Wall clock time and date at job start Tue Mar 31 2020 00:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31668 * 119.68079 * 2 1 4 4 C 1.32409 * 121.79829 * 179.97438 * 3 2 1 5 5 O 1.35496 * 119.52739 * 180.02562 * 4 3 2 6 6 C 1.39168 * 120.94547 * 359.97438 * 4 3 2 7 7 C 1.37949 * 119.26626 * 0.06565 * 6 4 3 8 8 C 1.39520 * 119.69149 * 180.02562 * 2 1 3 9 9 C 1.47617 * 120.49468 * 359.72331 * 8 2 1 10 10 O 1.21587 * 120.00227 * 305.34845 * 9 8 2 11 11 N 1.34782 * 120.00031 * 125.34446 * 9 8 2 12 12 C 1.46494 * 120.00097 * 183.78805 * 11 9 8 13 13 C 1.50705 * 109.47051 * 90.00496 * 12 11 9 14 14 H 1.07996 * 119.99751 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99996 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00104 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99896 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47320 * 89.99913 * 17 15 13 19 19 H 1.48504 * 109.46949 * 209.99526 * 17 15 13 20 20 H 1.48495 * 109.47024 * 329.99388 * 17 15 13 21 21 C 1.46503 * 119.99714 * 3.79462 * 11 9 8 22 22 C 1.52995 * 109.47332 * 114.18442 * 21 11 9 23 23 C 1.52999 * 109.46823 * 234.18828 * 21 11 9 24 24 H 1.09002 * 109.46926 * 274.08177 * 1 2 3 25 25 H 1.08999 * 109.47595 * 34.08364 * 1 2 3 26 26 H 1.09004 * 109.46794 * 154.08765 * 1 2 3 27 27 H 0.96699 * 113.99872 * 90.00343 * 5 4 3 28 28 H 1.08001 * 120.36789 * 179.97438 * 6 4 3 29 29 H 1.08000 * 120.82273 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47082 * 210.00218 * 12 11 9 31 31 H 1.09002 * 109.47591 * 330.00462 * 12 11 9 32 32 H 0.97000 * 120.00335 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.47122 * 354.17992 * 21 11 9 34 34 H 1.09003 * 109.46731 * 59.99744 * 22 21 11 35 35 H 1.08998 * 109.47056 * 179.97438 * 22 21 11 36 36 H 1.08999 * 109.47051 * 299.99896 * 22 21 11 37 37 H 1.09001 * 109.47332 * 59.99362 * 23 21 11 38 38 H 1.08998 * 109.47506 * 180.02562 * 23 21 11 39 39 H 1.09003 * 109.46943 * 300.00074 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1439 0.0000 4 6 3.4822 1.1928 0.0005 5 8 4.1059 2.3957 0.0010 6 6 4.2414 0.0265 0.0016 7 6 3.6008 -1.1952 0.0008 8 6 2.1981 -1.2120 -0.0005 9 6 1.4642 -2.4928 0.0050 10 8 0.6370 -2.7158 0.8678 11 7 1.7110 -3.4151 -0.9463 12 6 0.9250 -4.6506 -0.9903 13 6 -0.2874 -4.4439 -1.8611 14 1 -0.4558 -3.4878 -2.3342 15 6 -1.1821 -5.4752 -2.0531 16 7 -0.9773 -6.6394 -1.4767 17 14 -2.6846 -5.2192 -3.1332 18 1 -2.3528 -5.5769 -4.5357 19 1 -3.7933 -6.0819 -2.6515 20 1 -3.1023 -3.7956 -3.0709 21 6 2.7654 -3.1820 -1.9364 22 6 3.8851 -4.2059 -1.7396 23 6 2.1839 -3.3263 -3.3442 24 1 -0.3633 0.0732 1.0251 25 1 -0.3634 0.8511 -0.5759 26 1 -0.3633 -0.9244 -0.4491 27 1 4.2867 2.7446 0.8846 28 1 5.3202 0.0773 0.0016 29 1 4.1652 -2.1160 0.0012 30 1 1.5350 -5.4548 -1.4016 31 1 0.6071 -4.9151 0.0183 32 1 -1.6066 -7.3650 -1.6120 33 1 3.1664 -2.1764 -1.8103 34 1 3.4841 -5.2116 -1.8658 35 1 4.6694 -4.0328 -2.4765 36 1 4.2994 -4.1031 -0.7367 37 1 1.3862 -2.5969 -3.4843 38 1 2.9684 -3.1534 -4.0809 39 1 1.7829 -4.3320 -3.4703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442575125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:01 Heat of formation + Delta-G solvation = -40.814920 kcal Electronic energy + Delta-G solvation = -22374.659229 eV Core-core repulsion = 19089.845109 eV Total energy + Delta-G solvation = -3284.814120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82919 -39.02217 -37.10623 -36.07296 -33.21072 -32.74740 -31.53027 -30.91015 -28.16543 -26.95826 -26.68437 -24.15313 -22.97771 -22.12665 -21.34012 -18.83408 -18.72315 -17.09236 -16.80015 -16.46276 -15.86621 -15.41644 -14.63267 -14.28234 -14.12339 -13.77996 -13.74167 -13.44164 -13.17661 -12.70176 -12.34691 -12.33666 -12.12047 -11.99832 -11.75488 -11.67573 -11.62562 -11.24154 -10.97521 -10.92601 -10.66620 -10.47231 -10.09890 -9.75408 -9.65241 -9.56035 -9.08348 -8.68640 -8.45094 -7.74454 -6.06787 -4.10579 0.75674 1.12757 3.10796 3.28500 3.35892 3.38907 3.47685 3.60622 3.90530 4.42249 4.51599 4.68840 4.81961 4.98074 5.20330 5.25725 5.28987 5.46492 5.51968 5.57800 5.72168 5.87756 5.88900 5.95081 6.06964 6.14449 6.17960 6.24418 6.32959 6.49938 6.55609 6.93058 7.03427 7.32034 7.40865 7.48213 7.84711 7.89500 8.20123 8.31878 8.82429 8.98632 9.53862 11.01381 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.005501 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.036568 B = 5088.445571 C = 5614.831905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.199 3.801 3 N -0.506 5.506 4 C 0.320 3.680 5 O -0.483 6.483 6 C -0.199 4.199 7 C -0.033 4.033 8 C -0.174 4.174 9 C 0.554 3.446 10 O -0.529 6.529 11 N -0.581 5.581 12 C 0.246 3.754 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.124 3.876 22 C -0.163 4.163 23 C -0.154 4.154 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.400 0.600 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 11.119 1.149 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.061 3.939 3 N -0.226 5.226 4 C 0.141 3.859 5 O -0.290 6.290 6 C -0.220 4.220 7 C -0.059 4.059 8 C -0.180 4.180 9 C 0.339 3.661 10 O -0.406 6.406 11 N -0.312 5.312 12 C 0.127 3.873 13 C -0.560 4.560 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.020 3.980 22 C -0.221 4.221 23 C -0.212 4.212 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.258 0.742 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.058 11.526 1.008 16.004 hybrid contribution -0.163 -0.541 -0.203 0.600 sum 10.895 10.985 0.805 15.492 Atomic orbital electron populations 1.20856 0.87502 1.04188 1.03948 1.21103 0.97055 0.85443 0.90306 1.66999 1.09649 1.30263 1.15659 1.19271 0.86977 0.85192 0.94472 1.84719 1.76774 1.33608 1.33904 1.21935 1.01659 0.91908 1.06485 1.21694 0.93002 0.98494 0.92693 1.21154 0.94660 0.96231 1.05911 1.17809 0.82803 0.82804 0.82678 1.90791 1.34325 1.78448 1.37067 1.48309 1.34694 1.20764 1.27429 1.19304 0.89803 0.79377 0.98791 1.21406 1.07135 0.98200 1.29262 0.92315 1.24907 0.97923 0.95101 0.96059 1.69925 1.37148 1.02713 1.43538 0.86550 0.82590 0.78236 0.80395 1.20681 1.21148 1.19864 1.21198 0.88149 0.98641 0.90032 1.22202 0.97861 1.01034 1.01018 1.22093 1.00129 1.04801 0.94156 0.89460 0.90525 0.89267 0.74249 0.83883 0.83722 0.94625 0.93728 0.92736 0.90486 0.91183 0.92015 0.93016 0.92492 0.93252 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.43 36.01 0.34 -1.40 16 2 C 0.20 3.31 6.82 -82.18 -0.56 2.75 16 3 N -0.51 -7.91 10.29 -9.20 -0.09 -8.01 16 4 C 0.32 4.21 7.74 -16.96 -0.13 4.08 16 5 O -0.48 -5.17 13.55 -18.18 -0.25 -5.42 16 6 C -0.20 -2.29 10.02 -39.34 -0.39 -2.68 16 7 C -0.03 -0.44 7.56 -38.92 -0.29 -0.73 16 8 C -0.17 -2.93 4.83 -104.82 -0.51 -3.43 16 9 C 0.55 11.42 6.07 -12.43 -0.08 11.34 16 10 O -0.53 -12.89 15.59 5.29 0.08 -12.80 16 11 N -0.58 -11.85 2.38 -168.66 -0.40 -12.25 16 12 C 0.25 6.10 4.47 -5.19 -0.02 6.08 16 13 C -0.52 -13.96 7.85 -34.44 -0.27 -14.23 16 14 H 0.06 1.58 7.52 -52.49 -0.39 1.18 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 17 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 C 0.12 2.01 2.52 -67.93 -0.17 1.84 16 22 C -0.16 -2.24 9.04 37.16 0.34 -1.91 16 23 C -0.15 -2.56 8.34 37.16 0.31 -2.25 16 24 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.09 1.66 6.63 -51.93 -0.34 1.31 16 27 H 0.40 2.17 9.06 45.56 0.41 2.58 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.15 1.67 6.39 -52.49 -0.34 1.33 16 30 H 0.04 0.89 6.71 -51.93 -0.35 0.54 16 31 H 0.04 1.26 7.37 -51.93 -0.38 0.88 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.08 1.13 4.64 -51.93 -0.24 0.89 16 34 H 0.07 1.09 6.90 -51.93 -0.36 0.73 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.65 7.25 -51.93 -0.38 0.28 16 37 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.56 6.94 -51.93 -0.36 1.20 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -32.66 322.41 -6.02 -38.67 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.39 Total: 2.60 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.54 Total: 1.06 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.24 Total: -45.26 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.16 Total: -18.22 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.66 -6.02 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442575125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.142 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds