Wall clock time and date at job start Tue Mar 31 2020 00:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35455 * 125.56204 * 2 1 4 4 C 1.39841 * 107.86333 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.45785 * 179.97438 * 4 3 2 6 6 C 1.37873 * 107.08368 * 359.97438 * 4 3 2 7 7 C 1.46674 * 126.23304 * 180.02562 * 6 4 3 8 8 O 1.21699 * 119.99894 * 359.97438 * 7 6 4 9 9 N 1.34781 * 120.00332 * 179.97438 * 7 6 4 10 10 C 1.47020 * 125.64414 * 359.96280 * 9 7 6 11 11 C 1.54423 * 107.27932 * 181.09077 * 10 9 7 12 12 C 1.55155 * 102.89653 * 22.18735 * 11 10 9 13 13 O 1.42897 * 111.00507 * 82.58919 * 12 11 10 14 14 C 1.50698 * 111.00609 * 206.40540 * 12 11 10 15 15 H 1.08000 * 120.00312 * 351.13463 * 14 12 11 16 16 C 1.37882 * 120.00102 * 171.12812 * 14 12 11 17 17 N 1.31515 * 119.99665 * 5.76884 * 16 14 12 18 18 Si 1.86794 * 120.00115 * 185.76246 * 16 14 12 19 19 H 1.48511 * 109.46944 * 94.97111 * 18 16 14 20 20 H 1.48498 * 109.47250 * 214.96431 * 18 16 14 21 21 H 1.48495 * 109.47486 * 334.97273 * 18 16 14 22 22 C 1.47417 * 125.65131 * 179.97438 * 9 7 6 23 23 N 1.35530 * 125.56657 * 180.25875 * 2 1 3 24 24 H 0.97008 * 125.67773 * 0.08234 * 23 2 1 25 25 H 1.09006 * 109.46743 * 90.02654 * 1 2 3 26 26 H 1.08999 * 109.47370 * 210.02885 * 1 2 3 27 27 H 1.09001 * 109.47411 * 330.03518 * 1 2 3 28 28 H 1.07993 * 126.07460 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.47628 * 270.04190 * 5 4 3 30 30 H 1.09003 * 109.46933 * 30.04833 * 5 4 3 31 31 H 1.09000 * 109.46616 * 150.04194 * 5 4 3 32 32 H 1.09000 * 109.88578 * 300.50694 * 10 9 7 33 33 H 1.09001 * 109.88083 * 61.52287 * 10 9 7 34 34 H 1.09007 * 110.72563 * 263.84667 * 11 10 9 35 35 H 1.09002 * 110.76268 * 140.54081 * 11 10 9 36 36 H 0.96703 * 114.00494 * 183.18275 * 13 12 11 37 37 H 0.96998 * 120.00047 * 179.97438 * 17 16 14 38 38 H 1.09000 * 110.36789 * 37.00082 * 22 9 7 39 39 H 1.09003 * 110.37127 * 274.67886 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6768 0.0006 5 6 4.8486 1.5592 0.0003 6 6 3.6122 -0.7019 0.0015 7 6 4.7859 -1.5815 0.0029 8 8 5.9049 -1.1030 0.0029 9 7 4.6253 -2.9197 0.0043 10 6 3.3369 -3.6279 0.0053 11 6 3.6452 -5.1408 0.0347 12 6 5.0814 -5.1902 0.6197 13 8 5.0563 -5.1130 2.0464 14 6 5.8091 -6.4277 0.1613 15 1 5.2757 -7.2026 -0.3692 16 6 7.1561 -6.5706 0.4189 17 7 7.7812 -5.6833 1.1615 18 14 8.0929 -8.0245 -0.2866 19 1 8.7402 -7.6245 -1.5620 20 1 9.1321 -8.4602 0.6805 21 1 7.1512 -9.1445 -0.5395 22 6 5.7122 -3.9155 0.0052 23 7 2.2953 -1.1024 -0.0050 24 1 1.9834 -2.0210 -0.0103 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5143 27 1 -0.3634 0.8903 0.5133 28 1 1.9545 2.1268 -0.0004 29 1 5.1430 1.7719 -1.0274 30 1 4.6221 2.4934 0.5142 31 1 5.6643 1.0505 0.5140 32 1 2.7616 -3.3497 0.8882 33 1 2.7764 -3.3791 -0.8959 34 1 3.6242 -5.5584 -0.9719 35 1 2.9455 -5.6651 0.6856 36 1 5.9327 -5.0913 2.4546 37 1 8.7287 -5.7840 1.3431 38 1 6.5432 -3.5695 0.6198 39 1 6.0483 -4.1114 -1.0130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349456044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:35 Heat of formation + Delta-G solvation = -63.885011 kcal Electronic energy + Delta-G solvation = -22228.665309 eV Core-core repulsion = 18942.850794 eV Total energy + Delta-G solvation = -3285.814515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.50608 -40.58490 -38.86399 -36.23749 -34.28162 -33.70520 -32.70518 -31.72351 -29.80359 -28.56206 -27.95744 -26.45063 -24.27224 -22.00962 -21.46572 -21.23475 -20.01995 -19.16979 -18.49180 -17.22921 -16.93904 -16.86609 -16.39441 -15.77767 -15.67259 -14.94782 -14.78063 -14.73899 -14.31829 -14.02206 -13.90840 -13.78527 -13.55330 -13.47902 -13.32285 -13.04561 -12.91687 -12.88393 -12.57044 -12.41759 -12.39044 -12.27421 -12.19387 -11.28101 -11.04663 -10.69491 -10.36845 -9.77375 -9.62723 -8.94033 -8.29063 -6.46216 0.43549 1.40086 1.42819 1.52669 1.74371 1.92595 2.23128 2.31604 2.37105 2.97663 3.58010 3.63821 3.94672 4.00204 4.02508 4.13785 4.20110 4.32513 4.39644 4.65118 4.65896 4.81879 4.85526 4.87427 4.93237 4.96580 4.96679 5.11973 5.18633 5.23594 5.32106 5.41220 5.48954 5.70862 5.85916 5.98929 6.01620 6.50071 6.54774 6.64240 7.08460 7.21813 7.31779 8.76652 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.004734 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.696168 B = 5913.619390 C = 6538.015883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.064 3.936 3 C -0.221 4.221 4 C -0.089 4.089 5 C -0.086 4.086 6 C -0.086 4.086 7 C 0.584 3.416 8 O -0.582 6.582 9 N -0.617 5.617 10 C 0.097 3.903 11 C -0.109 4.109 12 C 0.233 3.767 13 O -0.590 6.590 14 C -0.559 4.559 15 H 0.072 0.928 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.965 3.035 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.263 1.263 22 C 0.110 3.890 23 N -0.535 5.535 24 H 0.423 0.577 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.168 0.832 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.375 0.625 37 H 0.270 0.730 38 H 0.046 0.954 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 9.233 -3.389 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.055 4.055 3 C -0.244 4.244 4 C -0.098 4.098 5 C -0.143 4.143 6 C -0.198 4.198 7 C 0.376 3.624 8 O -0.463 6.463 9 N -0.349 5.349 10 C -0.026 4.026 11 C -0.146 4.146 12 C 0.193 3.807 13 O -0.397 6.397 14 C -0.597 4.597 15 H 0.090 0.910 16 C -0.174 4.174 17 N -0.554 5.554 18 Si 0.790 3.210 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.013 4.013 23 N -0.137 5.137 24 H 0.267 0.733 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.186 0.814 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.223 0.777 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.788 9.381 -3.421 18.680 hybrid contribution 1.903 -1.229 -0.073 2.267 sum -13.885 8.152 -3.494 16.475 Atomic orbital electron populations 1.20589 0.84177 1.05144 1.04482 1.21317 0.95572 0.85436 1.03196 1.20861 0.90359 0.99543 1.13681 1.20267 0.97053 0.90736 1.01721 1.20294 0.93860 0.98081 1.02107 1.19914 0.83323 0.94088 1.22503 1.17310 0.88086 0.80509 0.76487 1.90734 1.26361 1.75109 1.54137 1.48699 1.09773 1.04690 1.71721 1.22325 0.85202 0.93680 1.01345 1.22644 0.96439 0.93348 1.02218 1.19870 0.92172 0.90138 0.78562 1.86076 1.34753 1.96947 1.21964 1.21791 0.94679 1.05001 1.38221 0.90999 1.25849 0.98558 0.98878 0.94150 1.69832 1.11218 1.36944 1.37401 0.85437 0.78218 0.79360 0.78005 1.20377 1.20985 1.18660 1.22819 0.89870 0.89259 0.99335 1.42572 1.04444 1.09872 1.56839 0.73282 0.88942 0.90251 0.87914 0.81449 0.91478 0.89487 0.93312 0.90843 0.89231 0.88658 0.88933 0.77652 0.92100 0.93552 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 10.41 71.23 0.74 -0.18 16 2 C 0.06 1.32 7.13 41.34 0.29 1.62 16 3 C -0.22 -5.22 10.66 22.01 0.23 -4.98 16 4 C -0.09 -2.80 6.21 -19.56 -0.12 -2.92 16 5 C -0.09 -2.61 9.83 71.24 0.70 -1.91 16 6 C -0.09 -3.04 6.89 40.35 0.28 -2.76 16 7 C 0.58 25.78 7.82 86.45 0.68 26.46 16 8 O -0.58 -29.93 15.06 -4.34 -0.07 -30.00 16 9 N -0.62 -26.40 3.33 -816.26 -2.71 -29.11 16 10 C 0.10 3.15 5.12 86.76 0.44 3.60 16 11 C -0.11 -3.98 6.14 31.82 0.20 -3.79 16 12 C 0.23 11.22 0.88 -10.14 -0.01 11.21 16 13 O -0.59 -30.41 13.18 -148.98 -1.96 -32.37 16 14 C -0.56 -28.83 8.28 25.60 0.21 -28.61 16 15 H 0.07 3.56 7.80 -2.91 -0.02 3.53 16 16 C 0.03 1.41 5.24 84.66 0.44 1.85 16 17 N -0.92 -50.34 10.70 21.45 0.23 -50.11 16 18 Si 0.96 41.64 29.54 68.60 2.03 43.66 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 22 C 0.11 5.52 5.37 86.86 0.47 5.99 16 23 N -0.54 -13.91 5.61 -171.94 -0.96 -14.88 16 24 H 0.42 9.31 4.92 -92.70 -0.46 8.85 16 25 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.79 6.48 -2.39 -0.02 1.78 16 32 H 0.07 2.17 7.11 -2.39 -0.02 2.15 16 33 H 0.09 2.27 7.20 -2.39 -0.02 2.26 16 34 H 0.09 3.20 8.03 -2.38 -0.02 3.18 16 35 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.37 20.44 7.51 -74.06 -0.56 19.89 16 37 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.05 2.69 7.35 -2.39 -0.02 2.67 16 39 H 0.04 2.32 8.03 -2.39 -0.02 2.30 16 Total: -1.00 -69.13 318.36 1.17 -67.96 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: 0.07 Total: 39.28 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 4.56 Total: 5.57 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -3.45 Total: -94.10 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -2.03 Total: -62.37 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.13 1.17 -67.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.072 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds