Wall clock time and date at job start Mon Mar 30 2020 23:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38363 * 119.85393 * 2 1 4 4 C 1.37956 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39576 * 119.84932 * 0.28830 * 4 3 2 6 6 C 1.47851 * 120.13897 * 179.71861 * 5 4 3 7 7 O 1.21548 * 120.00104 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99404 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99572 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47108 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.46724 * 295.00085 * 10 9 8 12 12 C 1.53001 * 109.46887 * 174.99724 * 10 9 8 13 13 O 1.42892 * 109.47254 * 304.99932 * 12 10 9 14 14 N 1.46499 * 109.46780 * 54.99785 * 10 9 8 15 15 C 1.36933 * 119.99985 * 204.99736 * 14 10 9 16 16 H 1.08003 * 119.99684 * 0.02562 * 15 14 10 17 17 C 1.38809 * 120.00479 * 180.02562 * 15 14 10 18 18 N 1.31620 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00344 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47275 * 60.00011 * 19 17 15 21 21 H 1.48502 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47302 * 300.00239 * 19 17 15 23 23 C 1.39570 * 119.71446 * 359.45852 * 5 4 3 24 24 C 1.37965 * 119.85310 * 0.51608 * 23 5 4 25 25 H 1.09004 * 109.47541 * 89.99459 * 1 2 3 26 26 H 1.08999 * 109.46991 * 209.99514 * 1 2 3 27 27 H 1.08999 * 109.47659 * 329.99637 * 1 2 3 28 28 H 1.08008 * 119.92400 * 359.96175 * 3 2 1 29 29 H 1.08002 * 120.07114 * 180.02562 * 4 3 2 30 30 H 0.96996 * 120.00513 * 0.02562 * 8 6 5 31 31 H 1.09004 * 109.46896 * 299.99924 * 9 8 6 32 32 H 1.08997 * 109.47343 * 59.99699 * 9 8 6 33 33 H 1.08995 * 109.46956 * 65.00204 * 12 10 9 34 34 H 1.09004 * 109.46805 * 185.00033 * 12 10 9 35 35 H 0.96707 * 113.99886 * 180.02562 * 13 12 10 36 36 H 0.96996 * 120.00598 * 25.00548 * 14 10 9 37 37 H 0.97000 * 119.99897 * 179.97438 * 18 17 15 38 38 H 1.07995 * 120.07846 * 180.23172 * 23 5 4 39 39 H 1.07994 * 119.93049 * 179.74166 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2761 0.0001 -0.0050 6 6 5.7546 0.0002 -0.0108 7 8 6.3623 1.0528 -0.0111 8 7 6.4285 -1.1671 -0.0156 9 6 7.8935 -1.1670 -0.0207 10 6 8.4035 -2.6095 -0.0262 11 1 8.1184 -3.0992 0.9049 12 6 9.9279 -2.6109 -0.1573 13 8 10.3069 -1.8682 -1.3177 14 7 7.8154 -3.3311 -1.1574 15 6 7.6871 -4.6935 -1.1084 16 1 8.0191 -5.2360 -0.2355 17 6 7.1303 -5.3773 -2.1804 18 7 6.7261 -4.7161 -3.2443 19 14 6.9546 -7.2358 -2.1131 20 1 6.0936 -7.6103 -0.9626 21 1 6.3362 -7.7205 -3.3732 22 1 8.2949 -7.8542 -1.9503 23 6 3.5753 -1.2069 0.0004 24 6 2.1957 -1.2000 0.0004 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6520 2.1333 -0.0006 29 1 4.1116 2.1445 0.0010 30 1 5.9435 -2.0071 -0.0157 31 1 8.2537 -0.6513 -0.9109 32 1 8.2599 -0.6550 0.8690 33 1 10.3691 -2.1524 0.7276 34 1 10.2836 -3.6371 -0.2506 35 1 11.2619 -1.8273 -1.4640 36 1 7.5169 -2.8438 -1.9412 37 1 6.3374 -5.1940 -3.9936 38 1 4.1117 -2.1443 -0.0001 39 1 1.6521 -2.1332 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331817845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:30 Heat of formation + Delta-G solvation = -79.935119 kcal Electronic energy + Delta-G solvation = -21246.733253 eV Core-core repulsion = 17960.222753 eV Total energy + Delta-G solvation = -3286.510499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23213 -39.58225 -38.54594 -36.42203 -35.27370 -33.92153 -33.03870 -31.89609 -30.18051 -28.45315 -26.41090 -25.59922 -23.63978 -23.23760 -21.65168 -21.14231 -19.53753 -18.80387 -18.17084 -17.40940 -16.76505 -16.27248 -16.20201 -15.98203 -15.79295 -15.35333 -15.12376 -14.82090 -14.63862 -14.54477 -14.36360 -14.08787 -13.69374 -13.07449 -12.99779 -12.83897 -12.71669 -12.63860 -12.53346 -12.29467 -11.97415 -11.88747 -11.73509 -11.11630 -10.91251 -10.72617 -10.13799 -9.96855 -9.62090 -9.01603 -7.89629 -5.19682 -0.15283 0.40697 1.50401 1.52224 1.58353 1.83088 2.22140 2.58034 2.87175 3.42185 3.60206 3.70766 3.82708 3.89251 3.98730 4.03521 4.04994 4.38795 4.42411 4.43427 4.54462 4.59483 4.77444 4.81023 4.85156 4.88284 4.98621 5.07351 5.20211 5.24161 5.33666 5.39244 5.47137 5.54819 5.59179 5.96234 6.28366 6.53200 7.06271 7.16297 7.36546 8.08051 8.34235 9.32964 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.005133 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.712821 B = 5453.710732 C = 7144.721564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.070 4.070 5 C -0.162 4.162 6 C 0.550 3.450 7 O -0.586 6.586 8 N -0.706 5.706 9 C 0.128 3.872 10 C 0.161 3.839 11 H 0.080 0.920 12 C 0.065 3.935 13 O -0.584 6.584 14 N -0.723 5.723 15 C -0.240 4.240 16 H 0.082 0.918 17 C -0.069 4.069 18 N -0.967 5.967 19 Si 0.970 3.030 20 H -0.274 1.274 21 H -0.302 1.302 22 H -0.282 1.282 23 C -0.086 4.086 24 C -0.134 4.134 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.129 0.871 30 H 0.409 0.591 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.038 0.962 35 H 0.386 0.614 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.125 0.875 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 7.929 9.889 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.148 4.148 4 C -0.089 4.089 5 C -0.165 4.165 6 C 0.339 3.661 7 O -0.469 6.469 8 N -0.357 5.357 9 C 0.004 3.996 10 C 0.052 3.948 11 H 0.098 0.902 12 C -0.016 4.016 13 O -0.391 6.391 14 N -0.363 5.363 15 C -0.371 4.371 16 H 0.100 0.900 17 C -0.262 4.262 18 N -0.617 5.617 19 Si 0.799 3.201 20 H -0.200 1.200 21 H -0.229 1.229 22 H -0.209 1.209 23 C -0.104 4.104 24 C -0.152 4.152 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.175 0.825 29 H 0.147 0.853 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.234 0.766 36 H 0.203 0.797 37 H 0.057 0.943 38 H 0.143 0.857 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.570 8.518 9.919 15.633 hybrid contribution 0.777 -1.422 -0.700 1.765 sum -7.793 7.095 9.220 14.003 Atomic orbital electron populations 1.20930 0.88281 1.04380 1.03594 1.20563 0.98163 0.92462 0.94793 1.21327 0.92801 0.99315 1.01359 1.21356 0.95035 0.96913 0.95558 1.19934 0.91652 0.95788 1.09122 1.18726 0.88273 0.83440 0.75695 1.90680 1.70933 1.32296 1.53007 1.45923 1.07893 1.08733 1.73115 1.21433 0.79047 0.97533 1.01602 1.20854 0.91380 0.90325 0.92268 0.90194 1.22868 0.96778 0.94563 0.87380 1.86527 1.29141 1.75676 1.47754 1.42478 1.72763 1.03726 1.17325 1.19586 1.32370 0.84305 1.00880 0.90025 1.25487 1.02444 1.01782 0.96445 1.69847 1.48617 1.35886 1.07341 0.85280 0.77657 0.80815 0.76333 1.19986 1.22885 1.20864 1.21485 0.95683 0.96721 0.96555 1.21303 0.93129 0.99399 1.01338 0.89865 0.90199 0.89660 0.82528 0.85267 0.75324 0.93092 0.90270 0.91562 0.94364 0.76647 0.79657 0.94254 0.85725 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.00 71.23 0.71 -0.72 16 2 C -0.06 -1.19 5.89 -19.81 -0.12 -1.31 16 3 C -0.13 -2.77 9.68 22.23 0.22 -2.56 16 4 C -0.07 -1.95 9.60 22.53 0.22 -1.74 16 5 C -0.16 -5.25 5.87 -20.09 -0.12 -5.37 16 6 C 0.55 20.97 7.77 86.79 0.67 21.64 16 7 O -0.59 -25.46 16.35 -3.87 -0.06 -25.52 16 8 N -0.71 -26.11 5.34 -465.96 -2.49 -28.60 16 9 C 0.13 4.74 5.12 86.38 0.44 5.18 16 10 C 0.16 6.05 2.84 44.99 0.13 6.18 16 11 H 0.08 2.78 8.08 -2.39 -0.02 2.76 16 12 C 0.06 2.16 6.86 71.98 0.49 2.65 16 13 O -0.58 -20.65 12.64 -148.98 -1.88 -22.53 16 14 N -0.72 -34.71 4.51 -322.95 -1.46 -36.16 16 15 C -0.24 -12.45 9.93 84.03 0.83 -11.61 16 16 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 17 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 18 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 19 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 C -0.09 -2.49 9.54 22.53 0.21 -2.28 16 24 C -0.13 -3.14 9.68 22.23 0.22 -2.92 16 25 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 27 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.13 3.64 7.65 -2.91 -0.02 3.62 16 30 H 0.41 15.01 6.17 -92.71 -0.57 14.44 16 31 H 0.05 2.16 7.39 -2.39 -0.02 2.14 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.39 9.54 9.12 -74.05 -0.68 8.87 16 36 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 37 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.12 3.71 6.41 -2.91 -0.02 3.69 16 39 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -70.66 334.65 -0.08 -70.75 By element: Atomic # 1 Polarization: 50.50 SS G_CDS: -0.88 Total: 49.62 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 4.38 Total: 3.81 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -3.66 Total: -122.52 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -1.95 Total: -48.05 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.66 -0.08 -70.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331817845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.186 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds