Wall clock time and date at job start Tue Mar 31 2020 01:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.34863 * 119.10854 * 2 1 4 4 C 1.41666 * 119.34430 * 180.24006 * 3 2 1 5 5 O 1.22091 * 121.07062 * 179.72691 * 4 3 2 6 6 C 1.47097 * 117.86629 * 359.75418 * 4 3 2 7 7 C 1.47281 * 120.88575 * 180.02562 * 6 4 3 8 8 O 1.21621 * 120.00352 * 318.04226 * 7 6 4 9 9 N 1.34784 * 119.99848 * 138.03550 * 7 6 4 10 10 C 1.46497 * 119.99823 * 354.70294 * 9 7 6 11 11 C 1.46504 * 119.99651 * 174.69898 * 9 7 6 12 12 H 1.09003 * 109.47157 * 0.02562 * 11 9 7 13 13 C 1.52993 * 109.46806 * 120.00321 * 11 9 7 14 14 C 1.50704 * 109.46914 * 240.00176 * 11 9 7 15 15 H 1.07996 * 119.99997 * 0.02562 * 14 11 9 16 16 C 1.37872 * 119.99708 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00088 * 0.02562 * 16 14 11 18 18 Si 1.86802 * 119.99829 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46890 * 119.99874 * 18 16 14 21 21 H 1.48497 * 109.47455 * 240.00107 * 18 16 14 22 22 C 1.37998 * 118.23151 * 359.97438 * 6 4 3 23 23 N 1.34336 * 120.37379 * 0.02562 * 22 6 4 24 24 C 1.46500 * 118.80524 * 179.97438 * 23 22 6 25 25 H 1.09006 * 109.47240 * 264.03295 * 1 2 3 26 26 H 1.09003 * 109.47222 * 24.02640 * 1 2 3 27 27 H 1.09004 * 109.47600 * 144.02902 * 1 2 3 28 28 H 1.08007 * 120.32328 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.46911 * 92.51169 * 10 9 7 30 30 H 1.09001 * 109.46410 * 212.51276 * 10 9 7 31 31 H 1.08997 * 109.47461 * 332.51009 * 10 9 7 32 32 H 1.09003 * 109.47283 * 60.00053 * 13 11 9 33 33 H 1.09001 * 109.47353 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47407 * 299.99448 * 13 11 9 35 35 H 0.97003 * 119.99746 * 180.02562 * 17 16 14 36 36 H 1.07999 * 119.81095 * 180.02562 * 22 6 4 37 37 H 1.09000 * 109.47022 * 95.86559 * 24 23 22 38 38 H 1.08997 * 109.46944 * 335.86160 * 24 23 22 39 39 H 1.08998 * 109.46885 * 215.85894 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1841 -0.0052 5 8 4.2054 2.2325 -0.0103 6 6 4.2725 -0.1134 -0.0048 7 6 5.7435 -0.1849 -0.0094 8 8 6.3867 0.5664 -0.7172 9 7 6.3770 -1.0830 0.7709 10 6 5.6112 -1.9077 1.7087 11 6 7.8315 -1.2343 0.6811 12 1 8.2235 -0.5422 -0.0642 13 6 8.4609 -0.9284 2.0416 14 6 8.1655 -2.6480 0.2795 15 1 7.3737 -3.3620 0.1079 16 6 9.4820 -3.0296 0.1312 17 7 10.4463 -2.1601 0.3407 18 14 9.8962 -4.7819 -0.3659 19 1 8.6414 -5.5569 -0.5395 20 1 10.6500 -4.7685 -1.6453 21 1 10.7263 -5.4134 0.6911 22 6 3.5075 -1.2619 0.0011 23 7 2.1664 -1.1848 0.0058 24 6 1.3879 -2.4259 0.0115 25 1 -0.3634 -0.1068 1.0221 26 1 -0.3634 0.9386 -0.4184 27 1 -0.3634 -0.8317 -0.6036 28 1 1.6137 2.1083 0.0004 29 1 5.3400 -2.8477 1.2281 30 1 6.2173 -2.1123 2.5912 31 1 4.7064 -1.3767 2.0045 32 1 8.0689 -1.6202 2.7871 33 1 9.5430 -1.0414 1.9750 34 1 8.2193 0.0940 2.3321 35 1 11.3725 -2.4286 0.2359 36 1 3.9898 -2.2283 0.0020 37 1 1.1096 -2.6755 1.0354 38 1 1.9878 -3.2329 -0.4091 39 1 0.4871 -2.2924 -0.5875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322812906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:06 Heat of formation + Delta-G solvation = -52.126417 kcal Electronic energy + Delta-G solvation = -22098.371266 eV Core-core repulsion = 18813.066643 eV Total energy + Delta-G solvation = -3285.304624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.23463 -40.41821 -38.96247 -37.05165 -35.10700 -34.17657 -33.53643 -31.31317 -28.84502 -27.81988 -27.57616 -27.29261 -25.13300 -23.62157 -22.22114 -20.49228 -18.88504 -18.58701 -18.04365 -17.45213 -17.31027 -16.86278 -16.56605 -16.05390 -15.78265 -15.38007 -14.88434 -14.72111 -14.42837 -14.32925 -13.83771 -13.79185 -13.77727 -13.49640 -13.25107 -13.13484 -12.94411 -12.71295 -12.62912 -12.59702 -12.41345 -12.18176 -12.07243 -11.19223 -10.98720 -10.54232 -10.40707 -10.30082 -9.36111 -8.99678 -8.11910 -6.30376 -0.07701 0.33413 1.43623 1.45611 1.48799 1.57336 1.89820 2.29932 2.49364 2.74871 3.15986 3.30744 3.60457 3.66051 3.83918 4.13670 4.30639 4.38611 4.48643 4.51256 4.64769 4.71698 4.76557 4.77231 4.84688 4.88460 4.91630 4.96746 5.03922 5.19161 5.29805 5.46958 5.62427 5.68556 5.76133 5.85076 6.04901 6.14803 6.77338 6.82015 7.08691 7.33945 7.51094 8.93664 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.004937 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.033729 B = 5669.938233 C = 6383.925553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.192 3.808 3 C -0.307 4.307 4 C 0.383 3.617 5 O -0.585 6.585 6 C -0.341 4.341 7 C 0.557 3.443 8 O -0.606 6.606 9 N -0.599 5.599 10 C 0.081 3.919 11 C 0.261 3.739 12 H -0.002 1.002 13 C -0.133 4.133 14 C -0.532 4.532 15 H 0.073 0.927 16 C 0.008 3.992 17 N -0.924 5.924 18 Si 0.975 3.025 19 H -0.254 1.254 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.211 3.789 23 N -0.455 5.455 24 C 0.033 3.967 25 H 0.115 0.885 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.159 0.841 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.201 0.799 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.299 -9.083 3.207 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.083 3.917 3 C -0.330 4.330 4 C 0.278 3.722 5 O -0.475 6.475 6 C -0.351 4.351 7 C 0.346 3.654 8 O -0.488 6.488 9 N -0.329 5.329 10 C -0.061 4.061 11 C 0.159 3.841 12 H 0.016 0.984 13 C -0.191 4.191 14 C -0.570 4.570 15 H 0.092 0.908 16 C -0.191 4.191 17 N -0.563 5.563 18 Si 0.799 3.201 19 H -0.178 1.178 20 H -0.216 1.216 21 H -0.202 1.202 22 C 0.078 3.922 23 N -0.138 5.138 24 C -0.106 4.106 25 H 0.133 0.867 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.176 0.824 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.217 0.783 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -27.617 -8.367 2.879 29.000 hybrid contribution 1.577 0.099 -0.391 1.628 sum -26.040 -8.268 2.488 27.434 Atomic orbital electron populations 1.21407 0.83325 1.06855 1.06300 1.20926 0.97225 0.83710 0.89817 1.22047 0.93242 0.99750 1.17950 1.19010 0.90762 0.87260 0.75183 1.90731 1.72059 1.35766 1.48974 1.22198 0.92858 0.96882 1.23156 1.18332 0.87684 0.79658 0.79679 1.90692 1.69035 1.44049 1.45053 1.48148 1.08973 1.37245 1.38579 1.21981 0.96072 0.94890 0.93172 1.18568 0.75412 0.96207 0.93932 0.98449 1.21891 1.03170 0.96483 0.97594 1.21583 0.92777 0.95538 1.47140 0.90838 1.25899 0.96020 1.02212 0.94968 1.70082 1.00127 1.36396 1.49673 0.85256 0.78641 0.78769 0.77389 1.17752 1.21614 1.20156 1.22563 0.82994 0.99280 0.87407 1.43207 1.04443 1.09244 1.56926 1.23135 0.98276 0.81977 1.07172 0.86707 0.88316 0.86797 0.82381 0.90332 0.91015 0.90274 0.92657 0.91162 0.97450 0.92735 0.78274 0.87005 0.87276 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.23 9.34 71.23 0.66 0.44 16 2 C 0.19 2.71 6.64 41.20 0.27 2.98 16 3 C -0.31 -8.07 9.57 22.34 0.21 -7.86 16 4 C 0.38 15.99 6.94 25.44 0.18 16.16 16 5 O -0.58 -32.12 17.12 2.76 0.05 -32.07 16 6 C -0.34 -13.16 5.10 -18.63 -0.10 -13.26 16 7 C 0.56 28.66 7.17 86.62 0.62 29.28 16 8 O -0.61 -39.31 15.86 4.27 0.07 -39.24 16 9 N -0.60 -28.22 2.75 -830.84 -2.29 -30.50 16 10 C 0.08 2.57 8.23 127.77 1.05 3.62 16 11 C 0.26 14.75 2.63 44.24 0.12 14.87 16 12 H 0.00 -0.17 6.91 -2.39 -0.02 -0.19 16 13 C -0.13 -7.04 8.94 71.98 0.64 -6.40 16 14 C -0.53 -29.23 8.37 25.60 0.21 -29.01 16 15 H 0.07 3.71 7.58 -2.91 -0.02 3.69 16 16 C 0.01 0.44 5.30 84.65 0.45 0.89 16 17 N -0.92 -55.35 11.32 21.45 0.24 -55.10 16 18 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 19 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 C 0.21 4.72 8.03 84.25 0.68 5.40 16 23 N -0.45 -5.62 2.97 -532.78 -1.58 -7.21 16 24 C 0.03 -0.02 9.99 127.77 1.28 1.26 16 25 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 26 H 0.10 0.20 7.97 -2.39 -0.02 0.18 16 27 H 0.11 -0.45 6.01 -2.39 -0.01 -0.47 16 28 H 0.16 3.68 8.01 -2.91 -0.02 3.66 16 29 H 0.08 1.96 7.06 -2.39 -0.02 1.95 16 30 H 0.07 2.32 6.43 -2.39 -0.02 2.30 16 31 H 0.08 2.07 6.16 -2.39 -0.01 2.05 16 32 H 0.05 2.57 6.67 -2.39 -0.02 2.55 16 33 H 0.07 4.05 6.07 -2.39 -0.01 4.04 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.20 3.42 6.03 -2.91 -0.02 3.40 16 37 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.11 -0.22 7.86 -2.39 -0.02 -0.24 16 39 H 0.12 -0.71 5.92 -2.39 -0.01 -0.73 16 Total: -1.00 -103.65 318.54 5.87 -97.78 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: 1.07 Total: 3.26 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 6.28 Total: 18.37 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.63 Total: -92.81 kcal Atomic # 8 Polarization: -71.43 SS G_CDS: 0.11 Total: -71.31 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -103.65 5.87 -97.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322812906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.657 kcal (2) G-P(sol) polarization free energy of solvation -103.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds