Wall clock time and date at job start Tue Mar 31 2020 00:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30428 * 125.99432 * 2 1 4 4 N 1.39933 * 108.92010 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.74488 * 180.02562 * 4 3 2 6 6 C 1.34233 * 108.50990 * 359.72867 * 4 3 2 7 7 C 1.50696 * 126.29327 * 180.29627 * 6 4 3 8 8 C 1.38127 * 107.40877 * 0.42825 * 6 4 3 9 9 C 1.47277 * 126.42795 * 179.83477 * 8 6 4 10 10 O 1.21526 * 120.00376 * 269.71605 * 9 8 6 11 11 O 1.34760 * 120.00101 * 89.71302 * 9 8 6 12 12 C 1.45193 * 117.00097 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47372 * 30.00288 * 12 11 9 14 14 C 1.50697 * 109.47312 * 149.99992 * 12 11 9 15 15 H 1.08007 * 119.99868 * 34.96019 * 14 12 11 16 16 C 1.37878 * 120.00639 * 214.96213 * 14 12 11 17 17 N 1.31509 * 120.00258 * 184.84273 * 16 14 12 18 18 Si 1.86800 * 119.99437 * 4.84046 * 16 14 12 19 19 H 1.48500 * 109.47063 * 84.75562 * 18 16 14 20 20 H 1.48509 * 109.47014 * 204.74679 * 18 16 14 21 21 H 1.48492 * 109.47455 * 324.74774 * 18 16 14 22 22 C 1.52999 * 109.47498 * 270.00052 * 12 11 9 23 23 C 1.53000 * 117.49461 * 351.59356 * 22 12 11 24 24 C 1.53003 * 117.49611 * 60.24904 * 22 12 11 25 25 H 1.08999 * 109.47477 * 269.99943 * 1 2 3 26 26 H 1.09000 * 109.47352 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.47077 * 150.00029 * 1 2 3 28 28 H 1.09002 * 109.46967 * 89.97549 * 5 4 3 29 29 H 1.09000 * 109.47502 * 209.97642 * 5 4 3 30 30 H 1.09001 * 109.47512 * 329.97906 * 5 4 3 31 31 H 1.08997 * 109.47549 * 270.15421 * 7 6 4 32 32 H 1.08999 * 109.46993 * 30.15948 * 7 6 4 33 33 H 1.09004 * 109.46976 * 150.15317 * 7 6 4 34 34 H 0.97010 * 119.99946 * 180.02562 * 17 16 14 35 35 H 1.08994 * 115.55538 * 205.92134 * 22 12 11 36 36 H 1.08998 * 117.49811 * 215.00485 * 23 22 12 37 37 H 1.09003 * 117.49993 * 0.02562 * 23 22 12 38 38 H 1.09001 * 117.49700 * 359.97438 * 24 22 12 39 39 H 1.08994 * 117.49854 * 144.97700 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6444 0.0006 5 6 4.7783 1.5297 0.0013 6 6 3.6448 -0.6975 0.0070 7 6 4.8814 -1.5587 0.0161 8 6 2.3376 -1.1437 0.0006 9 6 1.8927 -2.5476 0.0008 10 8 1.7100 -3.1274 -1.0515 11 8 1.6883 -3.1896 1.1679 12 6 1.2509 -4.5720 1.0921 13 1 1.6463 -5.0290 0.1849 14 6 1.7563 -5.3255 2.2953 15 1 1.8262 -4.8301 3.2525 16 6 2.1295 -6.6473 2.1744 17 7 2.4797 -7.3319 3.2412 18 14 2.1375 -7.4655 0.4952 19 1 3.4255 -7.1819 -0.1874 20 1 1.9767 -8.9328 0.6587 21 1 1.0170 -6.9326 -0.3206 22 6 -0.2780 -4.6225 1.0640 23 6 -1.0326 -3.3153 1.3147 24 6 -0.9869 -3.9152 -0.0928 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 5.0670 1.7495 1.0292 29 1 5.6061 1.0402 -0.5118 30 1 4.5304 2.4583 -0.5128 31 1 5.1854 -1.7690 -1.0093 32 1 5.6852 -1.0349 0.5333 33 1 4.6679 -2.4955 0.5311 34 1 2.7426 -8.2618 3.1561 35 1 -0.7251 -5.5420 1.4413 36 1 -1.9761 -3.3750 1.8572 37 1 -0.4398 -2.4194 1.4993 38 1 -0.3641 -3.4136 -0.8335 39 1 -1.9002 -4.3697 -0.4767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:56 Heat of formation + Delta-G solvation = -9.596338 kcal Electronic energy + Delta-G solvation = -22406.049565 eV Core-core repulsion = 19122.589183 eV Total energy + Delta-G solvation = -3283.460381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.59423 -41.18892 -38.23427 -36.50031 -35.34970 -34.90645 -33.20210 -30.81399 -30.50269 -28.68672 -26.77623 -25.12717 -23.73116 -23.21361 -21.54207 -20.63959 -20.58826 -19.34165 -18.45584 -17.92637 -17.56862 -16.90977 -16.72843 -15.94284 -15.61357 -15.04195 -14.79158 -14.73588 -14.47039 -14.22968 -14.11956 -13.85568 -13.51835 -13.46846 -13.28496 -13.18957 -12.94669 -12.92485 -12.86535 -12.29351 -12.05582 -12.01017 -11.89560 -11.49554 -11.42214 -11.03102 -10.75919 -10.57691 -10.21955 -9.66777 -8.44903 -6.53804 0.55320 1.15946 1.19768 1.28182 1.30150 1.38234 1.42622 2.16982 2.22051 2.86884 3.07053 3.40132 3.47426 3.83672 3.98673 4.06773 4.12425 4.15486 4.21864 4.31436 4.39572 4.51241 4.59762 4.63963 4.67077 4.71611 4.78412 4.82150 4.87074 4.90792 4.96816 5.09088 5.21867 5.30852 5.40335 5.47432 5.63992 5.86805 6.17022 6.48266 6.54008 6.92954 7.14194 8.70281 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.006203 C = 0.005278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.288004 B = 4512.800694 C = 5303.446736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.112 3.888 3 N -0.313 5.313 4 N -0.355 5.355 5 C 0.085 3.915 6 C 0.140 3.860 7 C -0.101 4.101 8 C -0.307 4.307 9 C 0.546 3.454 10 O -0.537 6.537 11 O -0.348 6.348 12 C 0.220 3.780 13 H 0.038 0.962 14 C -0.522 4.522 15 H 0.046 0.954 16 C 0.040 3.960 17 N -0.922 5.922 18 Si 0.922 3.078 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.251 1.251 22 C -0.179 4.179 23 C -0.159 4.159 24 C -0.190 4.190 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.068 0.932 34 H 0.276 0.724 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 15.971 -8.163 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 N -0.135 5.135 4 N -0.135 5.135 5 C -0.054 4.054 6 C 0.007 3.993 7 C -0.159 4.159 8 C -0.320 4.320 9 C 0.390 3.610 10 O -0.428 6.428 11 O -0.264 6.264 12 C 0.166 3.834 13 H 0.056 0.944 14 C -0.560 4.560 15 H 0.064 0.936 16 C -0.161 4.161 17 N -0.560 5.560 18 Si 0.745 3.255 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.175 1.175 22 C -0.198 4.198 23 C -0.196 4.196 24 C -0.226 4.226 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.114 0.886 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.654 16.989 -8.361 19.120 hybrid contribution 0.105 -1.792 -0.293 1.819 sum 2.759 15.197 -8.654 17.704 Atomic orbital electron populations 1.20400 0.84586 1.04309 1.04407 1.22614 0.98063 0.88048 0.96719 1.76993 0.86928 1.22058 1.27568 1.48489 1.06423 1.03914 1.54634 1.22439 0.82957 0.94439 1.05541 1.21680 0.96011 0.85634 0.95984 1.20741 0.91971 0.97983 1.05245 1.19289 0.94373 0.90867 1.27494 1.20507 0.72256 0.86270 0.81931 1.90711 1.49494 1.68637 1.33932 1.86803 1.76537 1.29611 1.33449 1.20205 0.90783 0.75788 0.96628 0.94400 1.20786 1.44901 0.95805 0.94481 0.93600 1.25565 0.93095 0.97199 1.00240 1.69957 1.44759 1.10522 1.30727 0.86099 0.80379 0.78575 0.80469 1.19122 1.19209 1.17498 1.23029 0.94439 0.98045 1.04314 1.22922 1.01832 0.96268 0.98532 1.23264 1.02911 1.04732 0.91723 0.88859 0.88202 0.91020 0.88631 0.86327 0.87710 0.87722 0.86435 0.91310 0.91473 0.87768 0.86920 0.89311 0.89454 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 10.19 71.24 0.73 -1.33 16 2 C 0.11 3.61 7.27 43.53 0.32 3.92 16 3 N -0.31 -9.38 12.50 -46.65 -0.58 -9.96 16 4 N -0.36 -8.89 3.98 -354.27 -1.41 -10.30 16 5 C 0.08 1.05 11.05 127.77 1.41 2.46 16 6 C 0.14 4.10 7.01 42.16 0.30 4.40 16 7 C -0.10 -2.31 9.70 71.23 0.69 -1.62 16 8 C -0.31 -11.19 6.00 -20.16 -0.12 -11.32 16 9 C 0.55 23.57 6.07 70.20 0.43 23.99 16 10 O -0.54 -25.04 14.19 19.75 0.28 -24.76 16 11 O -0.35 -16.79 8.40 -56.71 -0.48 -17.27 16 12 C 0.22 11.21 2.07 29.85 0.06 11.28 16 13 H 0.04 2.03 4.32 -2.38 -0.01 2.02 16 14 C -0.52 -30.51 9.22 25.60 0.24 -30.28 16 15 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 16 C 0.04 2.31 5.47 84.66 0.46 2.77 16 17 N -0.92 -55.59 13.96 21.45 0.30 -55.29 16 18 Si 0.92 44.15 26.98 68.60 1.85 46.00 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.25 -11.75 6.83 99.48 0.68 -11.07 16 22 C -0.18 -8.00 5.69 -10.79 -0.06 -8.06 16 23 C -0.16 -5.81 9.80 30.62 0.30 -5.51 16 24 C -0.19 -7.06 9.85 30.62 0.30 -6.76 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.12 0.79 7.64 -2.39 -0.02 0.77 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 1.70 7.71 -2.39 -0.02 1.68 16 33 H 0.07 1.99 7.96 -2.38 -0.02 1.97 16 34 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.10 4.72 8.11 -2.39 -0.02 4.70 16 36 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.09 3.32 6.81 -2.39 -0.02 3.30 16 38 H 0.09 3.51 5.37 -2.39 -0.01 3.50 16 39 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -75.25 329.72 6.04 -69.22 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.03 Total: 18.41 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 5.05 Total: -16.04 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.69 Total: -75.55 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.20 Total: -42.02 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.85 Total: 46.00 kcal Total: -75.25 6.04 -69.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.620 kcal (2) G-P(sol) polarization free energy of solvation -75.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds