Wall clock time and date at job start Tue Mar 31 2020 00:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30428 * 125.99432 * 2 1 4 4 N 1.39933 * 108.92010 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.74488 * 180.02562 * 4 3 2 6 6 C 1.34233 * 108.50990 * 359.72867 * 4 3 2 7 7 C 1.50696 * 126.29327 * 180.29627 * 6 4 3 8 8 C 1.38127 * 107.40877 * 0.42825 * 6 4 3 9 9 C 1.47277 * 126.42795 * 179.83477 * 8 6 4 10 10 O 1.21526 * 120.00376 * 269.71605 * 9 8 6 11 11 O 1.34760 * 120.00101 * 89.71302 * 9 8 6 12 12 C 1.45193 * 117.00097 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47372 * 30.00288 * 12 11 9 14 14 C 1.50697 * 109.47312 * 149.99992 * 12 11 9 15 15 H 1.08007 * 119.99868 * 34.96019 * 14 12 11 16 16 C 1.37878 * 120.00639 * 214.96213 * 14 12 11 17 17 N 1.31509 * 120.00258 * 184.84273 * 16 14 12 18 18 Si 1.86800 * 119.99437 * 4.84046 * 16 14 12 19 19 H 1.48500 * 109.47063 * 84.75562 * 18 16 14 20 20 H 1.48509 * 109.47014 * 204.74679 * 18 16 14 21 21 H 1.48492 * 109.47455 * 324.74774 * 18 16 14 22 22 C 1.52999 * 109.47498 * 270.00052 * 12 11 9 23 23 C 1.53000 * 117.49461 * 351.59356 * 22 12 11 24 24 C 1.53003 * 117.49611 * 60.24904 * 22 12 11 25 25 H 1.08999 * 109.47477 * 269.99943 * 1 2 3 26 26 H 1.09000 * 109.47352 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.47077 * 150.00029 * 1 2 3 28 28 H 1.09002 * 109.46967 * 89.97549 * 5 4 3 29 29 H 1.09000 * 109.47502 * 209.97642 * 5 4 3 30 30 H 1.09001 * 109.47512 * 329.97906 * 5 4 3 31 31 H 1.08997 * 109.47549 * 270.15421 * 7 6 4 32 32 H 1.08999 * 109.46993 * 30.15948 * 7 6 4 33 33 H 1.09004 * 109.46976 * 150.15317 * 7 6 4 34 34 H 0.97010 * 119.99946 * 180.02562 * 17 16 14 35 35 H 1.08994 * 115.55538 * 205.92134 * 22 12 11 36 36 H 1.08998 * 117.49811 * 215.00485 * 23 22 12 37 37 H 1.09003 * 117.49993 * 0.02562 * 23 22 12 38 38 H 1.09001 * 117.49700 * 359.97438 * 24 22 12 39 39 H 1.08994 * 117.49854 * 144.97700 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6444 0.0006 5 6 4.7783 1.5297 0.0013 6 6 3.6448 -0.6975 0.0070 7 6 4.8814 -1.5587 0.0161 8 6 2.3376 -1.1437 0.0006 9 6 1.8927 -2.5476 0.0008 10 8 1.7100 -3.1274 -1.0515 11 8 1.6883 -3.1896 1.1679 12 6 1.2509 -4.5720 1.0921 13 1 1.6463 -5.0290 0.1849 14 6 1.7563 -5.3255 2.2953 15 1 1.8262 -4.8301 3.2525 16 6 2.1295 -6.6473 2.1744 17 7 2.4797 -7.3319 3.2412 18 14 2.1375 -7.4655 0.4952 19 1 3.4255 -7.1819 -0.1874 20 1 1.9767 -8.9328 0.6587 21 1 1.0170 -6.9326 -0.3206 22 6 -0.2780 -4.6225 1.0640 23 6 -1.0326 -3.3153 1.3147 24 6 -0.9869 -3.9152 -0.0928 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 5.0670 1.7495 1.0292 29 1 5.6061 1.0402 -0.5118 30 1 4.5304 2.4583 -0.5128 31 1 5.1854 -1.7690 -1.0093 32 1 5.6852 -1.0349 0.5333 33 1 4.6679 -2.4955 0.5311 34 1 2.7426 -8.2618 3.1561 35 1 -0.7251 -5.5420 1.4413 36 1 -1.9761 -3.3750 1.8572 37 1 -0.4398 -2.4194 1.4993 38 1 -0.3641 -3.4136 -0.8335 39 1 -1.9002 -4.3697 -0.4767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:56 Heat of formation + Delta-G solvation = 10.989372 kcal Electronic energy + Delta-G solvation = -22405.156901 eV Core-core repulsion = 19122.589183 eV Total energy + Delta-G solvation = -3282.567718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39039 -39.48977 -36.53537 -34.77112 -34.29002 -32.77564 -32.07106 -29.61940 -28.81350 -27.43736 -25.77559 -23.25476 -22.21404 -21.67494 -20.01545 -19.50154 -18.95136 -17.53932 -16.63213 -16.37796 -15.94954 -15.67738 -15.39538 -14.29219 -13.94835 -13.79410 -13.55244 -13.43981 -13.22608 -12.94857 -12.77216 -12.65123 -12.40435 -12.02313 -11.93946 -11.83867 -11.54814 -11.31571 -10.98885 -10.77394 -10.66070 -10.18909 -9.96192 -9.76168 -9.71889 -9.18450 -9.13669 -8.77848 -8.69900 -8.41264 -6.27288 -4.31116 1.71709 2.32184 2.53608 2.80218 3.21991 3.30002 3.38022 3.76073 4.27264 4.41825 4.51946 4.62879 4.83965 4.94492 5.05039 5.06343 5.18845 5.32504 5.43786 5.61223 5.65474 5.69382 5.78668 5.80014 5.82600 5.85570 5.96463 6.03828 6.28026 6.38374 6.54021 6.60172 6.81714 6.84596 6.88100 7.00416 7.36684 7.52067 7.65682 8.25886 8.67878 8.85500 9.31910 10.83698 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.006203 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.288004 B = 4512.800694 C = 5303.446736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.120 3.880 3 N -0.302 5.302 4 N -0.365 5.365 5 C 0.100 3.900 6 C 0.133 3.867 7 C -0.102 4.102 8 C -0.258 4.258 9 C 0.537 3.463 10 O -0.514 6.514 11 O -0.335 6.335 12 C 0.213 3.787 13 H 0.053 0.947 14 C -0.512 4.512 15 H 0.086 0.914 16 C 0.084 3.916 17 N -0.881 5.881 18 Si 0.864 3.136 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.256 1.256 22 C -0.142 4.142 23 C -0.178 4.178 24 C -0.210 4.210 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 14.377 -6.665 16.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 N -0.123 5.123 4 N -0.145 5.145 5 C -0.041 4.041 6 C 0.003 3.997 7 C -0.160 4.160 8 C -0.271 4.271 9 C 0.379 3.621 10 O -0.405 6.405 11 O -0.250 6.250 12 C 0.160 3.840 13 H 0.070 0.930 14 C -0.549 4.549 15 H 0.104 0.896 16 C -0.121 4.121 17 N -0.518 5.518 18 Si 0.689 3.311 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.180 1.180 22 C -0.161 4.161 23 C -0.215 4.215 24 C -0.247 4.247 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.420 15.350 -6.863 16.987 hybrid contribution 0.074 -1.452 -0.816 1.667 sum 2.494 13.897 -7.679 16.072 Atomic orbital electron populations 1.20327 0.85992 1.03735 1.03722 1.22262 0.96863 0.88625 0.96915 1.77044 0.85855 1.22233 1.27206 1.48034 1.05851 1.03921 1.56743 1.21894 0.84140 0.94400 1.03666 1.21307 0.96095 0.84546 0.97763 1.20623 0.92085 0.99331 1.03948 1.19231 0.92308 0.92303 1.23253 1.20125 0.73391 0.85410 0.83143 1.90746 1.48485 1.67720 1.33503 1.86845 1.76000 1.30346 1.31849 1.20485 0.89055 0.75356 0.99099 0.92966 1.20700 1.44340 0.95124 0.94748 0.89577 1.24879 0.93597 0.96797 0.96783 1.69855 1.43418 1.09841 1.28638 0.87022 0.80180 0.78959 0.84895 1.19579 1.20748 1.18021 1.23228 0.95973 0.96416 1.00492 1.22833 1.01592 0.98478 0.98633 1.23272 1.02892 1.06252 0.92269 0.89670 0.90438 0.90013 0.90400 0.89318 0.89055 0.89516 0.90341 0.88487 0.91992 0.87116 0.89760 0.88914 0.88250 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.19 36.00 0.37 -0.71 16 2 C 0.12 1.98 7.27 -82.01 -0.60 1.39 16 3 N -0.30 -4.76 12.50 33.90 0.42 -4.34 16 4 N -0.37 -5.00 3.98 -63.33 -0.25 -5.25 16 5 C 0.10 0.80 11.05 59.84 0.66 1.46 16 6 C 0.13 2.05 7.01 -81.59 -0.57 1.47 16 7 C -0.10 -1.25 9.70 36.00 0.35 -0.90 16 8 C -0.26 -4.73 6.00 -105.08 -0.63 -5.36 16 9 C 0.54 11.42 6.07 34.40 0.21 11.63 16 10 O -0.51 -11.87 14.19 -19.29 -0.27 -12.14 16 11 O -0.34 -7.85 8.40 -40.65 -0.34 -8.19 16 12 C 0.21 5.32 2.07 -27.88 -0.06 5.26 16 13 H 0.05 1.37 4.32 -51.93 -0.22 1.15 16 14 C -0.51 -14.35 9.22 -34.44 -0.32 -14.66 16 15 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 16 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 17 N -0.88 -25.84 13.96 55.43 0.77 -25.07 16 18 Si 0.86 21.14 26.98 -169.99 -4.59 16.55 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.26 -6.17 6.83 56.52 0.39 -5.79 16 22 C -0.14 -3.17 5.69 -90.62 -0.52 -3.69 16 23 C -0.18 -3.37 9.80 -26.69 -0.26 -3.63 16 24 C -0.21 -4.06 9.85 -26.69 -0.26 -4.33 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.50 7.64 -51.93 -0.40 0.10 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.70 7.71 -51.93 -0.40 0.30 16 33 H 0.10 1.40 7.96 -51.93 -0.41 0.99 16 34 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.11 2.49 8.11 -51.93 -0.42 2.07 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 1.76 6.81 -51.93 -0.35 1.41 16 38 H 0.10 2.04 5.37 -51.93 -0.28 1.76 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -33.44 329.72 -6.45 -39.89 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.44 Total: 3.39 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.73 Total: -9.80 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.95 Total: -34.66 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.62 Total: -20.33 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.59 Total: 16.55 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.44 -6.45 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.883 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds