Wall clock time and date at job start Tue Mar 31 2020 00:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30428 * 125.99153 * 2 1 4 4 N 1.39931 * 108.91982 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.74500 * 179.97438 * 4 3 2 6 6 C 1.34222 * 108.50971 * 359.72918 * 4 3 2 7 7 C 1.50700 * 126.29626 * 180.26612 * 6 4 3 8 8 C 1.38118 * 107.41041 * 0.42853 * 6 4 3 9 9 C 1.47288 * 126.42948 * 179.83767 * 8 6 4 10 10 O 1.21533 * 119.99807 * 269.71345 * 9 8 6 11 11 O 1.34750 * 120.00161 * 89.98582 * 9 8 6 12 12 C 1.45201 * 117.00036 * 179.72475 * 11 9 8 13 13 H 1.08997 * 109.47402 * 329.99898 * 12 11 9 14 14 C 1.50699 * 109.47198 * 210.00169 * 12 11 9 15 15 H 1.07998 * 120.00280 * 0.02562 * 14 12 11 16 16 C 1.37882 * 120.00299 * 180.02562 * 14 12 11 17 17 N 1.31512 * 119.99336 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00114 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47189 * 120.00206 * 18 16 14 21 21 H 1.48507 * 109.47058 * 239.99737 * 18 16 14 22 22 C 1.52998 * 109.47129 * 90.00350 * 12 11 9 23 23 C 1.53005 * 117.49743 * 8.74576 * 22 12 11 24 24 C 1.53003 * 117.50031 * 300.08692 * 22 12 11 25 25 H 1.09000 * 109.46549 * 269.97210 * 1 2 3 26 26 H 1.08996 * 109.47127 * 29.96996 * 1 2 3 27 27 H 1.09003 * 109.47030 * 149.97731 * 1 2 3 28 28 H 1.08998 * 109.47053 * 90.02741 * 5 4 3 29 29 H 1.09002 * 109.47125 * 210.02328 * 5 4 3 30 30 H 1.09000 * 109.47322 * 330.02429 * 5 4 3 31 31 H 1.09000 * 109.47103 * 270.19435 * 7 6 4 32 32 H 1.09007 * 109.47376 * 30.19494 * 7 6 4 33 33 H 1.09003 * 109.47462 * 150.19036 * 7 6 4 34 34 H 0.97007 * 119.99559 * 180.02562 * 17 16 14 35 35 H 1.08995 * 115.55118 * 154.41605 * 22 12 11 36 36 H 1.09000 * 117.49878 * 0.02562 * 23 22 12 37 37 H 1.08998 * 117.49808 * 145.01769 * 23 22 12 38 38 H 1.08989 * 117.50275 * 214.97968 * 24 22 12 39 39 H 1.09005 * 117.49679 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 -0.0006 5 6 4.7784 1.5299 -0.0013 6 6 3.6449 -0.6973 0.0051 7 6 4.8815 -1.5586 0.0122 8 6 2.3378 -1.1435 -0.0006 9 6 1.8929 -2.5476 -0.0008 10 8 1.7094 -3.1267 -1.0534 11 8 1.6841 -3.1884 1.1660 12 6 1.2405 -4.5689 1.0898 13 1 0.6567 -4.7133 0.1808 14 6 0.3882 -4.8898 2.2905 15 1 0.1984 -4.1319 3.0361 16 6 -0.1494 -6.1509 2.4372 17 7 0.0821 -7.0740 1.5295 18 14 -1.2064 -6.5484 3.9251 19 1 -1.3132 -5.3471 4.7916 20 1 -2.5614 -6.9566 3.4749 21 1 -0.5846 -7.6577 4.6920 22 6 2.4580 -5.4952 1.0665 23 6 3.8284 -4.8674 1.3293 24 6 3.4537 -5.3246 -0.0827 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5133 27 1 -0.3633 -0.8898 -0.5142 28 1 5.0686 1.7493 1.0262 29 1 5.6053 1.0405 -0.5158 30 1 4.5296 2.4587 -0.5148 31 1 5.1846 -1.7676 -1.0137 32 1 5.6858 -1.0352 0.5293 33 1 4.6685 -2.4959 0.5263 34 1 -0.2964 -7.9612 1.6325 35 1 2.2875 -6.5053 1.4388 36 1 3.8625 -3.7947 1.5192 37 1 4.5594 -5.4647 1.8742 38 1 3.9383 -6.2224 -0.4662 39 1 3.2410 -4.5527 -0.8224 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:51 Heat of formation + Delta-G solvation = -8.389110 kcal Electronic energy + Delta-G solvation = -22342.627644 eV Core-core repulsion = 19059.219612 eV Total energy + Delta-G solvation = -3283.408032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58496 -41.10685 -38.17161 -36.42932 -35.32670 -34.85935 -33.20651 -30.56024 -30.02506 -28.62603 -26.76917 -25.41934 -23.68185 -23.16423 -21.52789 -20.67371 -20.45990 -18.94353 -18.50731 -17.81543 -17.26508 -16.78614 -16.67277 -16.24740 -15.60137 -14.99106 -14.68770 -14.48344 -14.37453 -14.21700 -14.07038 -13.59329 -13.52984 -13.34705 -13.19490 -13.01524 -12.93884 -12.87308 -12.80076 -12.27222 -12.16125 -11.95851 -11.91982 -11.42131 -11.31314 -11.02806 -10.45596 -10.39983 -10.21039 -9.65690 -8.24588 -6.40547 0.57245 1.19338 1.22995 1.39003 1.43326 1.43788 1.57660 2.19159 2.47634 3.03396 3.17617 3.40361 3.49380 3.84291 4.08384 4.14065 4.23124 4.29436 4.31761 4.33077 4.41480 4.54124 4.63850 4.64560 4.69489 4.75002 4.84210 4.88101 4.91130 5.00634 5.10028 5.27599 5.34932 5.38594 5.53886 5.60096 5.88772 5.90401 6.11634 6.48189 6.63692 7.00351 7.29907 8.82998 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.005462 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.654646 B = 5124.695684 C = 5791.153096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.107 3.893 3 N -0.313 5.313 4 N -0.355 5.355 5 C 0.085 3.915 6 C 0.145 3.855 7 C -0.105 4.105 8 C -0.307 4.307 9 C 0.546 3.454 10 O -0.539 6.539 11 O -0.351 6.351 12 C 0.252 3.748 13 H 0.006 0.994 14 C -0.542 4.542 15 H 0.064 0.936 16 C 0.022 3.978 17 N -0.912 5.912 18 Si 0.977 3.023 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.272 1.272 22 C -0.150 4.150 23 C -0.166 4.166 24 C -0.197 4.197 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.269 0.731 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.430 14.014 -1.319 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 N -0.135 5.135 4 N -0.134 5.134 5 C -0.054 4.054 6 C 0.012 3.988 7 C -0.163 4.163 8 C -0.320 4.320 9 C 0.390 3.610 10 O -0.430 6.430 11 O -0.267 6.267 12 C 0.199 3.801 13 H 0.023 0.977 14 C -0.580 4.580 15 H 0.082 0.918 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.800 3.200 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.197 1.197 22 C -0.169 4.169 23 C -0.202 4.202 24 C -0.234 4.234 25 H 0.110 0.890 26 H 0.120 0.880 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.502 15.028 -1.651 18.996 hybrid contribution -0.948 -1.610 0.299 1.892 sum 10.554 13.418 -1.352 17.124 Atomic orbital electron populations 1.20329 0.85130 1.03934 1.04270 1.22567 0.97914 0.88434 0.96976 1.76990 0.87074 1.21848 1.27607 1.48508 1.06309 1.04054 1.54563 1.22456 0.82883 0.94401 1.05643 1.21677 0.95813 0.85528 0.95766 1.20873 0.91702 0.98240 1.05438 1.19277 0.94539 0.90627 1.27529 1.20488 0.72430 0.86196 0.81888 1.90732 1.49219 1.68906 1.34153 1.86655 1.76464 1.30239 1.33305 1.19791 0.91191 0.72257 0.96867 0.97675 1.21235 1.31240 0.98118 1.07388 0.91809 1.25745 0.97198 0.95108 0.99809 1.70113 1.44782 1.04386 1.35651 0.85226 0.77961 0.78449 0.78331 1.18928 1.20165 1.19679 1.22709 0.90356 1.01408 1.02437 1.22949 0.98164 1.00954 0.98160 1.23127 1.05082 1.03293 0.91887 0.89043 0.88040 0.91867 0.88428 0.86157 0.87886 0.87854 0.86183 0.90485 0.92158 0.87693 0.89014 0.87595 0.88556 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 10.28 71.24 0.73 -1.62 16 2 C 0.11 3.71 7.27 43.53 0.32 4.02 16 3 N -0.31 -9.72 12.50 -46.65 -0.58 -10.30 16 4 N -0.35 -8.86 3.98 -354.27 -1.41 -10.27 16 5 C 0.08 1.00 11.05 127.77 1.41 2.41 16 6 C 0.15 4.18 7.01 42.17 0.30 4.47 16 7 C -0.10 -2.17 9.70 71.24 0.69 -1.48 16 8 C -0.31 -11.58 6.00 -20.16 -0.12 -11.71 16 9 C 0.55 24.94 6.07 70.20 0.43 25.36 16 10 O -0.54 -27.42 14.20 19.73 0.28 -27.14 16 11 O -0.35 -17.60 8.39 -56.61 -0.47 -18.07 16 12 C 0.25 14.00 2.41 29.85 0.07 14.07 16 13 H 0.01 0.35 7.16 -2.39 -0.02 0.33 16 14 C -0.54 -31.18 8.90 25.60 0.23 -30.96 16 15 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 16 C 0.02 1.19 5.20 84.66 0.44 1.63 16 17 N -0.91 -52.53 11.58 21.45 0.25 -52.28 16 18 Si 0.98 43.26 29.54 68.60 2.03 45.29 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 C -0.15 -7.54 5.27 -10.79 -0.06 -7.60 16 23 C -0.17 -6.56 9.60 30.62 0.29 -6.27 16 24 C -0.20 -8.38 9.85 30.62 0.30 -8.08 16 25 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 2.10 8.01 -2.39 -0.02 2.08 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.12 0.69 7.64 -2.39 -0.02 0.67 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 1.43 7.71 -2.38 -0.02 1.41 16 33 H 0.08 1.98 5.65 -2.39 -0.01 1.96 16 34 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 35 H 0.11 5.78 6.46 -2.39 -0.02 5.77 16 36 H 0.09 3.53 4.86 -2.39 -0.01 3.52 16 37 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 38 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.08 3.75 5.36 -2.38 -0.01 3.74 16 Total: -1.00 -74.72 326.10 6.18 -68.54 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.07 Total: 19.96 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 5.03 Total: -15.73 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.74 Total: -72.84 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.19 Total: -45.21 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -74.72 6.18 -68.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.146 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds