Wall clock time and date at job start Tue Mar 31 2020 00:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35455 * 125.56204 * 2 1 4 4 C 1.39841 * 107.86333 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.45785 * 179.97438 * 4 3 2 6 6 C 1.37873 * 107.08368 * 359.97438 * 4 3 2 7 7 C 1.46674 * 126.23304 * 180.02562 * 6 4 3 8 8 O 1.21699 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.47020 * 125.64414 * 359.96280 * 9 7 6 11 11 C 1.54423 * 107.27932 * 181.09077 * 10 9 7 12 12 C 1.55155 * 102.89653 * 22.18735 * 11 10 9 13 13 O 1.42897 * 111.00507 * 82.58919 * 12 11 10 14 14 C 1.50698 * 111.00609 * 206.40540 * 12 11 10 15 15 H 1.08000 * 120.00312 * 351.13463 * 14 12 11 16 16 C 1.37882 * 120.00102 * 171.12812 * 14 12 11 17 17 N 1.31515 * 119.99665 * 5.76884 * 16 14 12 18 18 Si 1.86794 * 120.00115 * 185.76246 * 16 14 12 19 19 H 1.48511 * 109.46944 * 94.97111 * 18 16 14 20 20 H 1.48498 * 109.47250 * 214.96431 * 18 16 14 21 21 H 1.48495 * 109.47486 * 334.97273 * 18 16 14 22 22 C 1.47417 * 125.65131 * 179.97438 * 9 7 6 23 23 N 1.35530 * 125.56657 * 180.25875 * 2 1 3 24 24 H 0.97008 * 125.67773 * 0.08234 * 23 2 1 25 25 H 1.09006 * 109.46743 * 90.02654 * 1 2 3 26 26 H 1.08999 * 109.47370 * 210.02885 * 1 2 3 27 27 H 1.09001 * 109.47411 * 330.03518 * 1 2 3 28 28 H 1.07993 * 126.07460 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47628 * 270.04190 * 5 4 3 30 30 H 1.09003 * 109.46933 * 30.04833 * 5 4 3 31 31 H 1.09000 * 109.46616 * 150.04194 * 5 4 3 32 32 H 1.09000 * 109.88578 * 300.50694 * 10 9 7 33 33 H 1.09001 * 109.88083 * 61.52287 * 10 9 7 34 34 H 1.09007 * 110.72563 * 263.84667 * 11 10 9 35 35 H 1.09002 * 110.76268 * 140.54081 * 11 10 9 36 36 H 0.96703 * 114.00494 * 183.18275 * 13 12 11 37 37 H 0.96998 * 120.00047 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.36789 * 37.00082 * 22 9 7 39 39 H 1.09003 * 110.37127 * 274.67886 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 0.0006 5 6 4.8486 1.5592 0.0003 6 6 3.6122 -0.7019 0.0015 7 6 4.7859 -1.5815 0.0029 8 8 5.9049 -1.1030 0.0029 9 7 4.6253 -2.9197 0.0043 10 6 3.3369 -3.6279 0.0053 11 6 3.6452 -5.1408 0.0347 12 6 5.0814 -5.1902 0.6197 13 8 5.0563 -5.1130 2.0464 14 6 5.8091 -6.4277 0.1613 15 1 5.2757 -7.2026 -0.3692 16 6 7.1561 -6.5706 0.4189 17 7 7.7812 -5.6833 1.1615 18 14 8.0929 -8.0245 -0.2866 19 1 8.7402 -7.6245 -1.5620 20 1 9.1321 -8.4602 0.6805 21 1 7.1512 -9.1445 -0.5395 22 6 5.7122 -3.9155 0.0052 23 7 2.2953 -1.1024 -0.0050 24 1 1.9834 -2.0210 -0.0103 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5143 27 1 -0.3634 0.8903 0.5133 28 1 1.9545 2.1268 -0.0004 29 1 5.1430 1.7719 -1.0274 30 1 4.6221 2.4934 0.5142 31 1 5.6643 1.0505 0.5140 32 1 2.7616 -3.3497 0.8882 33 1 2.7764 -3.3791 -0.8959 34 1 3.6242 -5.5584 -0.9719 35 1 2.9455 -5.6651 0.6856 36 1 5.9327 -5.0913 2.4546 37 1 8.7287 -5.7840 1.3431 38 1 6.5432 -3.5695 0.6198 39 1 6.0483 -4.1114 -1.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:36 Heat of formation + Delta-G solvation = -42.704571 kcal Electronic energy + Delta-G solvation = -22227.746856 eV Core-core repulsion = 18942.850794 eV Total energy + Delta-G solvation = -3284.896062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31602 -38.99029 -37.14109 -34.45601 -32.55483 -32.28973 -31.58999 -30.17205 -28.22099 -27.40387 -26.47417 -24.79783 -22.75863 -20.63884 -20.11566 -19.67676 -18.78521 -17.29577 -16.96924 -15.54800 -15.38760 -15.29955 -14.67113 -14.47760 -14.23190 -13.39541 -13.34727 -13.23791 -12.95412 -12.83727 -12.79590 -12.70523 -12.15763 -12.07304 -11.87996 -11.69280 -11.50396 -11.29485 -11.09896 -10.90859 -10.74596 -10.53602 -10.26289 -9.51089 -9.37440 -8.74958 -8.62516 -8.43863 -8.04187 -7.68927 -6.33423 -4.43170 1.73203 2.81340 3.17269 3.21880 3.26022 3.28113 3.61712 3.80148 4.22770 4.81513 4.91321 4.99123 5.08564 5.16015 5.33625 5.36942 5.38359 5.51143 5.59112 5.71930 5.81426 5.87016 6.00060 6.07306 6.13201 6.32728 6.36014 6.58381 6.60590 6.75801 6.84446 7.00099 7.13723 7.20441 7.30481 7.53946 7.68619 7.94659 8.13023 8.60436 8.70091 9.23657 9.34369 10.73918 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.004734 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.696168 B = 5913.619390 C = 6538.015883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.036 3.964 3 C -0.209 4.209 4 C -0.084 4.084 5 C -0.087 4.087 6 C -0.042 4.042 7 C 0.593 3.407 8 O -0.535 6.535 9 N -0.610 5.610 10 C 0.095 3.905 11 C -0.115 4.115 12 C 0.249 3.751 13 O -0.585 6.585 14 C -0.542 4.542 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.890 5.890 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.097 3.903 23 N -0.540 5.540 24 H 0.416 0.584 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.271 0.729 38 H 0.089 0.911 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 8.793 -2.627 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.233 4.233 4 C -0.092 4.092 5 C -0.144 4.144 6 C -0.155 4.155 7 C 0.382 3.618 8 O -0.413 6.413 9 N -0.343 5.343 10 C -0.029 4.029 11 C -0.153 4.153 12 C 0.208 3.792 13 O -0.394 6.394 14 C -0.580 4.580 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.528 5.528 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.024 4.024 23 N -0.141 5.141 24 H 0.259 0.741 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.156 0.844 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.234 0.766 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.252 8.962 -2.653 15.410 hybrid contribution 0.898 -1.182 -0.317 1.518 sum -11.353 7.780 -2.970 14.080 Atomic orbital electron populations 1.20367 0.87964 1.03368 1.02719 1.20489 0.93541 0.86598 1.07492 1.20498 0.91860 0.97631 1.13359 1.19878 0.95370 0.91037 1.02921 1.20303 0.94909 0.97265 1.01939 1.20396 0.83033 0.94174 1.17887 1.16714 0.87285 0.80319 0.77462 1.90778 1.24251 1.74323 1.51970 1.48671 1.09246 1.04821 1.71567 1.22150 0.86591 0.95430 0.98761 1.22635 0.99433 0.91628 1.01615 1.19626 0.89081 0.91064 0.79379 1.86086 1.35442 1.96928 1.20896 1.21442 0.94134 1.04250 1.38209 0.91434 1.25084 0.97607 0.96560 0.93906 1.69704 1.11218 1.35479 1.36423 0.86387 0.79489 0.82074 0.78968 1.20380 1.20947 1.19659 1.23265 0.89833 0.87986 1.01363 1.42616 1.05623 1.08883 1.56967 0.74094 0.90887 0.91673 0.89977 0.84380 0.91853 0.92381 0.90058 0.92429 0.92950 0.90033 0.90477 0.76598 0.91878 0.89300 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.41 36.00 0.37 -0.32 16 2 C 0.04 0.45 7.13 -81.95 -0.58 -0.13 16 3 C -0.21 -2.82 10.66 -39.98 -0.43 -3.24 16 4 C -0.08 -1.37 6.21 -104.16 -0.65 -2.01 16 5 C -0.09 -1.31 9.83 36.01 0.35 -0.96 16 6 C -0.04 -0.75 6.89 -81.98 -0.56 -1.31 16 7 C 0.59 12.62 7.82 -12.85 -0.10 12.52 16 8 O -0.54 -12.87 15.06 5.19 0.08 -12.79 16 9 N -0.61 -12.78 3.33 -171.99 -0.57 -13.35 16 10 C 0.09 1.62 5.12 -3.01 -0.02 1.60 16 11 C -0.12 -2.19 6.14 -24.84 -0.15 -2.35 16 12 C 0.25 5.91 0.88 -89.61 -0.08 5.83 16 13 O -0.58 -14.71 13.18 -35.23 -0.46 -15.17 16 14 C -0.54 -13.84 8.28 -34.44 -0.29 -14.12 16 15 H 0.07 1.69 7.80 -52.49 -0.41 1.28 16 16 C 0.07 1.86 5.24 -17.82 -0.09 1.76 16 17 N -0.89 -23.52 10.70 55.43 0.59 -22.92 16 18 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 C 0.10 2.31 5.37 -2.52 -0.01 2.30 16 23 N -0.54 -7.73 5.61 -5.70 -0.03 -7.76 16 24 H 0.42 5.26 4.92 -40.82 -0.20 5.06 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.42 6.48 -51.93 -0.34 1.08 16 32 H 0.06 0.92 7.11 -51.93 -0.37 0.55 16 33 H 0.05 0.75 7.20 -51.93 -0.37 0.37 16 34 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.38 9.97 7.51 45.56 0.34 10.31 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.09 2.40 7.35 -51.93 -0.38 2.02 16 39 H 0.06 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -29.90 318.36 -7.51 -37.41 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -4.66 Total: 15.17 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.23 Total: -0.44 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.01 Total: -44.04 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.39 Total: -27.96 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.90 -7.51 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.292 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds