Wall clock time and date at job start Tue Mar 31 2020 00:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30428 * 125.99153 * 2 1 4 4 N 1.39931 * 108.91982 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74500 * 179.97438 * 4 3 2 6 6 C 1.34222 * 108.50971 * 359.72918 * 4 3 2 7 7 C 1.50700 * 126.29626 * 180.26612 * 6 4 3 8 8 C 1.38118 * 107.41041 * 0.42853 * 6 4 3 9 9 C 1.47288 * 126.42948 * 179.83767 * 8 6 4 10 10 O 1.21533 * 119.99807 * 269.71345 * 9 8 6 11 11 O 1.34750 * 120.00161 * 89.98582 * 9 8 6 12 12 C 1.45201 * 117.00036 * 179.72475 * 11 9 8 13 13 H 1.08997 * 109.47402 * 329.99898 * 12 11 9 14 14 C 1.50699 * 109.47198 * 210.00169 * 12 11 9 15 15 H 1.07998 * 120.00280 * 0.02562 * 14 12 11 16 16 C 1.37882 * 120.00299 * 180.02562 * 14 12 11 17 17 N 1.31512 * 119.99336 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00114 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47189 * 120.00206 * 18 16 14 21 21 H 1.48507 * 109.47058 * 239.99737 * 18 16 14 22 22 C 1.52998 * 109.47129 * 90.00350 * 12 11 9 23 23 C 1.53005 * 117.49743 * 8.74576 * 22 12 11 24 24 C 1.53003 * 117.50031 * 300.08692 * 22 12 11 25 25 H 1.09000 * 109.46549 * 269.97210 * 1 2 3 26 26 H 1.08996 * 109.47127 * 29.96996 * 1 2 3 27 27 H 1.09003 * 109.47030 * 149.97731 * 1 2 3 28 28 H 1.08998 * 109.47053 * 90.02741 * 5 4 3 29 29 H 1.09002 * 109.47125 * 210.02328 * 5 4 3 30 30 H 1.09000 * 109.47322 * 330.02429 * 5 4 3 31 31 H 1.09000 * 109.47103 * 270.19435 * 7 6 4 32 32 H 1.09007 * 109.47376 * 30.19494 * 7 6 4 33 33 H 1.09003 * 109.47462 * 150.19036 * 7 6 4 34 34 H 0.97007 * 119.99559 * 180.02562 * 17 16 14 35 35 H 1.08995 * 115.55118 * 154.41605 * 22 12 11 36 36 H 1.09000 * 117.49878 * 0.02562 * 23 22 12 37 37 H 1.08998 * 117.49808 * 145.01769 * 23 22 12 38 38 H 1.08989 * 117.50275 * 214.97968 * 24 22 12 39 39 H 1.09005 * 117.49679 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7784 1.5299 -0.0013 6 6 3.6449 -0.6973 0.0051 7 6 4.8815 -1.5586 0.0122 8 6 2.3378 -1.1435 -0.0006 9 6 1.8929 -2.5476 -0.0008 10 8 1.7094 -3.1267 -1.0534 11 8 1.6841 -3.1884 1.1660 12 6 1.2405 -4.5689 1.0898 13 1 0.6567 -4.7133 0.1808 14 6 0.3882 -4.8898 2.2905 15 1 0.1984 -4.1319 3.0361 16 6 -0.1494 -6.1509 2.4372 17 7 0.0821 -7.0740 1.5295 18 14 -1.2064 -6.5484 3.9251 19 1 -1.3132 -5.3471 4.7916 20 1 -2.5614 -6.9566 3.4749 21 1 -0.5846 -7.6577 4.6920 22 6 2.4580 -5.4952 1.0665 23 6 3.8284 -4.8674 1.3293 24 6 3.4537 -5.3246 -0.0827 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5133 27 1 -0.3633 -0.8898 -0.5142 28 1 5.0686 1.7493 1.0262 29 1 5.6053 1.0405 -0.5158 30 1 4.5296 2.4587 -0.5148 31 1 5.1846 -1.7676 -1.0137 32 1 5.6858 -1.0352 0.5293 33 1 4.6685 -2.4959 0.5263 34 1 -0.2964 -7.9612 1.6325 35 1 2.2875 -6.5053 1.4388 36 1 3.8625 -3.7947 1.5192 37 1 4.5594 -5.4647 1.8742 38 1 3.9383 -6.2224 -0.4662 39 1 3.2410 -4.5527 -0.8224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:52 Heat of formation + Delta-G solvation = 11.044061 kcal Electronic energy + Delta-G solvation = -22341.784958 eV Core-core repulsion = 19059.219612 eV Total energy + Delta-G solvation = -3282.565346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35157 -39.33418 -36.35616 -34.59841 -34.23659 -32.80347 -32.06501 -29.53461 -28.16891 -27.28657 -25.71618 -23.50395 -22.14889 -21.47299 -19.90540 -19.47579 -18.79157 -17.23733 -16.66682 -16.29390 -15.66482 -15.42761 -15.15665 -14.50701 -13.96192 -13.74907 -13.50190 -13.26773 -13.25355 -12.94272 -12.68574 -12.40988 -12.20266 -11.96201 -11.84667 -11.58000 -11.32613 -11.09438 -10.97209 -10.63427 -10.50939 -10.28310 -10.03509 -9.69371 -9.47649 -9.10624 -9.09033 -8.52534 -8.44858 -8.35446 -6.16915 -4.23387 1.74442 2.35435 2.58875 2.91720 3.25230 3.32637 3.37666 3.86594 4.34535 4.48155 4.54004 4.86266 4.93419 4.94808 5.06920 5.15608 5.19250 5.36928 5.42009 5.72397 5.77503 5.80365 5.87158 5.89163 6.03771 6.07757 6.10536 6.16534 6.46351 6.59669 6.71147 6.91158 6.93755 7.00655 7.21240 7.58707 7.61730 7.69597 7.86423 8.14247 8.67471 8.92883 9.41145 10.90378 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.005462 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.654646 B = 5124.695684 C = 5791.153096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.121 3.879 3 N -0.302 5.302 4 N -0.366 5.366 5 C 0.101 3.899 6 C 0.130 3.870 7 C -0.105 4.105 8 C -0.255 4.255 9 C 0.538 3.462 10 O -0.509 6.509 11 O -0.344 6.344 12 C 0.245 3.755 13 H 0.053 0.947 14 C -0.515 4.515 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.114 4.114 23 C -0.198 4.198 24 C -0.211 4.211 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 12.640 -2.231 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.124 5.124 4 N -0.147 5.147 5 C -0.041 4.041 6 C 0.000 4.000 7 C -0.163 4.163 8 C -0.268 4.268 9 C 0.379 3.621 10 O -0.398 6.398 11 O -0.259 6.259 12 C 0.192 3.808 13 H 0.071 0.929 14 C -0.553 4.553 15 H 0.089 0.911 16 C -0.138 4.138 17 N -0.523 5.523 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.133 4.133 23 C -0.235 4.235 24 C -0.248 4.248 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.075 0.925 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.271 13.608 -2.557 16.663 hybrid contribution -0.345 -1.280 0.645 1.474 sum 8.926 12.328 -1.912 15.340 Atomic orbital electron populations 1.20297 0.85883 1.03688 1.03846 1.22305 0.96969 0.88631 0.96643 1.77050 0.85811 1.22241 1.27323 1.48026 1.05859 1.03901 1.56875 1.21880 0.84177 0.94436 1.03566 1.21262 0.96010 0.84558 0.98207 1.20714 0.92119 0.99363 1.04081 1.19258 0.92223 0.92457 1.22840 1.19989 0.73759 0.85220 0.83089 1.90767 1.47883 1.67759 1.33393 1.86667 1.76219 1.31161 1.31871 1.20174 0.90570 0.70574 0.99461 0.92940 1.20991 1.29788 0.97604 1.06928 0.91116 1.24892 0.96335 0.95613 0.96990 1.69992 1.44255 1.04030 1.34026 0.86272 0.79759 0.78478 0.81973 1.19444 1.20756 1.20782 1.23027 0.89079 1.02622 0.98585 1.22870 1.01036 1.00381 0.99222 1.23168 1.06797 1.02861 0.91925 0.89576 0.90503 0.89973 0.90493 0.89381 0.89063 0.89480 0.90486 0.88440 0.92496 0.85230 0.89663 0.90375 0.90466 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.28 36.01 0.37 -0.78 16 2 C 0.12 2.09 7.27 -82.01 -0.60 1.49 16 3 N -0.30 -4.90 12.50 33.90 0.42 -4.48 16 4 N -0.37 -5.06 3.98 -63.33 -0.25 -5.31 16 5 C 0.10 0.81 11.05 59.85 0.66 1.47 16 6 C 0.13 1.99 7.01 -81.59 -0.57 1.42 16 7 C -0.10 -1.25 9.70 36.01 0.35 -0.90 16 8 C -0.26 -4.78 6.00 -105.08 -0.63 -5.41 16 9 C 0.54 11.81 6.07 34.41 0.21 12.01 16 10 O -0.51 -12.27 14.20 -19.29 -0.27 -12.55 16 11 O -0.34 -8.27 8.39 -40.63 -0.34 -8.61 16 12 C 0.24 6.47 2.41 -27.88 -0.07 6.40 16 13 H 0.05 1.54 7.16 -51.93 -0.37 1.17 16 14 C -0.52 -14.25 8.90 -34.44 -0.31 -14.56 16 15 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.06 1.74 5.20 -17.82 -0.09 1.64 16 17 N -0.89 -24.75 11.58 55.43 0.64 -24.11 16 18 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.11 -2.80 5.27 -90.62 -0.48 -3.28 16 23 C -0.20 -4.03 9.60 -26.69 -0.26 -4.29 16 24 C -0.21 -4.48 9.85 -26.69 -0.26 -4.74 16 25 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.27 8.01 -51.93 -0.42 0.85 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.49 7.64 -51.93 -0.40 0.09 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.66 7.71 -51.93 -0.40 0.26 16 33 H 0.10 1.36 5.65 -51.93 -0.29 1.06 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.13 3.45 6.46 -51.93 -0.34 3.11 16 36 H 0.09 1.69 4.86 -51.93 -0.25 1.43 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.08 1.51 8.14 -51.94 -0.42 1.09 16 39 H 0.09 2.08 5.36 -51.93 -0.28 1.80 16 LS Contribution 326.10 15.07 4.91 4.91 Total: -1.00 -32.56 326.10 -6.83 -39.39 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.25 Total: 4.43 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.67 Total: -9.52 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.81 Total: -33.90 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.61 Total: -21.16 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.56 -6.83 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.433 kcal (2) G-P(sol) polarization free energy of solvation -32.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds