Wall clock time and date at job start Mon Mar 30 2020 23:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38363 * 119.85393 * 2 1 4 4 C 1.37956 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39576 * 119.84932 * 0.28830 * 4 3 2 6 6 C 1.47851 * 120.13897 * 179.71861 * 5 4 3 7 7 O 1.21548 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99572 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47108 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.46724 * 295.00085 * 10 9 8 12 12 C 1.53001 * 109.46887 * 174.99724 * 10 9 8 13 13 O 1.42892 * 109.47254 * 304.99932 * 12 10 9 14 14 N 1.46499 * 109.46780 * 54.99785 * 10 9 8 15 15 C 1.36933 * 119.99985 * 204.99736 * 14 10 9 16 16 H 1.08003 * 119.99684 * 0.02562 * 15 14 10 17 17 C 1.38809 * 120.00479 * 180.02562 * 15 14 10 18 18 N 1.31620 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00344 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47275 * 60.00011 * 19 17 15 21 21 H 1.48502 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47302 * 300.00239 * 19 17 15 23 23 C 1.39570 * 119.71446 * 359.45852 * 5 4 3 24 24 C 1.37965 * 119.85310 * 0.51608 * 23 5 4 25 25 H 1.09004 * 109.47541 * 89.99459 * 1 2 3 26 26 H 1.08999 * 109.46991 * 209.99514 * 1 2 3 27 27 H 1.08999 * 109.47659 * 329.99637 * 1 2 3 28 28 H 1.08008 * 119.92400 * 359.96175 * 3 2 1 29 29 H 1.08002 * 120.07114 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00513 * 0.02562 * 8 6 5 31 31 H 1.09004 * 109.46896 * 299.99924 * 9 8 6 32 32 H 1.08997 * 109.47343 * 59.99699 * 9 8 6 33 33 H 1.08995 * 109.46956 * 65.00204 * 12 10 9 34 34 H 1.09004 * 109.46805 * 185.00033 * 12 10 9 35 35 H 0.96707 * 113.99886 * 180.02562 * 13 12 10 36 36 H 0.96996 * 120.00598 * 25.00548 * 14 10 9 37 37 H 0.97000 * 119.99897 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.07846 * 180.23172 * 23 5 4 39 39 H 1.07994 * 119.93049 * 179.74166 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0001 -0.0050 6 6 5.7546 0.0002 -0.0108 7 8 6.3623 1.0528 -0.0111 8 7 6.4285 -1.1671 -0.0156 9 6 7.8935 -1.1670 -0.0207 10 6 8.4035 -2.6095 -0.0262 11 1 8.1184 -3.0992 0.9049 12 6 9.9279 -2.6109 -0.1573 13 8 10.3069 -1.8682 -1.3177 14 7 7.8154 -3.3311 -1.1574 15 6 7.6871 -4.6935 -1.1084 16 1 8.0191 -5.2360 -0.2355 17 6 7.1303 -5.3773 -2.1804 18 7 6.7261 -4.7161 -3.2443 19 14 6.9546 -7.2358 -2.1131 20 1 6.0936 -7.6103 -0.9626 21 1 6.3362 -7.7205 -3.3732 22 1 8.2949 -7.8542 -1.9503 23 6 3.5753 -1.2069 0.0004 24 6 2.1957 -1.2000 0.0004 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6520 2.1333 -0.0006 29 1 4.1116 2.1445 0.0010 30 1 5.9435 -2.0071 -0.0157 31 1 8.2537 -0.6513 -0.9109 32 1 8.2599 -0.6550 0.8690 33 1 10.3691 -2.1524 0.7276 34 1 10.2836 -3.6371 -0.2506 35 1 11.2619 -1.8273 -1.4640 36 1 7.5169 -2.8438 -1.9412 37 1 6.3374 -5.1940 -3.9936 38 1 4.1117 -2.1443 -0.0001 39 1 1.6521 -2.1332 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331817845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:31 Heat of formation + Delta-G solvation = -55.840751 kcal Electronic energy + Delta-G solvation = -21245.688443 eV Core-core repulsion = 17960.222753 eV Total energy + Delta-G solvation = -3285.465689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95666 -38.36705 -37.04385 -34.89156 -33.56199 -32.82037 -31.40052 -30.79534 -28.50424 -27.38783 -25.07735 -23.65004 -22.59355 -22.11423 -20.09941 -19.86659 -17.90993 -17.28803 -16.60868 -15.99619 -15.31049 -15.12014 -14.79615 -14.67355 -14.34799 -13.91288 -13.82587 -13.51298 -13.41348 -13.28905 -12.87851 -12.75394 -12.34630 -12.10466 -11.79438 -11.58238 -11.39509 -10.97683 -10.89052 -10.84888 -10.57237 -10.14125 -9.80198 -9.60368 -9.35300 -8.99010 -8.94619 -8.76656 -8.46057 -7.05284 -5.82360 -3.13169 0.95014 1.42662 3.10326 3.37846 3.43097 3.44575 3.60655 4.01451 4.51321 4.74252 4.79076 4.93040 4.97663 5.11985 5.24032 5.39561 5.42651 5.44831 5.51697 5.56976 5.66169 5.68456 5.89736 5.96886 6.03297 6.04013 6.05593 6.32395 6.38918 6.47436 6.51245 6.53437 6.75095 6.89697 6.96846 7.60598 7.98052 8.21173 8.34422 8.60822 9.46535 10.01888 10.38613 11.38992 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.005133 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.712821 B = 5453.710732 C = 7144.721564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.134 4.134 4 C -0.059 4.059 5 C -0.134 4.134 6 C 0.553 3.447 7 O -0.553 6.553 8 N -0.707 5.707 9 C 0.118 3.882 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 N -0.713 5.713 15 C -0.250 4.250 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.925 5.925 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.287 1.287 23 C -0.075 4.075 24 C -0.128 4.128 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.408 0.592 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.049 0.951 35 H 0.364 0.636 36 H 0.389 0.611 37 H 0.257 0.743 38 H 0.133 0.867 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 8.116 8.426 13.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.068 4.068 3 C -0.152 4.152 4 C -0.078 4.078 5 C -0.137 4.137 6 C 0.340 3.660 7 O -0.433 6.433 8 N -0.358 5.358 9 C -0.006 4.006 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 N -0.355 5.355 15 C -0.381 4.381 16 H 0.088 0.912 17 C -0.203 4.203 18 N -0.572 5.572 19 Si 0.737 3.263 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.094 4.094 24 C -0.146 4.146 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.246 0.754 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.208 0.792 36 H 0.224 0.776 37 H 0.067 0.933 38 H 0.151 0.849 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.315 8.711 8.396 14.139 hybrid contribution 0.389 -1.568 -0.304 1.644 sum -6.927 7.143 8.092 12.825 Atomic orbital electron populations 1.20839 0.91120 1.02820 1.02536 1.20115 0.96173 0.93245 0.97313 1.20973 0.93847 0.97627 1.02801 1.21234 0.93744 0.97736 0.95118 1.20025 0.93217 0.94375 1.06131 1.18255 0.87003 0.84021 0.76684 1.90718 1.69972 1.31381 1.51228 1.45924 1.07981 1.08656 1.73279 1.21569 0.78767 0.98155 1.02104 1.20600 0.90138 0.90462 0.93417 0.91659 1.23024 0.98483 0.94682 0.85988 1.86574 1.26823 1.75678 1.47239 1.42376 1.72171 1.04214 1.16759 1.19171 1.34610 0.83219 1.01104 0.91244 1.24743 1.01449 0.97760 0.96392 1.69672 1.46461 1.34540 1.06546 0.86308 0.77689 0.85621 0.76719 1.21241 1.21701 1.21327 1.21472 0.94578 0.97568 0.95786 1.21002 0.93950 0.97781 1.01856 0.90896 0.91358 0.91491 0.85677 0.84838 0.75396 0.90480 0.92022 0.95510 0.93311 0.79158 0.77640 0.93348 0.84939 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.00 36.00 0.36 -0.59 16 2 C -0.07 -0.77 5.89 -104.53 -0.62 -1.39 16 3 C -0.13 -1.57 9.68 -39.64 -0.38 -1.96 16 4 C -0.06 -0.84 9.60 -39.19 -0.38 -1.21 16 5 C -0.13 -2.13 5.87 -104.97 -0.62 -2.75 16 6 C 0.55 10.19 7.77 -12.33 -0.10 10.10 16 7 O -0.55 -11.60 16.35 5.32 0.09 -11.51 16 8 N -0.71 -12.73 5.34 -61.25 -0.33 -13.05 16 9 C 0.12 2.17 5.12 -4.04 -0.02 2.15 16 10 C 0.17 3.16 2.84 -67.93 -0.19 2.96 16 11 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 12 C 0.06 1.04 6.86 37.16 0.25 1.29 16 13 O -0.56 -10.10 12.64 -35.23 -0.45 -10.54 16 14 N -0.71 -16.99 4.51 -53.43 -0.24 -17.23 16 15 C -0.25 -6.52 9.93 -15.06 -0.15 -6.67 16 16 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 19 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.08 -1.09 9.54 -39.18 -0.37 -1.46 16 24 C -0.13 -1.59 9.68 -39.64 -0.38 -1.98 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.13 1.85 7.65 -52.49 -0.40 1.45 16 30 H 0.41 7.27 6.17 -40.82 -0.25 7.01 16 31 H 0.08 1.59 7.39 -51.93 -0.38 1.21 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.36 4.72 9.12 45.56 0.42 5.14 16 36 H 0.39 10.35 7.80 -40.82 -0.32 10.03 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.13 1.90 6.41 -52.49 -0.34 1.57 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -32.29 334.65 -7.49 -39.78 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -4.62 Total: 19.21 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.69 Total: -1.78 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.16 Total: -56.69 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.36 Total: -22.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.29 -7.49 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331817845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.062 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds