Wall clock time and date at job start Mon Mar 30 2020 23:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99762 * 2 1 4 4 C 1.53002 * 109.47344 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46968 * 65.00101 * 4 3 2 6 6 C 1.36792 * 120.00037 * 263.15175 * 5 4 3 7 7 H 1.08003 * 120.00311 * 137.05793 * 6 5 4 8 8 C 1.39114 * 119.99986 * 317.04999 * 6 5 4 9 9 N 1.31322 * 119.99953 * 344.64174 * 8 6 5 10 10 Si 1.86796 * 119.99943 * 164.63654 * 8 6 5 11 11 H 1.48501 * 109.47124 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47001 * 120.00072 * 10 8 6 13 13 H 1.48501 * 109.47400 * 240.00282 * 10 8 6 14 14 C 1.34779 * 120.00064 * 83.14850 * 5 4 3 15 15 O 1.21562 * 119.99633 * 356.47762 * 14 5 4 16 16 C 1.47992 * 119.99803 * 176.19803 * 14 5 4 17 17 C 1.39907 * 120.93080 * 332.53290 * 16 14 5 18 18 C 1.38099 * 118.99224 * 179.77973 * 17 16 14 19 19 C 1.50702 * 119.55095 * 180.24996 * 18 17 16 20 20 N 1.31844 * 120.90488 * 0.51435 * 18 17 16 21 21 C 1.31840 * 122.06103 * 359.73700 * 20 18 17 22 22 C 1.50699 * 119.54432 * 179.97438 * 21 20 18 23 23 C 1.38102 * 120.90758 * 0.02562 * 21 20 18 24 24 H 1.08996 * 109.47167 * 59.99754 * 1 2 3 25 25 H 1.08998 * 109.46592 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46795 * 299.99522 * 1 2 3 27 27 H 1.08999 * 109.46884 * 59.99953 * 3 2 1 28 28 H 1.08999 * 109.47335 * 299.99917 * 3 2 1 29 29 H 1.09004 * 109.46689 * 305.00231 * 4 3 2 30 30 H 1.08993 * 109.47557 * 185.00361 * 4 3 2 31 31 H 0.96997 * 119.99933 * 179.97438 * 9 8 6 32 32 H 1.08007 * 120.50483 * 0.02562 * 17 16 14 33 33 H 1.08998 * 109.47418 * 270.25366 * 19 18 17 34 34 H 1.08998 * 109.46904 * 30.25906 * 19 18 17 35 35 H 1.08999 * 109.47062 * 150.25755 * 19 18 17 36 36 H 1.09003 * 109.47126 * 270.02231 * 22 21 20 37 37 H 1.09002 * 109.47286 * 30.02002 * 22 21 20 38 38 H 1.08997 * 109.47446 * 150.01884 * 22 21 20 39 39 H 1.08001 * 120.50281 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5642 -1.2509 6 6 4.2327 -0.7788 -1.2952 7 1 3.8909 -1.3663 -2.1346 8 6 4.9335 -1.3879 -0.2593 9 7 5.6054 -0.6552 0.5987 10 14 4.9186 -3.2480 -0.0887 11 1 4.0943 -3.8380 -1.1738 12 1 6.3073 -3.7651 -0.1856 13 1 4.3428 -3.6197 1.2288 14 6 4.1303 1.3164 -2.3586 15 8 3.8417 2.4971 -2.3363 16 6 4.6562 0.7064 -3.6002 17 6 5.5059 -0.4040 -3.5519 18 6 5.9695 -0.9440 -4.7353 19 6 6.8809 -2.1437 -4.6982 20 7 5.6300 -0.4213 -5.8971 21 6 4.8362 0.6275 -5.9874 22 6 4.4853 1.1791 -7.3452 23 6 4.3228 1.2282 -4.8548 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1766 0.0903 31 1 6.0937 -1.0798 1.3212 32 1 5.7916 -0.8349 -2.6036 33 1 7.9176 -1.8111 -4.6483 34 1 6.6505 -2.7479 -3.8207 35 1 6.7336 -2.7399 -5.5987 36 1 5.2180 1.9338 -7.6312 37 1 4.4903 0.3719 -8.0777 38 1 3.4939 1.6306 -7.3089 39 1 3.6728 2.0868 -4.9364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358286295.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:20 Heat of formation + Delta-G solvation = -61.045839 kcal Electronic energy + Delta-G solvation = -22334.530957 eV Core-core repulsion = 19048.839558 eV Total energy + Delta-G solvation = -3285.691399 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56770 -40.14130 -38.55815 -36.81079 -34.55587 -33.75258 -33.63213 -30.85805 -29.88361 -27.66384 -27.20164 -26.88097 -25.07142 -23.13440 -22.64422 -21.01525 -19.12186 -18.10921 -17.43232 -17.18926 -16.78014 -16.63821 -16.35211 -16.11334 -15.65927 -15.64804 -15.21615 -14.94780 -14.41712 -14.06450 -13.97341 -13.64377 -13.40545 -13.18328 -13.08022 -12.94325 -12.85499 -12.73213 -12.60475 -12.53720 -12.38268 -12.06321 -11.85669 -11.08694 -10.90157 -10.60049 -10.55846 -10.21476 -9.63893 -9.45400 -8.33281 -6.07623 -0.03084 0.24846 1.42429 1.49218 1.60367 2.04182 2.28853 2.74051 2.87712 2.96208 3.15649 3.34802 3.87617 3.95496 4.18506 4.21563 4.28913 4.36998 4.48970 4.53584 4.56470 4.59796 4.67100 4.76018 4.77192 4.80796 4.82824 4.86594 4.87740 5.14745 5.24492 5.27338 5.31000 5.42587 5.48866 5.85833 5.91840 6.35095 6.36785 7.05347 7.06151 7.43165 7.87060 8.70612 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.007746 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.967617 B = 3613.995697 C = 4823.749026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.062 3.938 4 C 0.119 3.881 5 N -0.419 5.419 6 C -0.329 4.329 7 H 0.083 0.917 8 C 0.016 3.984 9 N -0.886 5.886 10 Si 0.971 3.029 11 H -0.262 1.262 12 H -0.268 1.268 13 H -0.280 1.280 14 C 0.489 3.511 15 O -0.629 6.629 16 C -0.072 4.072 17 C -0.138 4.138 18 C 0.105 3.895 19 C -0.095 4.095 20 N -0.489 5.489 21 C 0.110 3.890 22 C -0.091 4.091 23 C -0.152 4.152 24 H 0.037 0.963 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.276 0.724 32 H 0.158 0.842 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 -2.576 -6.117 7.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.015 4.015 4 C -0.005 4.005 5 N -0.134 5.134 6 C -0.457 4.457 7 H 0.101 0.899 8 C -0.188 4.188 9 N -0.523 5.523 10 Si 0.794 3.206 11 H -0.185 1.185 12 H -0.193 1.193 13 H -0.206 1.206 14 C 0.279 3.721 15 O -0.519 6.519 16 C -0.083 4.083 17 C -0.158 4.158 18 C -0.032 4.032 19 C -0.152 4.152 20 N -0.201 5.201 21 C -0.028 4.028 22 C -0.148 4.148 23 C -0.173 4.173 24 H 0.055 0.945 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.176 0.824 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.703 -2.584 -6.615 7.599 hybrid contribution -0.601 0.177 1.468 1.596 sum -3.304 -2.407 -5.147 6.573 Atomic orbital electron populations 1.22893 0.80494 1.03439 1.00271 1.88040 1.20608 1.27772 1.95341 1.22817 0.94307 0.84693 0.99713 1.21410 0.91510 0.97851 0.89688 1.43335 1.54732 1.07997 1.07342 1.19394 1.34680 0.82434 1.09197 0.89898 1.26074 0.93293 1.03714 0.95741 1.69928 1.28048 1.38019 1.16266 0.85210 0.78600 0.78130 0.78653 1.18539 1.19259 1.20560 1.18788 0.81974 0.85484 0.85848 1.90553 1.58123 1.17043 1.86173 1.20446 0.97799 0.96158 0.93885 1.23034 0.96262 0.95068 1.01461 1.21722 0.96484 0.97536 0.87446 1.20724 0.97588 0.92830 1.04065 1.67271 1.13100 1.11197 1.28583 1.21671 0.92876 0.91485 0.96719 1.20725 1.02872 1.01567 0.89681 1.22104 1.02231 1.01310 0.91617 0.94479 0.88657 0.92734 0.91091 0.95058 0.88654 0.92217 0.91455 0.82425 0.89355 0.90176 0.89396 0.89268 0.89678 0.89373 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.55 10.50 -148.98 -1.56 -18.11 16 3 C 0.06 2.57 6.22 71.98 0.45 3.02 16 4 C 0.12 5.72 5.18 86.38 0.45 6.17 16 5 N -0.42 -21.45 2.44 -638.67 -1.56 -23.01 16 6 C -0.33 -16.46 5.78 84.13 0.49 -15.97 16 7 H 0.08 4.20 6.75 -2.91 -0.02 4.18 16 8 C 0.02 0.78 4.74 84.98 0.40 1.18 16 9 N -0.89 -45.15 11.59 21.69 0.25 -44.90 16 10 Si 0.97 38.51 29.58 68.60 2.03 40.54 16 11 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 12 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 14 C 0.49 25.34 7.41 86.83 0.64 25.99 16 15 O -0.63 -34.66 16.29 -3.91 -0.06 -34.72 16 16 C -0.07 -3.33 5.57 -19.88 -0.11 -3.44 16 17 C -0.14 -5.92 7.66 22.64 0.17 -5.75 16 18 C 0.11 3.86 6.78 42.52 0.29 4.15 16 19 C -0.09 -2.66 10.16 71.24 0.72 -1.93 16 20 N -0.49 -17.54 10.16 -172.26 -1.75 -19.29 16 21 C 0.11 3.78 6.78 42.52 0.29 4.07 16 22 C -0.09 -2.15 10.16 71.24 0.72 -1.43 16 23 C -0.15 -6.03 9.32 22.64 0.21 -5.82 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.03 1.36 7.95 -2.39 -0.02 1.34 16 29 H 0.10 4.84 5.83 -2.38 -0.01 4.83 16 30 H 0.06 2.93 7.69 -2.39 -0.02 2.91 16 31 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 32 H 0.16 7.25 5.29 -2.91 -0.02 7.24 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 39 H 0.14 5.16 7.96 -2.91 -0.02 5.14 16 Total: -1.00 -63.79 329.74 4.36 -59.43 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 1.05 Total: 27.84 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.97 Total: 12.24 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -3.06 Total: -87.21 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -1.63 Total: -52.84 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -63.79 4.36 -59.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358286295.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.619 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds