Wall clock time and date at job start Tue Mar 31 2020 00:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50707 * 119.99397 * 2 1 4 4 C 1.50695 * 120.00111 * 179.97438 * 2 1 3 5 5 H 1.09002 * 109.47307 * 5.00718 * 4 2 1 6 6 C 1.52998 * 109.47315 * 244.99988 * 4 2 1 7 7 O 1.45205 * 109.47021 * 125.00267 * 4 2 1 8 8 C 1.34750 * 117.00363 * 210.00369 * 7 4 2 9 9 O 1.21531 * 119.99734 * 359.97438 * 8 7 4 10 10 C 1.47287 * 120.00334 * 180.02562 * 8 7 4 11 11 C 1.41343 * 126.42421 * 359.97075 * 10 8 7 12 12 N 1.30429 * 108.00976 * 180.02562 * 11 10 8 13 13 N 1.39926 * 108.92424 * 359.97438 * 12 11 10 14 14 C 1.46491 * 125.74841 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46957 * 90.02368 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34227 * 108.51030 * 0.26454 * 13 12 11 24 24 C 1.50694 * 126.29821 * 179.73832 * 23 13 12 25 25 H 1.07999 * 120.00289 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99776 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46356 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47046 * 299.99415 * 3 2 1 29 29 H 1.09000 * 109.47008 * 60.00164 * 3 2 1 30 30 H 1.09003 * 109.46958 * 59.99883 * 6 4 2 31 31 H 1.09005 * 109.47083 * 180.02562 * 6 4 2 32 32 H 1.08997 * 109.47134 * 300.00365 * 6 4 2 33 33 H 1.08004 * 125.99586 * 359.97438 * 11 10 8 34 34 H 1.09004 * 109.47166 * 330.02634 * 14 13 12 35 35 H 1.08994 * 109.47507 * 210.02340 * 14 13 12 36 36 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47303 * 89.99922 * 24 23 13 38 38 H 1.09004 * 109.47706 * 210.00193 * 24 23 13 39 39 H 1.09000 * 109.47395 * 329.99807 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 1.3586 -2.1317 -0.0887 6 6 2.8465 -1.4413 1.3080 7 8 2.9856 -1.3320 -1.1208 8 6 3.2662 -2.5376 -1.6533 9 8 2.7547 -3.5392 -1.1927 10 6 4.1937 -2.6417 -2.7927 11 6 4.8618 -1.5723 -3.4313 12 7 5.5901 -2.0686 -4.3928 13 7 5.4264 -3.4581 -4.4153 14 6 6.0753 -4.3813 -5.3494 15 6 7.3883 -4.8414 -4.7702 16 1 7.7073 -4.4824 -3.8028 17 6 8.1796 -5.7257 -5.4725 18 7 9.3228 -6.1314 -4.9646 19 14 7.6277 -6.3472 -7.1454 20 1 8.1359 -5.4378 -8.2036 21 1 8.1645 -7.7139 -7.3674 22 1 6.1440 -6.3841 -7.1949 23 6 4.5696 -3.8020 -3.4410 24 6 4.1056 -5.1976 -3.1127 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 3.1351 1.1060 0.0005 28 1 1.8001 1.8767 -0.8901 29 1 1.8000 1.8768 0.8900 30 1 2.1543 -1.4210 2.1498 31 1 3.3919 -2.3851 1.3081 32 1 3.5513 -0.6148 1.3972 33 1 4.7825 -0.5275 -3.1697 34 1 6.2544 -3.8732 -6.2970 35 1 5.4296 -5.2435 -5.5157 36 1 9.8795 -6.7532 -5.4588 37 1 4.7797 -5.6419 -2.3804 38 1 3.0971 -5.1579 -2.7010 39 1 4.1042 -5.8028 -4.0193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344711337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:20 Heat of formation + Delta-G solvation = -23.194488 kcal Electronic energy + Delta-G solvation = -21307.233830 eV Core-core repulsion = 18023.183788 eV Total energy + Delta-G solvation = -3284.050041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.47452 -41.09838 -38.11723 -36.08928 -35.77319 -34.04511 -32.99069 -31.43745 -29.82186 -28.42811 -28.21337 -25.59368 -24.66472 -23.41874 -21.65796 -20.53935 -19.62176 -19.30145 -18.83484 -17.56849 -17.01813 -16.87837 -16.38200 -15.84049 -15.72108 -15.21338 -15.00402 -14.66240 -14.52624 -14.12351 -13.98424 -13.84492 -13.77999 -13.62731 -13.30199 -13.19296 -13.07296 -12.74166 -12.58254 -12.55218 -12.14622 -11.92633 -11.83882 -11.77294 -11.53908 -11.26755 -10.92802 -10.34755 -10.08967 -9.68239 -8.43560 -6.56260 0.39245 0.98819 1.15098 1.33592 1.37149 1.44495 1.54075 2.05396 2.22483 2.24511 2.89116 3.60573 3.63173 3.72657 3.88947 3.93231 4.07513 4.17154 4.34038 4.38391 4.47406 4.63875 4.65367 4.71249 4.76334 4.80386 4.91179 4.98843 5.03492 5.04850 5.11800 5.15660 5.21333 5.44348 5.55025 5.63550 5.76640 5.86453 6.15977 6.46877 6.65987 6.89054 7.07664 8.72901 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036336 B = 0.003615 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.397194 B = 7742.762606 C = 7881.208700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.114 4.114 4 C 0.115 3.885 5 H 0.079 0.921 6 C -0.162 4.162 7 O -0.344 6.344 8 C 0.556 3.444 9 O -0.543 6.543 10 C -0.322 4.322 11 C 0.099 3.901 12 N -0.331 5.331 13 N -0.333 5.333 14 C 0.232 3.768 15 C -0.556 4.556 16 H 0.026 0.974 17 C 0.024 3.976 18 N -0.935 5.935 19 Si 0.950 3.050 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.232 1.232 23 C 0.163 3.837 24 C -0.093 4.093 25 H 0.127 0.873 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.275 0.725 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.021 10.302 7.527 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.171 4.171 4 C 0.061 3.939 5 H 0.097 0.903 6 C -0.219 4.219 7 O -0.261 6.261 8 C 0.404 3.596 9 O -0.435 6.435 10 C -0.335 4.335 11 C -0.089 4.089 12 N -0.150 5.150 13 N -0.109 5.109 14 C 0.112 3.888 15 C -0.593 4.593 16 H 0.045 0.955 17 C -0.177 4.177 18 N -0.573 5.573 19 Si 0.771 3.229 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.155 1.155 23 C 0.026 3.974 24 C -0.151 4.151 25 H 0.145 0.855 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.239 0.761 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.105 10.108 6.586 20.932 hybrid contribution 0.092 -0.722 0.256 0.772 sum -17.013 9.386 6.843 20.600 Atomic orbital electron populations 1.23991 0.94474 1.03504 0.98380 1.21600 0.95360 0.94438 1.02458 1.20789 1.00053 0.93350 1.02859 1.21882 0.90372 0.97233 0.84393 0.90329 1.22152 1.01355 1.02417 0.95991 1.86597 1.60790 1.31702 1.46967 1.19797 0.78007 0.81309 0.80526 1.90733 1.52632 1.37754 1.62412 1.19091 1.14426 0.93482 1.06485 1.24531 0.91942 1.00969 0.91420 1.77161 1.24574 0.88836 1.24420 1.48833 1.31339 1.05606 1.25128 1.19997 0.92769 0.87636 0.88354 1.21176 1.04047 1.28575 1.05551 0.95530 1.25823 0.94134 0.95079 1.02621 1.70022 1.13135 1.33313 1.40807 0.85692 0.80978 0.78315 0.77934 1.18866 1.20017 1.15493 1.21966 0.89399 0.97914 0.88076 1.20693 1.03276 0.87764 1.03345 0.85503 0.88066 0.92210 0.90881 0.90010 0.88790 0.93391 0.90730 0.76067 0.92354 0.90463 0.91601 0.89784 0.87601 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 13.95 67.78 0.95 -1.46 16 2 C -0.14 -2.46 5.10 -16.49 -0.08 -2.55 16 3 C -0.11 -1.69 9.65 71.24 0.69 -1.00 16 4 C 0.12 2.65 2.70 29.85 0.08 2.73 16 5 H 0.08 1.95 6.81 -2.39 -0.02 1.93 16 6 C -0.16 -3.28 9.43 71.98 0.68 -2.60 16 7 O -0.34 -9.77 9.53 -56.61 -0.54 -10.30 16 8 C 0.56 18.75 7.93 70.20 0.56 19.31 16 9 O -0.54 -19.56 14.11 19.74 0.28 -19.29 16 10 C -0.32 -11.83 6.13 -20.16 -0.12 -11.95 16 11 C 0.10 3.48 11.87 85.67 1.02 4.50 16 12 N -0.33 -14.10 12.50 -56.25 -0.70 -14.80 16 13 N -0.33 -14.64 3.56 -336.68 -1.20 -15.84 16 14 C 0.23 10.54 5.04 85.64 0.43 10.97 16 15 C -0.56 -30.99 9.94 25.60 0.25 -30.73 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 17 C 0.02 1.30 5.47 84.66 0.46 1.77 16 18 N -0.93 -56.00 13.96 21.45 0.30 -55.70 16 19 Si 0.95 39.63 27.47 68.60 1.88 41.51 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.28 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 23 C 0.16 6.43 7.01 42.16 0.30 6.73 16 24 C -0.09 -3.13 9.56 71.23 0.68 -2.45 16 25 H 0.13 1.30 8.05 -2.91 -0.02 1.27 16 26 H 0.10 1.42 7.84 -2.91 -0.02 1.40 16 27 H 0.06 1.00 7.46 -2.38 -0.02 0.98 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.07 1.40 7.51 -2.39 -0.02 1.38 16 33 H 0.22 5.84 8.06 -2.91 -0.02 5.82 16 34 H 0.06 2.57 7.58 -2.38 -0.02 2.56 16 35 H 0.08 3.12 6.05 -2.39 -0.01 3.11 16 36 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.11 3.29 6.52 -2.38 -0.02 3.28 16 39 H 0.09 2.67 7.04 -2.39 -0.02 2.66 16 Total: -1.00 -68.61 335.62 6.89 -61.72 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.99 Total: 19.44 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.88 Total: -6.74 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.60 Total: -86.34 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.26 Total: -29.59 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.88 Total: 41.51 kcal Total: -68.61 6.89 -61.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344711337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.524 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds