Wall clock time and date at job start Tue Mar 31 2020 00:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00032 * 2 1 4 4 O 1.20825 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47271 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47170 * 180.02562 * 6 5 3 8 8 C 1.36940 * 119.99970 * 276.06726 * 7 6 5 9 9 H 1.07997 * 119.99423 * 42.77216 * 8 7 6 10 10 C 1.38811 * 120.00155 * 222.77113 * 8 7 6 11 11 N 1.31625 * 119.99718 * 11.44578 * 10 8 7 12 12 Si 1.86793 * 120.00094 * 191.44475 * 10 8 7 13 13 H 1.48505 * 109.46975 * 89.99979 * 12 10 8 14 14 H 1.48498 * 109.47393 * 209.99868 * 12 10 8 15 15 H 1.48496 * 109.47176 * 330.00451 * 12 10 8 16 16 C 1.46500 * 119.99988 * 96.06550 * 7 6 5 17 17 C 1.50704 * 109.47076 * 275.48677 * 16 7 6 18 18 N 1.31880 * 119.61668 * 83.95380 * 17 16 7 19 19 C 1.31860 * 121.72547 * 179.97438 * 18 17 16 20 20 C 1.38223 * 120.76159 * 359.97438 * 19 18 17 21 21 C 1.38629 * 119.16215 * 0.02562 * 20 19 18 22 22 C 1.38186 * 119.61324 * 263.95115 * 17 16 7 23 23 C 1.50688 * 120.42287 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.46840 * 60.00001 * 1 2 3 25 25 H 1.09004 * 109.47038 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47005 * 300.00399 * 1 2 3 27 27 H 1.09004 * 109.46836 * 59.99734 * 5 3 2 28 28 H 1.09000 * 109.47360 * 300.00100 * 5 3 2 29 29 H 1.08997 * 109.47027 * 60.00077 * 6 5 3 30 30 H 1.09005 * 109.47240 * 299.99911 * 6 5 3 31 31 H 0.96996 * 119.99880 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.46957 * 155.48829 * 16 7 6 33 33 H 1.08994 * 109.47626 * 35.48755 * 16 7 6 34 34 H 1.08002 * 119.61905 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.42075 * 180.02562 * 20 19 18 36 36 H 1.08005 * 120.78543 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47616 * 266.52816 * 23 22 17 38 38 H 1.09000 * 109.47096 * 26.53186 * 23 22 17 39 39 H 1.09001 * 109.47388 * 146.52947 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1535 2.7300 1.1791 9 1 5.8668 1.9970 1.9187 10 6 7.2217 3.5820 1.4239 11 7 7.4330 4.6154 0.6365 12 14 8.3590 3.2621 2.8707 13 1 9.4779 2.3874 2.4368 14 1 8.9028 4.5516 3.3675 15 1 7.6006 2.5930 3.9580 16 6 6.1877 2.9903 -1.2620 17 6 6.3918 1.6455 -1.9108 18 7 5.4322 1.1272 -2.6523 19 6 5.5666 -0.0457 -3.2396 20 6 6.7297 -0.7787 -3.0968 21 6 7.7607 -0.2662 -2.3247 22 6 7.5823 0.9699 -1.7220 23 6 8.6734 1.5691 -0.8727 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9564 0.7805 -0.8892 28 1 3.9558 0.7809 0.8908 29 1 3.6101 3.2367 0.8893 30 1 3.6108 3.2356 -0.8907 31 1 8.1796 5.2106 0.8074 32 1 7.1564 3.4495 -1.0651 33 1 5.6104 3.6312 -1.9282 34 1 4.7585 -0.4382 -3.8391 35 1 6.8340 -1.7387 -3.5807 36 1 8.6810 -0.8166 -2.1958 37 1 9.3646 2.1237 -1.5073 38 1 8.2331 2.2439 -0.1385 39 1 9.2116 0.7733 -0.3579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331129313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:39 Heat of formation + Delta-G solvation = -35.151735 kcal Electronic energy + Delta-G solvation = -22289.548002 eV Core-core repulsion = 19004.979456 eV Total energy + Delta-G solvation = -3284.568546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04122 -39.65755 -36.41448 -35.71977 -33.07294 -32.04370 -31.79914 -29.77679 -27.49631 -26.91010 -25.72210 -24.41500 -22.18072 -21.57979 -20.53791 -19.87392 -17.26203 -16.87071 -16.28286 -16.15017 -15.97499 -15.52515 -14.81267 -14.28172 -14.21215 -13.70465 -13.48219 -13.11090 -12.76803 -12.71011 -12.51854 -12.17808 -12.02186 -11.97780 -11.82203 -11.52774 -11.15725 -10.92660 -10.68622 -10.63726 -10.55129 -10.20122 -10.07016 -9.89900 -9.88388 -9.09917 -8.81788 -8.58652 -8.09317 -6.66732 -5.94865 -3.60992 1.73936 1.86130 2.67525 3.11692 3.25792 3.35097 3.36517 4.29327 4.42350 5.00283 5.20203 5.21034 5.25143 5.27080 5.28213 5.46443 5.56480 5.59363 5.68731 5.72221 5.89406 5.98783 6.10054 6.20799 6.31861 6.39195 6.49985 6.54592 6.72602 6.74395 6.79415 7.02739 7.08388 7.12384 7.34633 7.55765 7.69269 8.17859 8.41192 8.71257 9.04774 9.60447 10.24478 11.06345 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.007490 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.763674 B = 3737.408956 C = 5255.166296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.465 3.535 4 O -0.514 6.514 5 C -0.136 4.136 6 C 0.167 3.833 7 N -0.567 5.567 8 C -0.263 4.263 9 H 0.061 0.939 10 C 0.021 3.979 11 N -0.885 5.885 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.183 3.817 17 C 0.131 3.869 18 N -0.483 5.483 19 C 0.079 3.921 20 C -0.193 4.193 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.131 4.131 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.260 0.740 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.142 0.858 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.117 0.883 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -9.574 -4.546 11.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.309 3.691 4 O -0.401 6.401 5 C -0.176 4.176 6 C 0.040 3.960 7 N -0.285 5.285 8 C -0.393 4.393 9 H 0.078 0.922 10 C -0.180 4.180 11 N -0.527 5.527 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.200 1.200 16 C 0.057 3.943 17 C -0.010 4.010 18 N -0.192 5.192 19 C -0.078 4.078 20 C -0.213 4.213 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.188 4.188 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.062 0.938 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.135 0.865 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.971 -8.601 -4.614 10.537 hybrid contribution 1.193 -1.049 0.727 1.747 sum -2.778 -9.650 -3.887 10.768 Atomic orbital electron populations 1.23149 0.77637 1.02935 1.02214 1.86570 1.22576 1.34760 1.84575 1.24425 0.92736 0.80710 0.71231 1.90613 1.67463 1.36315 1.45744 1.22399 0.84702 1.05282 1.05247 1.20630 0.85100 0.89602 1.00659 1.43614 0.99199 1.83724 1.02008 1.19060 1.12204 1.13132 0.94910 0.92160 1.25344 1.00737 0.94428 0.97465 1.69892 1.30310 1.13631 1.38832 0.86459 0.81057 0.77538 0.82761 1.20721 1.21305 1.20010 1.20192 1.01468 0.87129 0.85556 1.23013 0.87667 0.99753 0.90532 1.67632 1.31618 1.11811 1.08171 1.22604 0.96323 0.91261 0.97613 1.21872 0.95756 1.01295 1.02423 1.21407 0.98556 0.95390 0.96129 1.20796 0.97466 0.95008 0.98436 1.21111 0.96093 1.01602 0.99979 0.92242 0.88757 0.92269 0.87710 0.88716 0.92668 0.93111 0.93000 0.86333 0.93814 0.84099 0.86151 0.86064 0.92217 0.86514 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -5.95 10.57 -39.24 -0.41 -6.37 16 3 C 0.47 8.64 7.96 36.01 0.29 8.93 16 4 O -0.51 -10.57 15.73 -18.75 -0.29 -10.86 16 5 C -0.14 -2.64 6.10 -27.88 -0.17 -2.81 16 6 C 0.17 3.68 5.01 -4.04 -0.02 3.66 16 7 N -0.57 -13.46 2.40 -174.61 -0.42 -13.88 16 8 C -0.26 -6.62 8.80 -15.06 -0.13 -6.75 16 9 H 0.06 1.53 7.85 -52.49 -0.41 1.12 16 10 C 0.02 0.53 3.27 -17.43 -0.06 0.47 16 11 N -0.89 -23.13 11.29 55.49 0.63 -22.50 16 12 Si 0.89 19.87 29.42 -169.99 -5.00 14.87 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 C 0.18 4.19 5.07 -5.19 -0.03 4.16 16 17 C 0.13 2.69 6.17 -82.59 -0.51 2.18 16 18 N -0.48 -9.36 8.59 -9.47 -0.08 -9.44 16 19 C 0.08 1.28 11.18 -17.55 -0.20 1.09 16 20 C -0.19 -2.86 10.11 -39.44 -0.40 -3.25 16 21 C -0.09 -1.43 9.87 -39.28 -0.39 -1.82 16 22 C -0.11 -2.17 5.90 -104.49 -0.62 -2.79 16 23 C -0.13 -2.48 9.31 36.00 0.34 -2.14 16 24 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.10 2.08 6.16 -51.93 -0.32 1.76 16 28 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.05 1.27 8.05 -51.93 -0.42 0.85 16 30 H 0.05 1.13 7.84 -51.93 -0.41 0.73 16 31 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.12 2.88 3.94 -51.93 -0.20 2.68 16 33 H 0.04 1.02 7.94 -51.93 -0.41 0.60 16 34 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.12 2.56 3.23 -51.93 -0.17 2.40 16 39 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -28.17 324.94 -6.79 -34.96 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.28 Total: 5.90 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.83 Total: 2.41 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.13 Total: -45.82 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.71 Total: -17.23 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.00 Total: 14.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.17 -6.79 -34.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331129313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.187 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds