Wall clock time and date at job start Tue Mar 31 2020 00:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35446 * 125.56792 * 2 1 4 4 C 1.39841 * 107.86670 * 179.76026 * 3 2 1 5 5 C 1.50701 * 126.45660 * 180.26278 * 4 3 2 6 6 C 1.37872 * 107.08333 * 0.41992 * 4 3 2 7 7 C 1.46668 * 126.23199 * 179.84663 * 6 4 3 8 8 O 1.21701 * 120.00165 * 359.71245 * 7 6 4 9 9 N 1.34784 * 119.99923 * 179.71736 * 7 6 4 10 10 C 1.47014 * 125.64965 * 359.97080 * 9 7 6 11 11 C 1.54327 * 107.27187 * 178.98958 * 10 9 7 12 12 C 1.55149 * 102.94214 * 337.80814 * 11 10 9 13 13 O 1.42903 * 111.00594 * 277.43081 * 12 11 10 14 14 C 1.50694 * 111.00456 * 153.61700 * 12 11 10 15 15 H 1.07991 * 120.00193 * 3.17397 * 14 12 11 16 16 C 1.37884 * 119.99946 * 183.18304 * 14 12 11 17 17 N 1.31508 * 119.99961 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00010 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46843 * 59.99638 * 18 16 14 20 20 H 1.48500 * 109.47210 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47013 * 300.00069 * 18 16 14 22 22 C 1.47419 * 125.64596 * 180.02562 * 9 7 6 23 23 N 1.35537 * 125.56292 * 180.02562 * 2 1 3 24 24 H 0.97002 * 125.67245 * 359.95650 * 23 2 1 25 25 H 1.09003 * 109.47014 * 269.97710 * 1 2 3 26 26 H 1.09000 * 109.47385 * 29.97297 * 1 2 3 27 27 H 1.09000 * 109.47305 * 149.97420 * 1 2 3 28 28 H 1.08002 * 126.06491 * 0.02965 * 3 2 1 29 29 H 1.08998 * 109.47272 * 270.18497 * 5 4 3 30 30 H 1.08997 * 109.46751 * 30.18635 * 5 4 3 31 31 H 1.09001 * 109.46845 * 150.18210 * 5 4 3 32 32 H 1.08999 * 109.88292 * 59.56755 * 10 9 7 33 33 H 1.09001 * 109.88362 * 298.40947 * 10 9 7 34 34 H 1.09002 * 110.71297 * 219.44414 * 11 10 9 35 35 H 1.09000 * 110.86709 * 96.24207 * 11 10 9 36 36 H 0.96700 * 114.00311 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99988 * 180.02562 * 17 16 14 38 38 H 1.09009 * 110.36844 * 85.24321 * 22 9 7 39 39 H 1.09002 * 110.37005 * 322.91821 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6766 0.0056 5 6 4.8486 1.5590 0.0131 6 6 3.6122 -0.7021 -0.0008 7 6 4.7859 -1.5816 -0.0013 8 8 5.9049 -1.1032 -0.0011 9 7 4.6251 -2.9199 -0.0022 10 6 3.3368 -3.6281 -0.0020 11 6 3.6451 -5.1400 -0.0292 12 6 5.0812 -5.1914 -0.6142 13 8 5.0561 -5.1163 -2.0410 14 6 5.8080 -6.4286 -0.1540 15 1 5.2978 -7.1591 0.4562 16 6 7.1245 -6.6281 -0.5120 17 7 7.7458 -5.7388 -1.2554 18 14 8.0257 -8.1615 0.0590 19 1 7.3272 -9.3667 -0.4559 20 1 9.4180 -8.1384 -0.4570 21 1 8.0479 -8.1987 1.5434 22 6 5.7121 -3.9157 -0.0023 23 7 2.2952 -1.1026 -0.0005 24 1 1.9832 -2.0210 -0.0003 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.9545 2.1268 0.0005 29 1 5.1461 1.7765 -1.0127 30 1 4.6204 2.4908 0.5306 31 1 5.6628 1.0480 0.5271 32 1 2.7614 -3.3511 -0.8853 33 1 2.7775 -3.3800 0.9000 34 1 2.9449 -5.6646 -0.6792 35 1 3.6233 -5.5589 0.9769 36 1 5.9310 -5.1451 -2.4519 37 1 8.6718 -5.8793 -1.5075 38 1 6.0486 -4.1101 1.0162 39 1 6.5428 -3.5706 -0.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:33 Heat of formation + Delta-G solvation = -42.886924 kcal Electronic energy + Delta-G solvation = -22215.380243 eV Core-core repulsion = 18930.476274 eV Total energy + Delta-G solvation = -3284.903969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31272 -38.98448 -37.13895 -34.47826 -32.55376 -32.24203 -31.59284 -30.17473 -28.23459 -27.40811 -26.47160 -24.80233 -22.74876 -20.63779 -20.11152 -19.65945 -18.78216 -17.32943 -16.97755 -15.52936 -15.38976 -15.26905 -14.68802 -14.48689 -14.21174 -13.39475 -13.33384 -13.24997 -12.95426 -12.82896 -12.77530 -12.70897 -12.17602 -12.06394 -11.87533 -11.69106 -11.51013 -11.30042 -11.07197 -10.89720 -10.74146 -10.56143 -10.26129 -9.52442 -9.37266 -8.74337 -8.62551 -8.46483 -8.03409 -7.68420 -6.33466 -4.44247 1.73547 2.81597 3.18368 3.22338 3.25176 3.26332 3.62346 3.80492 4.22204 4.81758 4.90345 4.99525 5.08941 5.16549 5.33846 5.37183 5.38603 5.51776 5.59756 5.72179 5.82925 5.87064 6.00617 6.08259 6.13543 6.32766 6.36143 6.58509 6.60936 6.76411 6.84801 7.00470 7.14347 7.20594 7.29563 7.54274 7.68523 7.92453 8.13582 8.58803 8.70541 9.25056 9.35182 10.73590 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.004689 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.760345 B = 5970.551751 C = 6598.412993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.036 3.964 3 C -0.209 4.209 4 C -0.084 4.084 5 C -0.087 4.087 6 C -0.042 4.042 7 C 0.593 3.407 8 O -0.535 6.535 9 N -0.610 5.610 10 C 0.095 3.905 11 C -0.116 4.116 12 C 0.250 3.750 13 O -0.585 6.585 14 C -0.542 4.542 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.892 5.892 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.096 3.904 23 N -0.540 5.540 24 H 0.416 0.584 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.386 0.614 37 H 0.272 0.728 38 H 0.062 0.938 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.340 8.709 2.736 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.233 4.233 4 C -0.092 4.092 5 C -0.144 4.144 6 C -0.155 4.155 7 C 0.382 3.618 8 O -0.413 6.413 9 N -0.343 5.343 10 C -0.029 4.029 11 C -0.154 4.154 12 C 0.210 3.790 13 O -0.394 6.394 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.531 5.531 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.025 4.025 23 N -0.141 5.141 24 H 0.259 0.741 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.194 8.911 2.751 15.351 hybrid contribution 0.862 -1.268 0.200 1.546 sum -11.332 7.643 2.951 13.983 Atomic orbital electron populations 1.20366 0.87967 1.03360 1.02721 1.20488 0.93540 0.86599 1.07503 1.20496 0.91860 0.97631 1.13358 1.19878 0.95370 0.91040 1.02932 1.20300 0.94846 0.97210 1.02036 1.20396 0.83035 0.94175 1.17869 1.16717 0.87282 0.80328 0.77465 1.90778 1.24248 1.74335 1.51987 1.48667 1.09245 1.04805 1.71542 1.22125 0.86604 0.95416 0.98747 1.22624 0.99513 0.91659 1.01602 1.19582 0.89044 0.90958 0.79461 1.86067 1.35987 1.96723 1.20634 1.21421 0.96754 1.05857 1.34007 0.91479 1.25087 0.97239 0.96829 0.94011 1.69637 1.12702 1.34704 1.36053 0.86435 0.78555 0.82615 0.79162 1.19970 1.20997 1.19969 1.23298 0.89876 0.88058 1.01293 1.42615 1.05623 1.08880 1.56973 0.74096 0.90877 0.89985 0.91682 0.84383 0.91775 0.92412 0.90127 0.92413 0.92945 0.90480 0.90088 0.76319 0.91748 0.91993 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.41 36.00 0.37 -0.32 16 2 C 0.04 0.45 7.13 -81.95 -0.58 -0.14 16 3 C -0.21 -2.82 10.66 -39.98 -0.43 -3.25 16 4 C -0.08 -1.37 6.21 -104.16 -0.65 -2.02 16 5 C -0.09 -1.31 9.83 36.01 0.35 -0.96 16 6 C -0.04 -0.75 6.89 -81.99 -0.56 -1.31 16 7 C 0.59 12.64 7.82 -12.85 -0.10 12.54 16 8 O -0.54 -12.88 15.06 5.19 0.08 -12.81 16 9 N -0.61 -12.80 3.33 -172.06 -0.57 -13.37 16 10 C 0.09 1.63 5.11 -3.07 -0.02 1.61 16 11 C -0.12 -2.21 6.13 -24.90 -0.15 -2.37 16 12 C 0.25 5.95 0.89 -89.63 -0.08 5.87 16 13 O -0.58 -14.79 13.19 -35.23 -0.46 -15.26 16 14 C -0.54 -13.82 8.26 -34.44 -0.28 -14.10 16 15 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 16 C 0.07 1.85 5.27 -17.82 -0.09 1.75 16 17 N -0.89 -23.57 10.68 55.43 0.59 -22.97 16 18 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.10 2.30 5.51 -2.53 -0.01 2.29 16 23 N -0.54 -7.75 5.61 -5.70 -0.03 -7.78 16 24 H 0.42 5.27 4.92 -40.82 -0.20 5.07 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.39 6.49 -51.93 -0.34 1.05 16 32 H 0.06 0.93 7.09 -51.93 -0.37 0.56 16 33 H 0.05 0.75 7.23 -51.93 -0.38 0.37 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 36 H 0.39 10.12 7.18 45.56 0.33 10.44 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.06 1.52 8.03 -51.92 -0.42 1.10 16 39 H 0.09 2.36 7.48 -51.93 -0.39 1.98 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -29.87 318.27 -7.54 -37.41 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -4.68 Total: 15.37 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.23 Total: -0.40 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: -0.01 Total: -44.12 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.39 Total: -28.06 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.87 -7.54 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.479 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds