Wall clock time and date at job start Mon Mar 30 2020 23:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38362 * 119.85083 * 2 1 4 4 C 1.37954 * 120.14702 * 179.97438 * 3 2 1 5 5 C 1.39574 * 119.84837 * 359.97438 * 4 3 2 6 6 C 1.47849 * 120.14153 * 179.97438 * 5 4 3 7 7 O 1.21559 * 120.00244 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99969 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99681 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47085 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.46812 * 64.99732 * 10 9 8 12 12 C 1.52997 * 109.47452 * 184.99949 * 10 9 8 13 13 O 1.42906 * 109.47007 * 54.99567 * 12 10 9 14 14 N 1.46506 * 109.46831 * 305.00177 * 10 9 8 15 15 C 1.36936 * 119.99838 * 154.99889 * 14 10 9 16 16 H 1.07999 * 120.00085 * 0.02562 * 15 14 10 17 17 C 1.38815 * 119.99824 * 179.97438 * 15 14 10 18 18 N 1.31614 * 119.99977 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99851 * 0.02562 * 17 15 14 20 20 H 1.48510 * 109.47172 * 90.00024 * 19 17 15 21 21 H 1.48505 * 109.47204 * 209.99615 * 19 17 15 22 22 H 1.48497 * 109.47650 * 329.99971 * 19 17 15 23 23 C 1.39571 * 119.71661 * 0.25048 * 5 4 3 24 24 C 1.37963 * 119.85038 * 359.51632 * 23 5 4 25 25 H 1.09006 * 109.46828 * 90.00342 * 1 2 3 26 26 H 1.08999 * 109.46771 * 209.99845 * 1 2 3 27 27 H 1.08990 * 109.47358 * 329.99966 * 1 2 3 28 28 H 1.08008 * 119.92482 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.07715 * 179.97438 * 4 3 2 30 30 H 0.96998 * 120.00301 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47818 * 59.99929 * 9 8 6 32 32 H 1.09001 * 109.47363 * 299.99334 * 9 8 6 33 33 H 1.08998 * 109.47192 * 174.99730 * 12 10 9 34 34 H 1.09000 * 109.46875 * 295.00133 * 12 10 9 35 35 H 0.96700 * 113.99791 * 179.97438 * 13 12 10 36 36 H 0.97000 * 119.99812 * 334.99233 * 14 10 9 37 37 H 0.97001 * 119.99985 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.07330 * 179.72333 * 23 5 4 39 39 H 1.07994 * 119.92845 * 180.22784 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2000 0.0000 4 6 3.5753 1.2072 0.0005 5 6 4.2762 0.0002 0.0016 6 6 5.7547 0.0003 0.0016 7 8 6.3624 1.0530 0.0002 8 7 6.4286 -1.1669 0.0021 9 6 7.8936 -1.1667 0.0016 10 6 8.4038 -2.6092 0.0017 11 1 8.1150 -3.0968 -0.9295 12 6 9.9286 -2.6110 0.1268 13 8 10.3122 -1.8708 1.2875 14 7 7.8200 -3.3335 1.1336 15 6 7.6915 -4.6958 1.0817 16 1 8.0209 -5.2364 0.2067 17 6 7.1389 -5.3821 2.1544 18 7 7.0159 -6.6916 2.1048 19 14 6.5700 -4.4471 3.6681 20 1 5.1462 -4.0583 3.5037 21 1 6.7115 -5.3125 4.8667 22 1 7.3997 -3.2273 3.8376 23 6 3.5754 -1.2068 -0.0031 24 6 2.1958 -1.1999 0.0012 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6520 2.1333 -0.0004 29 1 4.1117 2.1445 0.0001 30 1 5.9437 -2.0070 0.0029 31 1 8.2574 -0.6523 0.8910 32 1 8.2566 -0.6536 -0.8889 33 1 10.2847 -3.6373 0.2163 34 1 10.3663 -2.1504 -0.7588 35 1 11.2677 -1.8302 1.4301 36 1 7.5247 -2.8480 1.9196 37 1 6.6294 -7.1711 2.8542 38 1 4.1120 -2.1441 -0.0069 39 1 1.6523 -2.1331 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331817849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:33 Heat of formation + Delta-G solvation = -77.636410 kcal Electronic energy + Delta-G solvation = -21350.239968 eV Core-core repulsion = 18063.829148 eV Total energy + Delta-G solvation = -3286.410820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27460 -39.63113 -38.64020 -36.49402 -35.34210 -33.96902 -33.27575 -31.94990 -30.66470 -28.51581 -26.43884 -25.29470 -23.66764 -23.25768 -21.73656 -21.19671 -19.97482 -18.84371 -18.30799 -17.43733 -16.78728 -16.34832 -16.20566 -16.15043 -15.81770 -15.35488 -15.05348 -14.86309 -14.63057 -14.60337 -14.45465 -14.23031 -14.10174 -13.23821 -13.02730 -12.93694 -12.76281 -12.67613 -12.55931 -12.40499 -11.97586 -11.88002 -11.80948 -11.16421 -10.98285 -10.76857 -10.18891 -9.99552 -9.65296 -9.35144 -8.02580 -5.34922 -0.18360 0.38092 1.35697 1.39946 1.45507 1.80019 2.16199 2.46722 2.84198 3.28570 3.43337 3.66871 3.68450 3.80025 3.92459 3.98801 4.02590 4.34443 4.37689 4.40860 4.50117 4.58715 4.74526 4.77041 4.80624 4.86606 4.95153 5.05235 5.13688 5.22287 5.30365 5.36506 5.42593 5.57263 5.76820 5.93575 6.21008 6.47916 7.01206 7.07263 7.12007 7.81388 8.00643 9.18293 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.005442 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.582397 B = 5143.851525 C = 6501.543622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.068 4.068 5 C -0.163 4.163 6 C 0.552 3.448 7 O -0.582 6.582 8 N -0.712 5.712 9 C 0.126 3.874 10 C 0.165 3.835 11 H 0.083 0.917 12 C 0.065 3.935 13 O -0.584 6.584 14 N -0.741 5.741 15 C -0.223 4.223 16 H 0.070 0.930 17 C -0.049 4.049 18 N -0.977 5.977 19 Si 0.937 3.063 20 H -0.274 1.274 21 H -0.300 1.300 22 H -0.269 1.269 23 C -0.089 4.089 24 C -0.135 4.135 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.157 0.843 29 H 0.131 0.869 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.388 0.612 36 H 0.362 0.638 37 H 0.257 0.743 38 H 0.127 0.873 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.142 14.529 -6.441 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.148 4.148 4 C -0.087 4.087 5 C -0.166 4.166 6 C 0.341 3.659 7 O -0.464 6.464 8 N -0.363 5.363 9 C 0.002 3.998 10 C 0.057 3.943 11 H 0.101 0.899 12 C -0.015 4.015 13 O -0.391 6.391 14 N -0.384 5.384 15 C -0.353 4.353 16 H 0.088 0.912 17 C -0.241 4.241 18 N -0.628 5.628 19 Si 0.767 3.233 20 H -0.200 1.200 21 H -0.227 1.227 22 H -0.195 1.195 23 C -0.108 4.108 24 C -0.153 4.153 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.174 0.826 29 H 0.149 0.851 30 H 0.247 0.753 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.195 0.805 37 H 0.066 0.934 38 H 0.145 0.855 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.319 15.093 -6.485 18.886 hybrid contribution 0.600 -0.600 1.142 1.423 sum -8.720 14.493 -5.342 17.737 Atomic orbital electron populations 1.20937 0.88381 1.04207 1.03752 1.20564 0.98129 0.92511 0.94732 1.21329 0.92888 0.99259 1.01284 1.21360 0.94965 0.96976 0.95400 1.19933 0.91698 0.95723 1.09243 1.18687 0.88167 0.83415 0.75670 1.90697 1.70853 1.32220 1.52662 1.45975 1.07960 1.08814 1.73551 1.21488 0.78933 0.97075 1.02347 1.20839 0.91429 0.90293 0.91781 0.89920 1.22800 0.96324 0.94707 0.87692 1.86473 1.29362 1.75764 1.47522 1.42737 1.74649 1.03474 1.17558 1.19031 1.32149 0.82772 1.01398 0.91238 1.25223 1.02449 0.95806 1.00635 1.69836 1.52589 1.07366 1.32981 0.85678 0.78886 0.78146 0.80631 1.20005 1.22657 1.19500 1.21518 0.95665 0.96835 0.96735 1.21315 0.93245 0.99390 1.01327 0.89420 0.90502 0.89863 0.82582 0.85142 0.75291 0.92265 0.89843 0.94500 0.91194 0.76347 0.80495 0.93415 0.85482 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.01 71.24 0.71 -0.61 16 2 C -0.06 -1.10 5.89 -19.81 -0.12 -1.21 16 3 C -0.13 -2.53 9.68 22.23 0.22 -2.32 16 4 C -0.07 -1.75 9.60 22.52 0.22 -1.54 16 5 C -0.16 -4.85 5.87 -20.09 -0.12 -4.96 16 6 C 0.55 19.22 7.77 86.79 0.67 19.90 16 7 O -0.58 -23.36 16.35 -3.90 -0.06 -23.42 16 8 N -0.71 -23.85 5.34 -465.95 -2.49 -26.34 16 9 C 0.13 4.21 5.12 86.38 0.44 4.65 16 10 C 0.17 5.84 2.84 44.99 0.13 5.97 16 11 H 0.08 2.81 8.08 -2.39 -0.02 2.79 16 12 C 0.07 2.05 6.86 71.98 0.49 2.55 16 13 O -0.58 -18.71 12.64 -148.98 -1.88 -20.60 16 14 N -0.74 -32.84 4.31 -322.92 -1.39 -34.24 16 15 C -0.22 -11.83 10.41 84.03 0.87 -10.96 16 16 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 17 C -0.05 -2.77 5.50 84.86 0.47 -2.31 16 18 N -0.98 -60.29 13.97 21.65 0.30 -59.99 16 19 Si 0.94 45.54 27.74 68.60 1.90 47.44 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 22 H -0.27 -12.73 6.52 99.48 0.65 -12.09 16 23 C -0.09 -2.37 9.54 22.53 0.21 -2.16 16 24 C -0.13 -2.94 9.68 22.23 0.22 -2.72 16 25 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 28 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.13 3.37 7.65 -2.91 -0.02 3.35 16 30 H 0.41 13.48 6.17 -92.71 -0.57 12.90 16 31 H 0.06 2.22 7.39 -2.39 -0.02 2.21 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.39 8.50 9.12 -74.06 -0.68 7.83 16 36 H 0.36 16.68 5.66 -92.71 -0.52 16.16 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.13 3.41 6.41 -2.91 -0.02 3.39 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -71.89 331.53 0.05 -71.84 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -0.75 Total: 41.03 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 4.42 Total: 4.27 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -3.58 Total: -120.57 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.95 Total: -44.02 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -71.89 0.05 -71.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331817849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.796 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds