Wall clock time and date at job start Tue Mar 31 2020 00:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35446 * 125.56792 * 2 1 4 4 C 1.39841 * 107.86670 * 179.76026 * 3 2 1 5 5 C 1.50701 * 126.45660 * 180.26278 * 4 3 2 6 6 C 1.37872 * 107.08333 * 0.41992 * 4 3 2 7 7 C 1.46668 * 126.23199 * 179.84663 * 6 4 3 8 8 O 1.21701 * 120.00165 * 359.71245 * 7 6 4 9 9 N 1.34784 * 119.99923 * 179.71736 * 7 6 4 10 10 C 1.47014 * 125.64965 * 359.97080 * 9 7 6 11 11 C 1.54327 * 107.27187 * 178.98958 * 10 9 7 12 12 C 1.55149 * 102.94214 * 337.80814 * 11 10 9 13 13 O 1.42903 * 111.00594 * 277.43081 * 12 11 10 14 14 C 1.50694 * 111.00456 * 153.61700 * 12 11 10 15 15 H 1.07991 * 120.00193 * 3.17397 * 14 12 11 16 16 C 1.37884 * 119.99946 * 183.18304 * 14 12 11 17 17 N 1.31508 * 119.99961 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00010 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46843 * 59.99638 * 18 16 14 20 20 H 1.48500 * 109.47210 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47013 * 300.00069 * 18 16 14 22 22 C 1.47419 * 125.64596 * 180.02562 * 9 7 6 23 23 N 1.35537 * 125.56292 * 180.02562 * 2 1 3 24 24 H 0.97002 * 125.67245 * 359.95650 * 23 2 1 25 25 H 1.09003 * 109.47014 * 269.97710 * 1 2 3 26 26 H 1.09000 * 109.47385 * 29.97297 * 1 2 3 27 27 H 1.09000 * 109.47305 * 149.97420 * 1 2 3 28 28 H 1.08002 * 126.06491 * 0.02965 * 3 2 1 29 29 H 1.08998 * 109.47272 * 270.18497 * 5 4 3 30 30 H 1.08997 * 109.46751 * 30.18635 * 5 4 3 31 31 H 1.09001 * 109.46845 * 150.18210 * 5 4 3 32 32 H 1.08999 * 109.88292 * 59.56755 * 10 9 7 33 33 H 1.09001 * 109.88362 * 298.40947 * 10 9 7 34 34 H 1.09002 * 110.71297 * 219.44414 * 11 10 9 35 35 H 1.09000 * 110.86709 * 96.24207 * 11 10 9 36 36 H 0.96700 * 114.00311 * 180.02562 * 13 12 11 37 37 H 0.97001 * 119.99988 * 180.02562 * 17 16 14 38 38 H 1.09009 * 110.36844 * 85.24321 * 22 9 7 39 39 H 1.09002 * 110.37005 * 322.91821 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6766 0.0056 5 6 4.8486 1.5590 0.0131 6 6 3.6122 -0.7021 -0.0008 7 6 4.7859 -1.5816 -0.0013 8 8 5.9049 -1.1032 -0.0011 9 7 4.6251 -2.9199 -0.0022 10 6 3.3368 -3.6281 -0.0020 11 6 3.6451 -5.1400 -0.0292 12 6 5.0812 -5.1914 -0.6142 13 8 5.0561 -5.1163 -2.0410 14 6 5.8080 -6.4286 -0.1540 15 1 5.2978 -7.1591 0.4562 16 6 7.1245 -6.6281 -0.5120 17 7 7.7458 -5.7388 -1.2554 18 14 8.0257 -8.1615 0.0590 19 1 7.3272 -9.3667 -0.4559 20 1 9.4180 -8.1384 -0.4570 21 1 8.0479 -8.1987 1.5434 22 6 5.7121 -3.9157 -0.0023 23 7 2.2952 -1.1026 -0.0005 24 1 1.9832 -2.0210 -0.0003 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.9545 2.1268 0.0005 29 1 5.1461 1.7765 -1.0127 30 1 4.6204 2.4908 0.5306 31 1 5.6628 1.0480 0.5271 32 1 2.7614 -3.3511 -0.8853 33 1 2.7775 -3.3800 0.9000 34 1 2.9449 -5.6646 -0.6792 35 1 3.6233 -5.5589 0.9769 36 1 5.9310 -5.1451 -2.4519 37 1 8.6718 -5.8793 -1.5075 38 1 6.0486 -4.1101 1.0162 39 1 6.5428 -3.5706 -0.6178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349456041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:32 Heat of formation + Delta-G solvation = -63.993007 kcal Electronic energy + Delta-G solvation = -22216.295471 eV Core-core repulsion = 18930.476274 eV Total energy + Delta-G solvation = -3285.819198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.50504 -40.58189 -38.86528 -36.26464 -34.23282 -33.70549 -32.71306 -31.72637 -29.82192 -28.56330 -27.95610 -26.45440 -24.26318 -22.01007 -21.45038 -21.23361 -20.01910 -19.21235 -18.49341 -17.20617 -16.91997 -16.87237 -16.40098 -15.76208 -15.68213 -14.95066 -14.80190 -14.70052 -14.33127 -14.01336 -13.90066 -13.78780 -13.55562 -13.51007 -13.30740 -13.05907 -12.90538 -12.83415 -12.57485 -12.40860 -12.36708 -12.31419 -12.20194 -11.29640 -11.04463 -10.68911 -10.39134 -9.76999 -9.62527 -8.93959 -8.28579 -6.46886 0.43603 1.42541 1.42967 1.51508 1.74361 1.93011 2.23302 2.31577 2.37351 2.97269 3.59033 3.63824 3.95220 3.99698 4.03929 4.13688 4.20100 4.32654 4.40478 4.65412 4.65899 4.82463 4.85536 4.86824 4.93402 4.96138 4.96848 5.12109 5.18720 5.24154 5.32671 5.39608 5.48881 5.71337 5.85932 5.98232 6.00210 6.50183 6.54784 6.63536 7.08614 7.24075 7.31252 8.76728 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030043 B = 0.004689 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.760345 B = 5970.551751 C = 6598.412993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.063 3.937 3 C -0.221 4.221 4 C -0.089 4.089 5 C -0.086 4.086 6 C -0.086 4.086 7 C 0.584 3.416 8 O -0.582 6.582 9 N -0.616 5.616 10 C 0.097 3.903 11 C -0.110 4.110 12 C 0.234 3.766 13 O -0.590 6.590 14 C -0.559 4.559 15 H 0.073 0.927 16 C 0.026 3.974 17 N -0.918 5.918 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.269 1.269 22 C 0.109 3.891 23 N -0.535 5.535 24 H 0.423 0.577 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.168 0.832 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.376 0.624 37 H 0.271 0.729 38 H 0.045 0.955 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 9.104 3.473 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.244 4.244 4 C -0.098 4.098 5 C -0.143 4.143 6 C -0.198 4.198 7 C 0.376 3.624 8 O -0.464 6.464 9 N -0.348 5.348 10 C -0.025 4.025 11 C -0.147 4.147 12 C 0.193 3.807 13 O -0.399 6.399 14 C -0.597 4.597 15 H 0.091 0.909 16 C -0.175 4.175 17 N -0.557 5.557 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.194 1.194 22 C -0.014 4.014 23 N -0.137 5.137 24 H 0.267 0.733 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.186 0.814 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.736 9.286 3.496 18.603 hybrid contribution 1.868 -1.298 -0.031 2.275 sum -13.868 7.988 3.465 16.374 Atomic orbital electron populations 1.20589 0.84175 1.05133 1.04491 1.21316 0.95573 0.85435 1.03206 1.20861 0.90358 0.99545 1.13672 1.20268 0.97056 0.90735 1.01732 1.20294 0.93895 0.98138 1.02003 1.19914 0.83324 0.94092 1.22485 1.17314 0.88086 0.80520 0.76491 1.90734 1.26357 1.75122 1.54156 1.48697 1.09772 1.04676 1.71695 1.22304 0.85211 0.93683 1.01327 1.22632 0.96494 0.93364 1.02227 1.19836 0.92155 0.90062 0.78613 1.86056 1.35284 1.96754 1.21763 1.21788 0.97274 1.06607 1.34080 0.90884 1.25863 0.98106 0.99419 0.94109 1.69770 1.12710 1.36198 1.37014 0.85472 0.77173 0.79411 0.78782 1.19233 1.21206 1.19447 1.22863 0.89887 0.89348 0.99319 1.42573 1.04445 1.09871 1.56844 0.73286 0.88920 0.87925 0.90264 0.81444 0.91812 0.89346 0.93132 0.90848 0.89213 0.88946 0.88664 0.77396 0.92012 0.93629 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.41 71.23 0.74 -0.18 16 2 C 0.06 1.33 7.13 41.34 0.29 1.62 16 3 C -0.22 -5.23 10.66 22.01 0.23 -4.99 16 4 C -0.09 -2.81 6.21 -19.56 -0.12 -2.93 16 5 C -0.09 -2.61 9.83 71.24 0.70 -1.91 16 6 C -0.09 -3.04 6.89 40.35 0.28 -2.77 16 7 C 0.58 25.82 7.82 86.44 0.68 26.50 16 8 O -0.58 -29.98 15.06 -4.35 -0.07 -30.05 16 9 N -0.62 -26.44 3.33 -816.49 -2.72 -29.15 16 10 C 0.10 3.17 5.11 86.73 0.44 3.61 16 11 C -0.11 -4.01 6.13 31.78 0.19 -3.82 16 12 C 0.23 11.29 0.89 -10.15 -0.01 11.28 16 13 O -0.59 -30.63 13.19 -148.98 -1.96 -32.60 16 14 C -0.56 -28.81 8.26 25.60 0.21 -28.59 16 15 H 0.07 3.58 7.78 -2.92 -0.02 3.56 16 16 C 0.03 1.35 5.27 84.66 0.45 1.80 16 17 N -0.92 -50.46 10.68 21.45 0.23 -50.23 16 18 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C 0.11 5.47 5.51 86.86 0.48 5.95 16 23 N -0.54 -13.95 5.61 -171.95 -0.97 -14.92 16 24 H 0.42 9.34 4.92 -92.71 -0.46 8.89 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.83 6.49 -2.39 -0.02 1.82 16 32 H 0.07 2.18 7.09 -2.39 -0.02 2.16 16 33 H 0.09 2.28 7.23 -2.39 -0.02 2.26 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.09 3.19 8.02 -2.39 -0.02 3.17 16 36 H 0.38 20.71 7.18 -74.06 -0.53 20.18 16 37 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.05 2.37 8.03 -2.38 -0.02 2.35 16 39 H 0.04 2.56 7.48 -2.39 -0.02 2.54 16 Total: -1.00 -69.13 318.27 1.21 -67.92 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.09 Total: 39.93 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.57 Total: 5.57 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.45 Total: -94.29 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -2.03 Total: -62.64 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.13 1.21 -67.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.931 kcal (2) G-P(sol) polarization free energy of solvation -69.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds