Wall clock time and date at job start Tue Mar 31 2020 00:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38383 * 120.82571 * 2 1 4 4 C 1.38317 * 119.45852 * 179.97438 * 3 2 1 5 5 N 1.31904 * 121.18759 * 359.97438 * 4 3 2 6 6 C 1.32219 * 121.80008 * 359.72638 * 5 4 3 7 7 O 1.35427 * 119.79614 * 180.27003 * 6 5 4 8 8 C 1.39950 * 120.82704 * 179.97438 * 2 1 3 9 9 C 1.47527 * 120.59705 * 359.97438 * 8 2 1 10 10 O 1.21583 * 119.99867 * 90.00300 * 9 8 2 11 11 N 1.34777 * 119.99863 * 269.99991 * 9 8 2 12 12 C 1.46499 * 119.99665 * 179.72391 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46830 * 120.00397 * 20 18 16 23 23 H 1.48503 * 109.47108 * 240.00004 * 20 18 16 24 24 H 1.09008 * 109.46874 * 270.02242 * 1 2 3 25 25 H 1.08997 * 109.47248 * 30.02241 * 1 2 3 26 26 H 1.08998 * 109.46945 * 150.02605 * 1 2 3 27 27 H 1.07999 * 120.26789 * 359.95491 * 3 2 1 28 28 H 1.07997 * 119.40124 * 180.02562 * 4 3 2 29 29 H 0.96709 * 113.99453 * 270.26606 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 34 34 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 36 36 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 37 37 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 38 38 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 39 39 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1883 0.0000 4 6 3.5989 1.1553 0.0005 5 7 4.2548 0.0110 0.0016 6 6 3.6264 -1.1523 0.0075 7 8 4.3405 -2.3030 0.0138 8 6 2.2242 -1.2018 0.0005 9 6 1.5185 -2.4973 0.0017 10 8 1.2274 -3.0319 -1.0508 11 7 1.1966 -3.0883 1.1694 12 6 0.4905 -4.3719 1.1705 13 6 0.2421 -4.8162 2.6134 14 6 1.5812 -4.9701 3.3373 15 6 -0.6079 -3.7658 3.3312 16 6 -0.4837 -6.1369 2.6146 17 1 -0.7423 -6.6117 1.6796 18 6 -0.8175 -6.7390 3.8092 19 7 -0.5030 -6.1605 4.9476 20 14 -1.7178 -8.3758 3.8105 21 1 -1.9540 -8.8120 2.4109 22 1 -0.8949 -9.3926 4.5133 23 1 -3.0197 -8.2240 4.5086 24 1 -0.3633 0.0004 1.0278 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6941 2.1338 -0.0007 28 1 4.1514 2.0833 0.0010 29 1 4.5517 -2.6396 -0.8678 30 1 1.4286 -2.6617 2.0091 31 1 -0.4636 -4.2623 0.6548 32 1 1.0960 -5.1202 0.6592 33 1 2.1065 -4.0151 3.3365 34 1 1.4042 -5.2861 4.3654 35 1 2.1868 -5.7183 2.8259 36 1 -1.5619 -3.6562 2.8155 37 1 -0.7845 -4.0821 4.3593 38 1 -0.0825 -2.8108 3.3304 39 1 -0.7375 -6.5843 5.7880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324715144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:36 Heat of formation + Delta-G solvation = -51.481407 kcal Electronic energy + Delta-G solvation = -21951.294596 eV Core-core repulsion = 18666.017942 eV Total energy + Delta-G solvation = -3285.276654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90154 -38.87536 -37.30401 -36.37242 -34.02671 -33.27067 -31.11618 -30.33665 -28.22596 -25.86376 -25.73272 -25.18145 -23.77518 -22.37712 -20.45745 -18.85964 -18.53584 -17.67728 -17.23702 -15.99542 -15.91242 -15.42873 -14.86040 -14.65474 -14.40782 -13.94621 -13.64884 -13.12969 -13.07205 -12.92747 -12.77244 -12.56342 -12.22091 -12.06156 -11.81670 -11.39852 -11.21943 -10.89194 -10.68236 -10.40561 -10.26138 -10.08610 -9.73569 -9.65155 -9.47813 -9.25312 -9.07672 -8.79495 -8.50989 -8.35562 -6.03202 -4.13499 0.67898 0.94078 2.81333 3.24174 3.26477 3.35165 3.39024 3.48422 3.74834 4.38516 4.43246 4.47531 4.84894 4.85880 5.11575 5.23670 5.25751 5.40751 5.42828 5.63422 5.85985 6.00027 6.18064 6.28506 6.28718 6.48761 6.72062 6.82400 6.90199 6.96885 7.00539 7.33634 7.33913 7.54507 7.68076 7.69435 7.95328 7.99456 8.12535 8.36024 8.54913 8.87256 9.52508 10.98238 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.004233 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.968044 B = 6612.474490 C = 6784.139890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.007 3.993 3 C -0.189 4.189 4 C 0.135 3.865 5 N -0.507 5.507 6 C 0.348 3.652 7 O -0.474 6.474 8 C -0.189 4.189 9 C 0.564 3.436 10 O -0.545 6.545 11 N -0.699 5.699 12 C 0.131 3.869 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.144 0.856 28 H 0.163 0.837 29 H 0.405 0.595 30 H 0.400 0.600 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.006 0.994 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.005 0.995 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 14.689 -7.238 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.001 4.001 3 C -0.209 4.209 4 C -0.022 4.022 5 N -0.227 5.227 6 C 0.168 3.832 7 O -0.281 6.281 8 C -0.196 4.196 9 C 0.348 3.652 10 O -0.424 6.424 11 N -0.349 5.349 12 C 0.009 3.991 13 C 0.055 3.945 14 C -0.189 4.189 15 C -0.188 4.188 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.161 0.839 28 H 0.181 0.819 29 H 0.264 0.736 30 H 0.235 0.765 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.104 0.896 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.024 0.976 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.255 14.203 -7.175 16.757 hybrid contribution -1.071 -0.750 0.010 1.307 sum 4.184 13.453 -7.165 15.805 Atomic orbital electron populations 1.20967 0.89338 1.04173 1.03834 1.20332 0.97104 0.91008 0.91647 1.21977 0.95466 0.98609 1.04826 1.22628 0.91535 0.95109 0.92904 1.67235 1.41934 0.98211 1.15291 1.19106 0.85501 0.85600 0.92953 1.84722 1.74376 1.34799 1.34215 1.21122 0.94256 0.95569 1.08625 1.17769 0.78978 0.83697 0.84793 1.90786 1.55211 1.65045 1.31389 1.46320 1.57306 1.23727 1.07499 1.21805 0.94804 0.81643 1.00887 1.18372 0.93525 0.94886 0.87720 1.21827 0.96170 0.96637 1.04232 1.21833 0.97718 0.94946 1.04344 1.21006 1.36669 1.04024 0.92693 0.92355 1.24880 0.95607 0.97492 0.95515 1.69814 1.46932 1.38439 0.97202 0.86517 0.79408 0.83816 0.78154 1.19751 1.21051 1.21068 0.89482 0.90269 0.90256 0.83860 0.81944 0.73553 0.76484 0.92495 0.92425 0.97488 0.89591 0.95340 0.95396 0.89539 0.97602 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.69 36.00 0.35 -0.99 16 2 C 0.01 0.09 5.95 -103.93 -0.62 -0.53 16 3 C -0.19 -1.78 9.79 -39.50 -0.39 -2.16 16 4 C 0.14 1.36 11.17 -17.49 -0.20 1.16 16 5 N -0.51 -6.80 10.37 -12.98 -0.13 -6.94 16 6 C 0.35 5.10 7.77 -16.61 -0.13 4.97 16 7 O -0.47 -6.82 13.02 -17.97 -0.23 -7.05 16 8 C -0.19 -2.82 5.66 -104.69 -0.59 -3.41 16 9 C 0.56 10.04 5.42 -12.47 -0.07 9.97 16 10 O -0.55 -11.35 17.11 5.29 0.09 -11.26 16 11 N -0.70 -12.78 4.96 -61.35 -0.30 -13.09 16 12 C 0.13 2.76 4.50 -4.04 -0.02 2.74 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 20 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 26 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 27 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.41 4.11 9.06 45.56 0.41 4.52 16 30 H 0.40 6.97 6.15 -40.82 -0.25 6.72 16 31 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 34 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -30.75 324.67 -6.17 -36.92 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.48 Total: 8.08 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -1.50 Total: -4.14 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.08 Total: -43.04 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.14 Total: -18.31 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.75 -6.17 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324715144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.560 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds