Wall clock time and date at job start Tue Mar 31 2020 00:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38383 * 120.82571 * 2 1 4 4 C 1.38317 * 119.45852 * 179.97438 * 3 2 1 5 5 N 1.31904 * 121.18759 * 359.97438 * 4 3 2 6 6 C 1.32219 * 121.80008 * 359.72638 * 5 4 3 7 7 O 1.35427 * 119.79614 * 180.27003 * 6 5 4 8 8 C 1.39950 * 120.82704 * 179.97438 * 2 1 3 9 9 C 1.47527 * 120.59705 * 359.97438 * 8 2 1 10 10 O 1.21583 * 119.99867 * 90.00300 * 9 8 2 11 11 N 1.34777 * 119.99863 * 269.99991 * 9 8 2 12 12 C 1.46499 * 119.99665 * 179.72391 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48495 * 109.47265 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46830 * 120.00397 * 20 18 16 23 23 H 1.48503 * 109.47108 * 240.00004 * 20 18 16 24 24 H 1.09008 * 109.46874 * 270.02242 * 1 2 3 25 25 H 1.08997 * 109.47248 * 30.02241 * 1 2 3 26 26 H 1.08998 * 109.46945 * 150.02605 * 1 2 3 27 27 H 1.07999 * 120.26789 * 359.95491 * 3 2 1 28 28 H 1.07997 * 119.40124 * 180.02562 * 4 3 2 29 29 H 0.96709 * 113.99453 * 270.26606 * 7 6 5 30 30 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 31 31 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 32 32 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 33 33 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 34 34 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 36 36 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 37 37 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 38 38 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 39 39 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2161 1.1883 0.0000 4 6 3.5989 1.1553 0.0005 5 7 4.2548 0.0110 0.0016 6 6 3.6264 -1.1523 0.0075 7 8 4.3405 -2.3030 0.0138 8 6 2.2242 -1.2018 0.0005 9 6 1.5185 -2.4973 0.0017 10 8 1.2274 -3.0319 -1.0508 11 7 1.1966 -3.0883 1.1694 12 6 0.4905 -4.3719 1.1705 13 6 0.2421 -4.8162 2.6134 14 6 1.5812 -4.9701 3.3373 15 6 -0.6079 -3.7658 3.3312 16 6 -0.4837 -6.1369 2.6146 17 1 -0.7423 -6.6117 1.6796 18 6 -0.8175 -6.7390 3.8092 19 7 -0.5030 -6.1605 4.9476 20 14 -1.7178 -8.3758 3.8105 21 1 -1.9540 -8.8120 2.4109 22 1 -0.8949 -9.3926 4.5133 23 1 -3.0197 -8.2240 4.5086 24 1 -0.3633 0.0004 1.0278 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6941 2.1338 -0.0007 28 1 4.1514 2.0833 0.0010 29 1 4.5517 -2.6396 -0.8678 30 1 1.4286 -2.6617 2.0091 31 1 -0.4636 -4.2623 0.6548 32 1 1.0960 -5.1202 0.6592 33 1 2.1065 -4.0151 3.3365 34 1 1.4042 -5.2861 4.3654 35 1 2.1868 -5.7183 2.8259 36 1 -1.5619 -3.6562 2.8155 37 1 -0.7845 -4.0821 4.3593 38 1 -0.0825 -2.8108 3.3304 39 1 -0.7375 -6.5843 5.7880 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324715144.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:36 Heat of formation + Delta-G solvation = -75.120880 kcal Electronic energy + Delta-G solvation = -21952.319681 eV Core-core repulsion = 18666.017942 eV Total energy + Delta-G solvation = -3286.301738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.95134 -40.26426 -38.29318 -38.13500 -35.13605 -34.84084 -32.81570 -31.47369 -29.11168 -27.59937 -27.55789 -26.96733 -24.98076 -23.31624 -21.82459 -20.66105 -19.52732 -19.05288 -18.22495 -17.77946 -17.08847 -16.79129 -16.58878 -15.96457 -15.73738 -15.18481 -14.80845 -14.72705 -14.46626 -14.07343 -13.94199 -13.89764 -13.61731 -13.21899 -13.13740 -12.92569 -12.78535 -12.71398 -12.58616 -12.28758 -12.14963 -11.51722 -11.49831 -11.18572 -10.73270 -10.62959 -10.45476 -10.41571 -10.04632 -9.99395 -8.03051 -6.19153 -0.24612 0.05293 1.41566 1.42851 1.45772 1.55123 2.17957 2.38447 2.47419 2.72106 3.20783 3.49326 3.65746 3.74049 4.01972 4.28020 4.33626 4.44858 4.47287 4.59398 4.66419 4.68248 4.77595 4.94098 5.01880 5.06570 5.08716 5.15734 5.17848 5.29499 5.50283 5.50801 5.63767 5.66283 6.10662 6.18397 6.40934 6.42393 6.49145 6.80880 6.84827 7.10801 7.48847 8.96300 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.004233 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.968044 B = 6612.474490 C = 6784.139890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.001 3.999 3 C -0.170 4.170 4 C 0.140 3.860 5 N -0.527 5.527 6 C 0.333 3.667 7 O -0.492 6.492 8 C -0.215 4.215 9 C 0.572 3.428 10 O -0.582 6.582 11 N -0.696 5.696 12 C 0.147 3.853 13 C 0.051 3.949 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.527 4.527 17 H 0.047 0.953 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.947 3.053 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.280 1.280 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.049 0.951 27 H 0.189 0.811 28 H 0.205 0.795 29 H 0.417 0.583 30 H 0.405 0.595 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 17.342 -7.335 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.007 4.007 3 C -0.189 4.189 4 C -0.017 4.017 5 N -0.247 5.247 6 C 0.154 3.846 7 O -0.302 6.302 8 C -0.222 4.222 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.345 5.345 12 C 0.024 3.976 13 C 0.051 3.949 14 C -0.178 4.178 15 C -0.177 4.177 16 C -0.565 4.565 17 H 0.065 0.935 18 C -0.171 4.171 19 N -0.539 5.539 20 Si 0.773 3.227 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.206 1.206 24 H 0.112 0.888 25 H 0.131 0.869 26 H 0.068 0.932 27 H 0.206 0.794 28 H 0.222 0.778 29 H 0.278 0.722 30 H 0.242 0.758 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.367 16.869 -7.270 19.137 hybrid contribution -1.069 -1.466 0.010 1.814 sum 4.298 15.404 -7.260 17.563 Atomic orbital electron populations 1.21008 0.88513 1.04341 1.04287 1.20637 0.97835 0.90947 0.91275 1.22421 0.95226 0.99172 1.02104 1.23450 0.92388 0.95382 0.90449 1.67318 1.42521 0.98649 1.16230 1.19195 0.85405 0.86072 0.93928 1.84666 1.74519 1.35420 1.35615 1.20920 0.94430 0.94752 1.12093 1.18179 0.77932 0.84415 0.83694 1.90753 1.56597 1.66372 1.32538 1.46156 1.57307 1.22792 1.08224 1.21375 0.94314 0.82682 0.99258 1.18366 0.93439 0.94257 0.88865 1.21669 0.96186 0.97398 1.02523 1.21658 0.97742 0.95850 1.02470 1.21272 1.37364 1.05496 0.92387 0.93509 1.25465 0.96287 1.00076 0.95323 1.69919 1.47270 1.39290 0.97402 0.85681 0.78469 0.80623 0.77879 1.19884 1.20881 1.20617 0.88828 0.86931 0.93235 0.79411 0.77793 0.72174 0.75815 0.93489 0.94161 0.95295 0.91768 0.96333 0.95719 0.91874 0.94879 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.69 71.24 0.69 -1.67 16 2 C 0.00 0.03 5.95 -19.42 -0.12 -0.09 16 3 C -0.17 -2.43 9.79 22.32 0.22 -2.21 16 4 C 0.14 2.24 11.17 84.70 0.95 3.18 16 5 N -0.53 -13.03 10.37 -308.01 -3.19 -16.23 16 6 C 0.33 9.51 7.77 85.14 0.66 10.18 16 7 O -0.49 -14.33 13.02 -87.22 -1.14 -15.47 16 8 C -0.22 -6.25 5.66 -19.91 -0.11 -6.36 16 9 C 0.57 20.59 5.42 86.69 0.47 21.06 16 10 O -0.58 -24.91 17.11 -3.98 -0.07 -24.97 16 11 N -0.70 -25.55 4.96 -466.27 -2.31 -27.86 16 12 C 0.15 6.35 4.50 86.38 0.39 6.74 16 13 C 0.05 2.40 0.50 -52.93 -0.03 2.38 16 14 C -0.12 -5.56 8.08 71.98 0.58 -4.98 16 15 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 16 C -0.53 -27.88 8.01 25.60 0.21 -27.67 16 17 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 18 C 0.03 1.49 5.15 84.65 0.44 1.92 16 19 N -0.90 -48.19 9.35 21.45 0.20 -47.99 16 20 Si 0.95 42.58 29.54 68.60 2.03 44.61 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.11 1.33 8.10 -2.39 -0.02 1.31 16 26 H 0.05 1.24 7.19 -2.39 -0.02 1.23 16 27 H 0.19 1.01 8.06 -2.91 -0.02 0.99 16 28 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 29 H 0.42 8.81 9.06 -74.05 -0.67 8.14 16 30 H 0.41 13.89 6.15 -92.71 -0.57 13.32 16 31 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 34 H 0.06 3.27 6.07 -2.38 -0.01 3.26 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 38 H 0.03 1.24 6.86 -2.39 -0.02 1.23 16 39 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -67.85 324.67 0.29 -67.56 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.16 Total: 22.58 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 4.92 Total: -2.23 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -5.30 Total: -92.07 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.20 Total: -40.44 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -67.85 0.29 -67.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324715144.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.559 kcal (2) G-P(sol) polarization free energy of solvation -67.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds