Wall clock time and date at job start Tue Mar 31 2020 00:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.20833 * 119.99972 * 359.97438 * 9 8 7 11 11 O 1.34236 * 120.00404 * 180.02562 * 9 8 7 12 12 C 1.45193 * 117.00095 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47457 * 330.00522 * 12 11 9 14 14 C 1.50701 * 109.47426 * 209.99763 * 12 11 9 15 15 H 1.07996 * 119.99413 * 0.02562 * 14 12 11 16 16 C 1.37876 * 120.00343 * 180.02562 * 14 12 11 17 17 N 1.31512 * 119.99938 * 179.97438 * 16 14 12 18 18 Si 1.86805 * 119.99783 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.46927 * 89.99728 * 18 16 14 20 20 H 1.48501 * 109.46654 * 209.99530 * 18 16 14 21 21 H 1.48494 * 109.46930 * 329.99747 * 18 16 14 22 22 C 1.53003 * 109.46832 * 90.00158 * 12 11 9 23 23 C 1.53001 * 117.50055 * 8.74274 * 22 12 11 24 24 C 1.53000 * 117.49971 * 300.08431 * 22 12 11 25 25 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 26 26 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 27 27 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 28 28 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 29 29 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 30 30 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 31 31 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 32 32 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 33 33 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 34 34 H 0.97003 * 119.99951 * 180.02562 * 17 16 14 35 35 H 1.09004 * 115.54913 * 154.41777 * 22 12 11 36 36 H 1.09002 * 117.49696 * 0.02562 * 23 22 12 37 37 H 1.08999 * 117.50077 * 145.01969 * 23 22 12 38 38 H 1.09000 * 117.50431 * 214.97921 * 24 22 12 39 39 H 1.09006 * 117.49934 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7526 -2.2330 -2.3308 11 8 1.1559 -4.2525 -1.6605 12 6 0.9119 -4.6058 -3.0475 13 1 0.6082 -3.7172 -3.6008 14 6 -0.1823 -5.6397 -3.1177 15 1 -0.6480 -5.9953 -2.2105 16 6 -0.5887 -6.1315 -4.3399 17 7 -1.5433 -7.0341 -4.4010 18 14 0.2175 -5.5169 -5.9089 19 1 1.3870 -6.3728 -6.2325 20 1 -0.7618 -5.5746 -7.0239 21 1 0.6678 -4.1149 -5.7176 22 6 2.1922 -5.1759 -3.6613 23 6 3.3627 -5.4593 -2.7176 24 6 3.4277 -4.2736 -3.6835 25 1 -0.3633 0.0004 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 5.0836 1.7155 1.0262 29 1 5.6089 0.9983 -0.5158 30 1 4.5560 2.4334 -0.5147 31 1 4.4892 -1.3485 -0.0129 32 1 2.6329 -3.2001 0.4332 33 1 0.9471 -2.6503 0.5891 34 1 -1.8290 -7.3805 -5.2609 35 1 2.0488 -5.8536 -4.5030 36 1 3.2205 -5.2400 -1.6594 37 1 3.9896 -6.3232 -2.9385 38 1 4.0973 -4.3579 -4.5394 39 1 3.3282 -3.2736 -3.2611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:59 Heat of formation + Delta-G solvation = -1.574628 kcal Electronic energy + Delta-G solvation = -21993.016552 eV Core-core repulsion = 18709.904019 eV Total energy + Delta-G solvation = -3283.112534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.31844 -41.34524 -38.41336 -36.54007 -35.12010 -34.87863 -33.08181 -30.84562 -30.49562 -28.77334 -25.92168 -24.81118 -23.32528 -22.86105 -21.70427 -21.08292 -20.35616 -19.01564 -18.36676 -17.78597 -17.57830 -17.21945 -16.46826 -16.02933 -15.61715 -15.28112 -14.93556 -14.76612 -14.39827 -14.31660 -14.04100 -13.63436 -13.51324 -13.35580 -13.19604 -12.98566 -12.92977 -12.72590 -12.66758 -12.37261 -12.10677 -11.87874 -11.47419 -11.41341 -11.35750 -10.98721 -10.73720 -10.60676 -10.15493 -9.33671 -8.42332 -6.49085 0.91930 1.21720 1.30410 1.42085 1.45163 1.53407 1.69822 2.21350 2.33626 2.86599 3.02010 3.55204 3.89783 3.91119 3.96824 4.04545 4.15311 4.17886 4.25933 4.40881 4.43506 4.45720 4.61927 4.68825 4.69473 4.75867 4.79829 4.87330 4.98893 5.04227 5.09243 5.12552 5.15316 5.27474 5.41890 5.67897 5.79305 6.15968 6.22929 6.55148 6.74622 7.04535 7.18436 8.73362 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.004841 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.933894 B = 5782.485880 C = 6180.624331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.337 5.337 4 N -0.380 5.380 5 C 0.095 3.905 6 C 0.079 3.921 7 C -0.247 4.247 8 C -0.024 4.024 9 C 0.448 3.552 10 O -0.538 6.538 11 O -0.351 6.351 12 C 0.234 3.766 13 H 0.025 0.975 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.034 3.966 17 N -0.930 5.930 18 Si 0.934 3.066 19 H -0.254 1.254 20 H -0.284 1.284 21 H -0.258 1.258 22 C -0.203 4.203 23 C -0.147 4.147 24 C -0.188 4.188 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.209 0.791 32 H 0.139 0.861 33 H 0.124 0.876 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.942 12.704 10.174 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 N -0.161 5.161 4 N -0.161 5.161 5 C -0.045 4.045 6 C -0.068 4.068 7 C -0.258 4.258 8 C -0.062 4.062 9 C 0.292 3.708 10 O -0.428 6.428 11 O -0.267 6.267 12 C 0.180 3.820 13 H 0.042 0.958 14 C -0.567 4.567 15 H 0.068 0.932 16 C -0.166 4.166 17 N -0.569 5.569 18 Si 0.759 3.241 19 H -0.179 1.179 20 H -0.211 1.211 21 H -0.183 1.183 22 C -0.221 4.221 23 C -0.184 4.184 24 C -0.225 4.225 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.226 0.774 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.063 14.187 9.773 22.884 hybrid contribution -0.297 -0.861 -1.229 1.529 sum 14.766 13.327 8.544 21.648 Atomic orbital electron populations 1.20257 0.86215 1.04353 1.02730 1.22515 0.97669 0.90623 0.98206 1.77197 0.87861 1.23455 1.27578 1.48673 1.05683 1.05445 1.56333 1.22191 0.82734 0.94757 1.04805 1.22824 0.99621 0.85228 0.99171 1.19496 0.92893 0.94445 1.18998 1.19608 1.05880 0.92298 0.88411 1.24633 0.72580 0.79612 0.93947 1.90564 1.49490 1.54530 1.48252 1.86508 1.76095 1.31610 1.32515 1.19902 0.91817 0.94022 0.76292 0.95754 1.20932 1.18183 1.23160 0.94424 0.93216 1.25464 0.95115 0.94329 1.01686 1.69959 1.29950 1.29882 1.27079 0.86071 0.78622 0.80329 0.79093 1.17919 1.21082 1.18271 1.23160 0.91179 1.04519 1.03290 1.22907 0.99099 0.99493 0.96921 1.23255 1.00128 0.96122 1.02952 0.91806 0.89074 0.89781 0.88929 0.86908 0.89608 0.77404 0.84307 0.85826 0.91695 0.88817 0.88060 0.87202 0.87802 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.26 71.24 0.73 -1.22 16 2 C 0.08 2.19 7.22 43.10 0.31 2.50 16 3 N -0.34 -9.99 12.57 -47.38 -0.60 -10.59 16 4 N -0.38 -8.67 4.01 -369.56 -1.48 -10.15 16 5 C 0.09 1.15 11.47 127.77 1.47 2.62 16 6 C 0.08 1.71 11.40 83.54 0.95 2.66 16 7 C -0.25 -6.50 4.59 -20.14 -0.09 -6.59 16 8 C -0.02 -0.60 6.06 29.10 0.18 -0.42 16 9 C 0.45 16.51 6.90 71.23 0.49 17.00 16 10 O -0.54 -22.99 13.09 21.94 0.29 -22.71 16 11 O -0.35 -15.34 8.38 -51.47 -0.43 -15.77 16 12 C 0.23 11.77 2.00 29.85 0.06 11.83 16 13 H 0.02 1.35 6.22 -2.39 -0.01 1.33 16 14 C -0.53 -31.06 9.48 25.60 0.24 -30.82 16 15 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 16 C 0.03 1.97 5.44 84.65 0.46 2.43 16 17 N -0.93 -57.18 13.96 21.45 0.30 -56.88 16 18 Si 0.93 45.14 24.48 68.60 1.68 46.82 16 19 H -0.25 -11.37 6.72 99.48 0.67 -10.70 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.26 -12.48 6.53 99.48 0.65 -11.83 16 22 C -0.20 -8.96 4.45 -10.79 -0.05 -9.01 16 23 C -0.15 -5.12 9.80 30.62 0.30 -4.82 16 24 C -0.19 -6.79 9.85 30.62 0.30 -6.49 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 1.99 7.37 -2.39 -0.02 1.97 16 27 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.21 2.73 8.06 -2.91 -0.02 2.70 16 32 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.12 2.73 7.41 -2.39 -0.02 2.71 16 34 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.09 4.35 4.39 -2.38 -0.01 4.34 16 36 H 0.10 3.34 6.91 -2.39 -0.02 3.33 16 37 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.61 5.37 -2.38 -0.01 3.59 16 Total: -1.00 -77.75 323.00 6.07 -71.68 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.96 Total: 17.91 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 5.35 Total: -20.32 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -1.78 Total: -77.62 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.14 Total: -38.48 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.68 Total: 46.82 kcal Total: -77.75 6.07 -71.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.108 kcal (2) G-P(sol) polarization free energy of solvation -77.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds