5 8 4.2054 2.2325 -0.0103 6 6 4.2725 -0.1134 -0.0048 7 6 5.7435 -0.1849 -0.0094 8 8 6.3867 0.5664 -0.7172 9 7 6.3770 -1.0830 0.7709 10 6 5.6112 -1.9077 1.7087 11 6 7.8315 -1.2343 0.6811 12 1 8.2235 -0.5422 -0.0642 13 6 8.4609 -0.9284 2.0416 14 6 8.1655 -2.6480 0.2795 15 1 7.3737 -3.3620 0.1079 16 6 9.4820 -3.0296 0.1312 17 7 10.4463 -2.1601 0.3407 18 14 9.8962 -4.7819 -0.3659 19 1 8.6414 -5.5569 -0.5395 20 1 10.6500 -4.7685 -1.6453 21 1 10.7263 -5.4134 0.6911 22 6 3.5075 -1.2619 0.0011 23 7 2.1664 -1.1848 0.0058 24 6 1.3879 -2.4259 0.0115 25 1 -0.3634 -0.1068 1.0221 26 1 -0.3634 0.9386 -0.4184 27 1 -0.3634 -0.8317 -0.6036 28 1 1.6137 2.1083 0.0004 29 1 5.3400 -2.8477 1.2281 30 1 6.2173 -2.1123 2.5912 31 1 4.7064 -1.3767 2.0045 32 1 8.0689 -1.6202 2.7871 33 1 9.5430 -1.0414 1.9750 34 1 8.2193 0.0940 2.3321 35 1 11.3725 -2.4286 0.2359 36 1 3.9898 -2.2283 0.0020 37 1 1.1096 -2.6755 1.0354 38 1 1.9878 -3.2329 -0.4091 39 1 0.4871 -2.2924 -0.5875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322812906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:07 Heat of formation + Delta-G solvation = -22.498854 kcal Electronic energy + Delta-G solvation = -22097.086519 eV Core-core repulsion = 18813.066643 eV Total energy + Delta-G solvation = -3284.019876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16826 -38.75839 -37.56316 -35.10109 -33.66116 -32.92939 -32.20305 -29.55277 -27.85016 -26.98301 -26.18482 -25.17212 -23.98373 -22.12212 -20.84790 -18.90354 -17.64020 -17.08395 -16.45743 -16.17585 -16.10097 -15.43694 -15.09897 -14.39578 -14.15882 -14.11728 -13.70053 -13.62320 -13.32036 -13.21307 -12.78018 -12.68766 -12.48420 -12.17832 -12.01259 -11.87076 -11.49890 -11.46669 -11.04659 -10.77413 -10.60880 -10.20337 -10.12328 -9.42247 -9.31809 -9.07234 -8.74276 -8.38548 -7.81461 -7.46416 -6.02965 -4.11519 1.08930 1.37964 2.33300 3.26566 3.33770 3.35977 3.50117 3.91433 4.05293 4.14319 4.32978 4.43512 4.53846 4.66452 4.73679 4.95090 5.00774 5.08167 5.23274 5.27780 5.38169 5.49094 5.68456 5.77720 5.88708 6.00408 6.25100 6.40841 6.61174 6.82656 6.86705 6.94702 7.15869 7.55882 7.61841 7.77412 8.10056 8.25455 8.36931 8.62873 8.88827 9.22177 9.55243 11.02257 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.004937 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.033729 B = 5669.938233 C = 6383.925553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.277 4.277 4 C 0.408 3.592 5 O -0.493 6.493 6 C -0.279 4.279 7 C 0.567 3.433 8 O -0.529 6.529 9 N -0.595 5.595 10 C 0.086 3.914 11 C 0.259 3.741 12 H 0.064 0.936 13 C -0.147 4.147 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.156 3.844 23 N -0.475 5.475 24 C 0.051 3.949 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.093 0.907 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.173 0.827 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.242 -4.173 2.484 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 C -0.301 4.301 4 C 0.295 3.705 5 O -0.376 6.376 6 C -0.289 4.289 7 C 0.353 3.647 8 O -0.405 6.405 9 N -0.327 5.327 10 C -0.058 4.058 11 C 0.159 3.841 12 H 0.082 0.918 13 C -0.206 4.206 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.524 5.524 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.210 1.210 22 C 0.027 3.973 23 N -0.163 5.163 24 C -0.091 4.091 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.166 0.834 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.190 0.810 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.438 -3.371 2.112 22.788 hybrid contribution 0.224 -1.268 -0.180 1.300 sum -22.214 -4.640 1.932 22.775 Atomic orbital electron populations 1.21155 0.88368 1.04809 1.03874 1.20216 0.94618 0.85186 0.95114 1.22192 0.96312 0.97016 1.14595 1.18212 0.88252 0.87945 0.76120 1.90790 1.70141 1.33464 1.43161 1.22771 0.95643 0.94711 1.15787 1.17473 0.85307 0.80945 0.80949 1.90762 1.66762 1.41132 1.41870 1.48159 1.10162 1.36583 1.37829 1.21646 0.95776 0.94127 0.94238 1.18939 0.72601 0.97403 0.95170 0.91805 1.22082 1.04695 0.96259 0.97517 1.21334 0.92124 0.95685 1.47120 0.92365 1.24904 0.96213 0.97546 0.95192 1.69903 0.99719 1.33968 1.48791 0.86447 0.78298 0.84383 0.78234 1.19958 1.20946 1.20977 1.22414 0.81509 1.00578 0.92755 1.42532 1.05379 1.06857 1.61487 1.22487 0.97647 0.84734 1.04196 0.89510 0.89080 0.90274 0.83366 0.93781 0.90897 0.93028 0.95235 0.88836 0.96786 0.92743 0.80996 0.90105 0.88900 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.55 9.34 36.00 0.34 -0.21 16 2 C 0.16 1.45 6.64 -82.13 -0.55 0.90 16 3 C -0.28 -3.71 9.57 -39.47 -0.38 -4.08 16 4 C 0.41 7.93 6.94 -34.68 -0.24 7.69 16 5 O -0.49 -12.05 17.12 -3.92 -0.07 -12.12 16 6 C -0.28 -5.23 5.10 -102.72 -0.52 -5.75 16 7 C 0.57 13.59 7.17 -12.58 -0.09 13.50 16 8 O -0.53 -15.37 15.86 -3.50 -0.06 -15.42 16 9 N -0.59 -13.56 2.75 -176.59 -0.49 -14.04 16 10 C 0.09 1.46 8.23 59.85 0.49 1.96 16 11 C 0.26 6.93 2.63 -69.08 -0.18 6.75 16 12 H 0.06 2.00 6.91 -51.93 -0.36 1.64 16 13 C -0.15 -3.71 8.94 37.15 0.33 -3.38 16 14 C -0.52 -14.24 8.37 -34.44 -0.29 -14.53 16 15 H 0.06 1.52 7.58 -52.49 -0.40 1.12 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 18 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 C 0.16 2.00 8.03 -16.54 -0.13 1.87 16 23 N -0.47 -4.28 2.97 -119.75 -0.36 -4.63 16 24 C 0.05 0.20 9.99 59.85 0.60 0.79 16 25 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.35 7.97 -51.93 -0.41 -0.06 16 27 H 0.08 0.19 6.01 -51.93 -0.31 -0.12 16 28 H 0.15 1.71 8.01 -52.48 -0.42 1.29 16 29 H 0.04 0.65 7.06 -51.93 -0.37 0.28 16 30 H 0.07 1.26 6.43 -51.93 -0.33 0.92 16 31 H 0.05 0.74 6.16 -51.93 -0.32 0.42 16 32 H 0.03 0.67 6.67 -51.93 -0.35 0.32 16 33 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.17 1.93 6.03 -52.49 -0.32 1.61 16 37 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.09 0.29 7.86 -51.93 -0.41 -0.12 16 39 H 0.09 0.17 5.92 -51.93 -0.31 -0.14 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -39.38 318.54 -6.29 -45.67 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.02 Total: -2.44 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.72 Total: 7.16 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: -0.21 Total: -43.58 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.12 Total: -27.54 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -39.38 -6.29 -45.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322812906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.171 kcal (2) G-P(sol) polarization free energy of solvation -39.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds