Wall clock time and date at job start Tue Mar 31 2020 00:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99397 * 2 1 4 4 C 1.50695 * 120.00111 * 179.97438 * 2 1 3 5 5 H 1.09002 * 109.47307 * 5.00718 * 4 2 1 6 6 C 1.52998 * 109.47315 * 244.99988 * 4 2 1 7 7 O 1.45205 * 109.47021 * 125.00267 * 4 2 1 8 8 C 1.34750 * 117.00363 * 210.00369 * 7 4 2 9 9 O 1.21531 * 119.99734 * 359.97438 * 8 7 4 10 10 C 1.47287 * 120.00334 * 180.02562 * 8 7 4 11 11 C 1.41343 * 126.42421 * 359.97075 * 10 8 7 12 12 N 1.30429 * 108.00976 * 180.02562 * 11 10 8 13 13 N 1.39926 * 108.92424 * 359.97438 * 12 11 10 14 14 C 1.46491 * 125.74841 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46957 * 90.02368 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34227 * 108.51030 * 0.26454 * 13 12 11 24 24 C 1.50694 * 126.29821 * 179.73832 * 23 13 12 25 25 H 1.07999 * 120.00289 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99776 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46356 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47046 * 299.99415 * 3 2 1 29 29 H 1.09000 * 109.47008 * 60.00164 * 3 2 1 30 30 H 1.09003 * 109.46958 * 59.99883 * 6 4 2 31 31 H 1.09005 * 109.47083 * 180.02562 * 6 4 2 32 32 H 1.08997 * 109.47134 * 300.00365 * 6 4 2 33 33 H 1.08004 * 125.99586 * 359.97438 * 11 10 8 34 34 H 1.09004 * 109.47166 * 330.02634 * 14 13 12 35 35 H 1.08994 * 109.47507 * 210.02340 * 14 13 12 36 36 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47303 * 89.99922 * 24 23 13 38 38 H 1.09004 * 109.47706 * 210.00193 * 24 23 13 39 39 H 1.09000 * 109.47395 * 329.99807 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3586 -2.1317 -0.0887 6 6 2.8465 -1.4413 1.3080 7 8 2.9856 -1.3320 -1.1208 8 6 3.2662 -2.5376 -1.6533 9 8 2.7547 -3.5392 -1.1927 10 6 4.1937 -2.6417 -2.7927 11 6 4.8618 -1.5723 -3.4313 12 7 5.5901 -2.0686 -4.3928 13 7 5.4264 -3.4581 -4.4153 14 6 6.0753 -4.3813 -5.3494 15 6 7.3883 -4.8414 -4.7702 16 1 7.7073 -4.4824 -3.8028 17 6 8.1796 -5.7257 -5.4725 18 7 9.3228 -6.1314 -4.9646 19 14 7.6277 -6.3472 -7.1454 20 1 8.1359 -5.4378 -8.2036 21 1 8.1645 -7.7139 -7.3674 22 1 6.1440 -6.3841 -7.1949 23 6 4.5696 -3.8020 -3.4410 24 6 4.1056 -5.1976 -3.1127 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 3.1351 1.1060 0.0005 28 1 1.8001 1.8767 -0.8901 29 1 1.8000 1.8768 0.8900 30 1 2.1543 -1.4210 2.1498 31 1 3.3919 -2.3851 1.3081 32 1 3.5513 -0.6148 1.3972 33 1 4.7825 -0.5275 -3.1697 34 1 6.2544 -3.8732 -6.2970 35 1 5.4296 -5.2435 -5.5157 36 1 9.8795 -6.7532 -5.4588 37 1 4.7797 -5.6419 -2.3804 38 1 3.0971 -5.1579 -2.7010 39 1 4.1042 -5.8028 -4.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344711337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:22 Heat of formation + Delta-G solvation = -5.442142 kcal Electronic energy + Delta-G solvation = -21306.464030 eV Core-core repulsion = 18023.183788 eV Total energy + Delta-G solvation = -3283.280242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97836 -39.82832 -37.01537 -35.06252 -33.94032 -32.24770 -31.45245 -30.50458 -28.08863 -27.55733 -26.93148 -24.29685 -23.04311 -22.10848 -20.23097 -19.11542 -18.65642 -17.46254 -17.25473 -16.37884 -15.73470 -15.43863 -14.75137 -14.61821 -14.28781 -14.07060 -13.69064 -13.57159 -13.19257 -12.83333 -12.65852 -12.57644 -12.41772 -12.35733 -12.13765 -11.90104 -11.76712 -11.71836 -11.26278 -10.90086 -10.86063 -10.55605 -10.41998 -10.35365 -9.87843 -9.80503 -9.38067 -8.87735 -8.71921 -8.12864 -6.35646 -4.40819 1.78087 1.87897 2.64293 2.89317 3.09801 3.14742 3.17899 3.35069 3.63610 4.13013 4.47402 4.70401 4.89076 4.96358 5.06718 5.09357 5.16254 5.34377 5.38542 5.49497 5.51048 5.58418 5.67434 5.75267 5.83585 5.89817 5.96923 5.98762 6.20740 6.30429 6.32120 6.39310 6.52604 6.56502 6.75828 6.99756 7.14255 7.46665 8.13848 8.16335 8.27419 8.67367 9.17800 10.76534 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036336 B = 0.003615 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.397194 B = 7742.762606 C = 7881.208700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.119 4.119 3 C -0.117 4.117 4 C 0.122 3.878 5 H 0.088 0.912 6 C -0.165 4.165 7 O -0.346 6.346 8 C 0.551 3.449 9 O -0.530 6.530 10 C -0.315 4.315 11 C 0.084 3.916 12 N -0.295 5.295 13 N -0.311 5.311 14 C 0.224 3.776 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.882 5.882 19 Si 0.874 3.126 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.175 3.825 24 C -0.097 4.097 25 H 0.105 0.895 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.187 0.813 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.271 0.729 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.598 9.479 8.076 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.119 4.119 3 C -0.173 4.173 4 C 0.067 3.933 5 H 0.106 0.894 6 C -0.223 4.223 7 O -0.263 6.263 8 C 0.399 3.601 9 O -0.421 6.421 10 C -0.328 4.328 11 C -0.103 4.103 12 N -0.114 5.114 13 N -0.086 5.086 14 C 0.105 3.895 15 C -0.585 4.585 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.518 5.518 19 Si 0.700 3.300 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.189 1.189 23 C 0.038 3.962 24 C -0.155 4.155 25 H 0.124 0.876 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.204 0.796 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.653 9.257 7.108 18.733 hybrid contribution -0.610 -0.576 -0.109 0.846 sum -15.263 8.681 6.999 18.902 Atomic orbital electron populations 1.23757 0.94921 1.02363 1.00826 1.21602 0.94923 0.95086 1.00275 1.20789 1.00909 0.93838 1.01782 1.21585 0.90747 0.96016 0.84928 0.89387 1.22159 1.00992 1.03268 0.95832 1.86617 1.60320 1.33277 1.46132 1.20029 0.78452 0.80754 0.80895 1.90746 1.52180 1.37084 1.62041 1.18825 1.14272 0.93582 1.06145 1.23941 0.93836 0.99515 0.93041 1.77217 1.22856 0.88778 1.22507 1.48942 1.30166 1.05382 1.24136 1.20205 0.94424 0.86568 0.88261 1.21081 1.01699 1.28310 1.07407 0.89968 1.24791 0.94462 0.95218 0.97858 1.69860 1.11359 1.32145 1.38457 0.86887 0.79578 0.79156 0.84388 1.19467 1.20371 1.18862 1.21437 0.89857 0.96393 0.88532 1.20641 1.03027 0.88940 1.02877 0.87639 0.88220 0.91177 0.91311 0.91716 0.90978 0.91439 0.91390 0.79639 0.92952 0.92876 0.91916 0.89157 0.88729 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 13.95 29.01 0.40 -1.16 16 2 C -0.12 -1.19 5.10 -101.07 -0.52 -1.70 16 3 C -0.12 -1.00 9.65 36.01 0.35 -0.65 16 4 C 0.12 1.48 2.70 -27.89 -0.08 1.41 16 5 H 0.09 1.13 6.81 -51.93 -0.35 0.78 16 6 C -0.17 -1.77 9.43 37.16 0.35 -1.42 16 7 O -0.35 -5.12 9.53 -40.63 -0.39 -5.51 16 8 C 0.55 9.49 7.93 34.41 0.27 9.77 16 9 O -0.53 -9.68 14.11 -19.29 -0.27 -9.95 16 10 C -0.31 -5.88 6.13 -105.08 -0.64 -6.52 16 11 C 0.08 1.52 11.87 -16.97 -0.20 1.32 16 12 N -0.29 -6.29 12.50 30.87 0.39 -5.90 16 13 N -0.31 -6.82 3.56 -57.77 -0.21 -7.03 16 14 C 0.22 5.15 5.04 -5.20 -0.03 5.12 16 15 C -0.55 -14.84 9.94 -34.44 -0.34 -15.19 16 16 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 19 Si 0.87 19.56 27.47 -169.99 -4.67 14.89 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.26 -5.49 6.54 56.52 0.37 -5.12 16 23 C 0.18 3.48 7.01 -81.59 -0.57 2.91 16 24 C -0.10 -1.65 9.56 36.00 0.34 -1.31 16 25 H 0.11 0.73 8.05 -52.49 -0.42 0.31 16 26 H 0.10 0.82 7.84 -52.48 -0.41 0.41 16 27 H 0.07 0.65 7.46 -51.93 -0.39 0.26 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 33 H 0.19 2.63 8.06 -52.48 -0.42 2.21 16 34 H 0.05 1.19 7.58 -51.93 -0.39 0.79 16 35 H 0.05 1.13 6.05 -51.93 -0.31 0.82 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 37 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.09 1.51 6.52 -51.93 -0.34 1.17 16 39 H 0.07 1.19 7.04 -51.93 -0.37 0.82 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -30.70 335.62 -5.57 -36.28 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.50 Total: 2.32 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.75 Total: -5.30 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.95 Total: -37.79 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.66 Total: -15.46 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.70 -5.57 -36.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344711337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.833 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds