Wall clock time and date at job start Tue Mar 31 2020 00:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00032 * 2 1 4 4 O 1.20825 * 119.99835 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47271 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47170 * 180.02562 * 6 5 3 8 8 C 1.36940 * 119.99970 * 276.06726 * 7 6 5 9 9 H 1.07997 * 119.99423 * 42.77216 * 8 7 6 10 10 C 1.38811 * 120.00155 * 222.77113 * 8 7 6 11 11 N 1.31625 * 119.99718 * 11.44578 * 10 8 7 12 12 Si 1.86793 * 120.00094 * 191.44475 * 10 8 7 13 13 H 1.48505 * 109.46975 * 89.99979 * 12 10 8 14 14 H 1.48498 * 109.47393 * 209.99868 * 12 10 8 15 15 H 1.48496 * 109.47176 * 330.00451 * 12 10 8 16 16 C 1.46500 * 119.99988 * 96.06550 * 7 6 5 17 17 C 1.50704 * 109.47076 * 275.48677 * 16 7 6 18 18 N 1.31880 * 119.61668 * 83.95380 * 17 16 7 19 19 C 1.31860 * 121.72547 * 179.97438 * 18 17 16 20 20 C 1.38223 * 120.76159 * 359.97438 * 19 18 17 21 21 C 1.38629 * 119.16215 * 0.02562 * 20 19 18 22 22 C 1.38186 * 119.61324 * 263.95115 * 17 16 7 23 23 C 1.50688 * 120.42287 * 0.02562 * 22 17 16 24 24 H 1.09003 * 109.46840 * 60.00001 * 1 2 3 25 25 H 1.09004 * 109.47038 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47005 * 300.00399 * 1 2 3 27 27 H 1.09004 * 109.46836 * 59.99734 * 5 3 2 28 28 H 1.09000 * 109.47360 * 300.00100 * 5 3 2 29 29 H 1.08997 * 109.47027 * 60.00077 * 6 5 3 30 30 H 1.09005 * 109.47240 * 299.99911 * 6 5 3 31 31 H 0.96996 * 119.99880 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.46957 * 155.48829 * 16 7 6 33 33 H 1.08994 * 109.47626 * 35.48755 * 16 7 6 34 34 H 1.08002 * 119.61905 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.42075 * 180.02562 * 20 19 18 36 36 H 1.08005 * 120.78543 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47616 * 266.52816 * 23 22 17 38 38 H 1.09000 * 109.47096 * 26.53186 * 23 22 17 39 39 H 1.09001 * 109.47388 * 146.52947 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1535 2.7300 1.1791 9 1 5.8668 1.9970 1.9187 10 6 7.2217 3.5820 1.4239 11 7 7.4330 4.6154 0.6365 12 14 8.3590 3.2621 2.8707 13 1 9.4779 2.3874 2.4368 14 1 8.9028 4.5516 3.3675 15 1 7.6006 2.5930 3.9580 16 6 6.1877 2.9903 -1.2620 17 6 6.3918 1.6455 -1.9108 18 7 5.4322 1.1272 -2.6523 19 6 5.5666 -0.0457 -3.2396 20 6 6.7297 -0.7787 -3.0968 21 6 7.7607 -0.2662 -2.3247 22 6 7.5823 0.9699 -1.7220 23 6 8.6734 1.5691 -0.8727 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.9564 0.7805 -0.8892 28 1 3.9558 0.7809 0.8908 29 1 3.6101 3.2367 0.8893 30 1 3.6108 3.2356 -0.8907 31 1 8.1796 5.2106 0.8074 32 1 7.1564 3.4495 -1.0651 33 1 5.6104 3.6312 -1.9282 34 1 4.7585 -0.4382 -3.8391 35 1 6.8340 -1.7387 -3.5807 36 1 8.6810 -0.8166 -2.1958 37 1 9.3646 2.1237 -1.5073 38 1 8.2331 2.2439 -0.1385 39 1 9.2116 0.7733 -0.3579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331129313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:38 Heat of formation + Delta-G solvation = -50.175186 kcal Electronic energy + Delta-G solvation = -22290.199468 eV Core-core repulsion = 19004.979456 eV Total energy + Delta-G solvation = -3285.220012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48367 -41.03349 -37.96368 -37.31157 -34.53710 -33.80733 -33.23271 -31.39578 -28.72238 -28.41335 -27.27693 -26.08575 -23.67237 -23.03135 -22.00034 -21.49065 -18.84720 -18.54307 -17.69414 -17.54992 -17.34236 -16.89269 -16.59244 -15.84531 -15.62902 -15.33309 -14.89072 -14.57580 -14.32000 -14.15044 -13.80123 -13.70180 -13.53969 -13.34599 -13.25504 -12.98629 -12.84190 -12.57109 -12.47644 -12.32144 -11.98304 -11.81981 -11.66166 -11.62777 -11.51364 -10.54564 -10.42166 -10.12851 -9.48130 -8.54067 -7.84591 -5.55933 0.40649 0.56186 1.18530 1.48818 1.52235 1.58743 1.80005 2.50310 2.99793 3.27440 3.70859 3.77000 4.02180 4.08320 4.15333 4.21149 4.29645 4.32467 4.33686 4.34438 4.41596 4.67827 4.74816 4.76002 4.87992 4.89307 4.96798 5.01541 5.10986 5.24141 5.37323 5.39624 5.53211 5.60834 5.70308 5.72480 6.08764 6.49510 6.74735 7.15256 7.34254 7.73816 8.36454 9.14642 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.007490 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.763674 B = 3737.408956 C = 5255.166296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.121 4.121 6 C 0.173 3.827 7 N -0.579 5.579 8 C -0.271 4.271 9 H 0.054 0.946 10 C -0.009 4.009 11 N -0.912 5.912 12 Si 0.945 3.055 13 H -0.269 1.269 14 H -0.293 1.293 15 H -0.274 1.274 16 C 0.192 3.808 17 C 0.106 3.894 18 N -0.506 5.506 19 C 0.071 3.929 20 C -0.174 4.174 21 C -0.086 4.086 22 C -0.133 4.133 23 C -0.129 4.129 24 H 0.061 0.939 25 H 0.135 0.865 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.257 0.743 32 H 0.102 0.898 33 H 0.021 0.979 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.153 0.847 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -12.783 -5.229 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.318 3.682 4 O -0.429 6.429 5 C -0.161 4.161 6 C 0.046 3.954 7 N -0.298 5.298 8 C -0.401 4.401 9 H 0.072 0.928 10 C -0.208 4.208 11 N -0.555 5.555 12 Si 0.772 3.228 13 H -0.195 1.195 14 H -0.219 1.219 15 H -0.199 1.199 16 C 0.066 3.934 17 C -0.032 4.032 18 N -0.216 5.216 19 C -0.086 4.086 20 C -0.194 4.194 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.186 4.186 24 H 0.080 0.920 25 H 0.153 0.847 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.039 0.961 34 H 0.190 0.810 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.840 -11.842 -5.306 13.533 hybrid contribution 1.047 -0.150 0.832 1.346 sum -2.794 -11.992 -4.473 13.100 Atomic orbital electron populations 1.23555 0.74946 1.05704 1.02442 1.86528 1.25087 1.32888 1.83856 1.24070 0.92296 0.81124 0.70739 1.90607 1.67884 1.37331 1.47059 1.22041 0.85824 1.02972 1.05245 1.20478 0.84582 0.91318 0.99000 1.43696 0.99628 1.84357 1.02166 1.19146 1.12573 1.12957 0.95434 0.92813 1.25833 1.01651 0.94066 0.99243 1.70015 1.30742 1.14512 1.40217 0.85651 0.79740 0.77110 0.80255 1.19501 1.21940 1.19919 1.19886 0.99833 0.88733 0.84974 1.22440 0.89244 0.99036 0.92530 1.67523 1.31741 1.13621 1.08724 1.23208 0.98029 0.90238 0.97110 1.22334 0.94170 1.02298 1.00589 1.21774 1.00181 0.94096 0.95120 1.20853 0.96823 0.96446 0.99402 1.21029 0.96337 1.01641 0.99632 0.92041 0.84724 0.92129 0.87671 0.88629 0.94626 0.94351 0.93308 0.88061 0.96053 0.81014 0.81749 0.82910 0.91597 0.89600 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -11.25 10.57 -51.35 -0.54 -11.79 16 3 C 0.47 17.44 7.96 71.24 0.57 18.00 16 4 O -0.54 -22.35 15.73 21.97 0.35 -22.00 16 5 C -0.12 -4.73 6.10 29.85 0.18 -4.55 16 6 C 0.17 7.95 5.01 86.38 0.43 8.39 16 7 N -0.58 -28.63 2.40 -706.33 -1.69 -30.32 16 8 C -0.27 -14.04 8.80 84.03 0.74 -13.30 16 9 H 0.05 2.80 7.85 -2.91 -0.02 2.78 16 10 C -0.01 -0.48 3.27 84.86 0.28 -0.20 16 11 N -0.91 -49.41 11.29 21.65 0.24 -49.17 16 12 Si 0.95 41.26 29.42 68.60 2.02 43.28 16 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 14 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 C 0.19 9.20 5.07 85.63 0.43 9.64 16 17 C 0.11 4.41 6.17 42.54 0.26 4.68 16 18 N -0.51 -19.25 8.59 -183.88 -1.58 -20.83 16 19 C 0.07 2.10 11.18 84.68 0.95 3.04 16 20 C -0.17 -4.36 10.11 22.36 0.23 -4.14 16 21 C -0.09 -2.46 9.87 22.47 0.22 -2.24 16 22 C -0.13 -4.89 5.90 -19.78 -0.12 -5.01 16 23 C -0.13 -4.83 9.31 71.23 0.66 -4.17 16 24 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 25 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 27 H 0.11 4.15 6.16 -2.38 -0.01 4.14 16 28 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 29 H 0.04 1.73 8.05 -2.39 -0.02 1.71 16 30 H 0.04 1.81 7.84 -2.38 -0.02 1.79 16 31 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.10 5.19 3.94 -2.38 -0.01 5.18 16 33 H 0.02 1.06 7.94 -2.39 -0.02 1.04 16 34 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.09 3.82 3.23 -2.39 -0.01 3.81 16 39 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 Total: -1.00 -62.98 324.94 5.88 -57.10 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 1.05 Total: 21.81 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.03 Total: 11.92 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -3.03 Total: -100.32 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.20 Total: -33.79 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.02 Total: 43.28 kcal Total: -62.98 5.88 -57.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331129313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.929 kcal (2) G-P(sol) polarization free energy of solvation -62.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds