Wall clock time and date at job start Tue Mar 31 2020 00:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31668 * 119.68079 * 2 1 4 4 C 1.32409 * 121.79829 * 179.97438 * 3 2 1 5 5 O 1.35496 * 119.52739 * 180.02562 * 4 3 2 6 6 C 1.39168 * 120.94547 * 359.97438 * 4 3 2 7 7 C 1.37949 * 119.26626 * 0.06565 * 6 4 3 8 8 C 1.39520 * 119.69149 * 180.02562 * 2 1 3 9 9 C 1.47617 * 120.49468 * 359.72331 * 8 2 1 10 10 O 1.21587 * 120.00227 * 305.34845 * 9 8 2 11 11 N 1.34782 * 120.00031 * 125.34446 * 9 8 2 12 12 C 1.46494 * 120.00097 * 183.78805 * 11 9 8 13 13 C 1.50705 * 109.47051 * 90.00496 * 12 11 9 14 14 H 1.07996 * 119.99751 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99996 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00104 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99896 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47320 * 89.99913 * 17 15 13 19 19 H 1.48504 * 109.46949 * 209.99526 * 17 15 13 20 20 H 1.48495 * 109.47024 * 329.99388 * 17 15 13 21 21 C 1.46503 * 119.99714 * 3.79462 * 11 9 8 22 22 C 1.52995 * 109.47332 * 114.18442 * 21 11 9 23 23 C 1.52999 * 109.46823 * 234.18828 * 21 11 9 24 24 H 1.09002 * 109.46926 * 274.08177 * 1 2 3 25 25 H 1.08999 * 109.47595 * 34.08364 * 1 2 3 26 26 H 1.09004 * 109.46794 * 154.08765 * 1 2 3 27 27 H 0.96699 * 113.99872 * 90.00343 * 5 4 3 28 28 H 1.08001 * 120.36789 * 179.97438 * 6 4 3 29 29 H 1.08000 * 120.82273 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47082 * 210.00218 * 12 11 9 31 31 H 1.09002 * 109.47591 * 330.00462 * 12 11 9 32 32 H 0.97000 * 120.00335 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.47122 * 354.17992 * 21 11 9 34 34 H 1.09003 * 109.46731 * 59.99744 * 22 21 11 35 35 H 1.08998 * 109.47056 * 179.97438 * 22 21 11 36 36 H 1.08999 * 109.47051 * 299.99896 * 22 21 11 37 37 H 1.09001 * 109.47332 * 59.99362 * 23 21 11 38 38 H 1.08998 * 109.47506 * 180.02562 * 23 21 11 39 39 H 1.09003 * 109.46943 * 300.00074 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1590 1.1439 0.0000 4 6 3.4822 1.1928 0.0005 5 8 4.1059 2.3957 0.0010 6 6 4.2414 0.0265 0.0016 7 6 3.6008 -1.1952 0.0008 8 6 2.1981 -1.2120 -0.0005 9 6 1.4642 -2.4928 0.0050 10 8 0.6370 -2.7158 0.8678 11 7 1.7110 -3.4151 -0.9463 12 6 0.9250 -4.6506 -0.9903 13 6 -0.2874 -4.4439 -1.8611 14 1 -0.4558 -3.4878 -2.3342 15 6 -1.1821 -5.4752 -2.0531 16 7 -0.9773 -6.6394 -1.4767 17 14 -2.6846 -5.2192 -3.1332 18 1 -2.3528 -5.5769 -4.5357 19 1 -3.7933 -6.0819 -2.6515 20 1 -3.1023 -3.7956 -3.0709 21 6 2.7654 -3.1820 -1.9364 22 6 3.8851 -4.2059 -1.7396 23 6 2.1839 -3.3263 -3.3442 24 1 -0.3633 0.0732 1.0251 25 1 -0.3634 0.8511 -0.5759 26 1 -0.3633 -0.9244 -0.4491 27 1 4.2867 2.7446 0.8846 28 1 5.3202 0.0773 0.0016 29 1 4.1652 -2.1160 0.0012 30 1 1.5350 -5.4548 -1.4016 31 1 0.6071 -4.9151 0.0183 32 1 -1.6066 -7.3650 -1.6120 33 1 3.1664 -2.1764 -1.8103 34 1 3.4841 -5.2116 -1.8658 35 1 4.6694 -4.0328 -2.4765 36 1 4.2994 -4.1031 -0.7367 37 1 1.3862 -2.5969 -3.4843 38 1 2.9684 -3.1534 -4.0809 39 1 1.7829 -4.3320 -3.4703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442575125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:00 Heat of formation + Delta-G solvation = -66.092789 kcal Electronic energy + Delta-G solvation = -22375.755360 eV Core-core repulsion = 19089.845109 eV Total energy + Delta-G solvation = -3285.910251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03982 -40.42046 -38.12674 -37.62638 -35.00990 -34.09268 -32.75714 -32.48401 -29.77714 -28.42790 -27.97781 -25.60902 -24.55568 -23.37343 -22.71511 -20.23790 -19.73068 -18.62371 -18.46024 -17.95938 -17.05319 -16.84285 -16.42353 -15.74090 -15.40613 -15.18682 -14.99236 -14.68454 -14.43426 -14.27665 -13.92050 -13.61603 -13.44642 -13.30748 -13.19161 -13.10452 -12.86850 -12.77667 -12.72243 -12.54674 -12.25709 -12.11855 -11.79142 -11.55634 -11.03681 -10.77490 -10.59699 -10.47434 -9.85808 -9.47097 -8.19092 -6.30480 -0.35641 0.06868 1.37016 1.39435 1.48908 1.68066 2.19045 2.39801 2.41921 2.66563 3.11424 3.44345 3.46208 3.66235 3.94382 3.97689 4.21808 4.28216 4.36396 4.45371 4.51585 4.59703 4.77000 4.83931 4.87209 4.96903 5.00549 5.02301 5.04050 5.10365 5.23750 5.40432 5.43783 5.52077 5.63187 5.85180 6.10456 6.56522 6.67793 6.77236 6.81401 7.25306 7.42166 8.88377 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.005501 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.036568 B = 5088.445571 C = 5614.831905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.186 3.814 3 N -0.525 5.525 4 C 0.326 3.674 5 O -0.484 6.484 6 C -0.176 4.176 7 C -0.025 4.025 8 C -0.197 4.197 9 C 0.552 3.448 10 O -0.582 6.582 11 N -0.584 5.584 12 C 0.265 3.735 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.011 3.989 16 N -0.928 5.928 17 Si 0.957 3.043 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.119 3.881 22 C -0.158 4.158 23 C -0.150 4.150 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.425 0.575 28 H 0.188 0.812 29 H 0.166 0.834 30 H 0.030 0.970 31 H -0.001 1.001 32 H 0.265 0.735 33 H 0.102 0.898 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.775 13.104 0.065 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.049 3.951 3 N -0.245 5.245 4 C 0.146 3.854 5 O -0.295 6.295 6 C -0.196 4.196 7 C -0.051 4.051 8 C -0.202 4.202 9 C 0.339 3.661 10 O -0.463 6.463 11 N -0.314 5.314 12 C 0.144 3.856 13 C -0.565 4.565 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.568 5.568 17 Si 0.782 3.218 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.016 3.984 22 C -0.215 4.215 23 C -0.208 4.208 24 H 0.105 0.895 25 H 0.110 0.890 26 H 0.074 0.926 27 H 0.287 0.713 28 H 0.205 0.795 29 H 0.184 0.816 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.851 13.542 -0.087 19.372 hybrid contribution -0.893 -1.025 0.167 1.369 sum 12.959 12.517 0.081 18.017 Atomic orbital electron populations 1.20734 0.88427 1.02967 1.03891 1.20958 0.96901 0.85891 0.91369 1.66984 1.11318 1.29530 1.16694 1.19596 0.86374 0.86660 0.92720 1.84678 1.76058 1.32614 1.36110 1.22288 1.03554 0.90075 1.03695 1.21923 0.91207 1.00375 0.91587 1.20797 0.96189 0.93782 1.09433 1.18412 0.82227 0.83844 0.81589 1.90744 1.36784 1.79663 1.39093 1.48297 1.35230 1.19385 1.28509 1.18725 0.89888 0.81431 0.95549 1.21604 1.07962 0.97802 1.29107 0.92972 1.25718 1.00782 0.94855 0.97387 1.70038 1.38310 1.03501 1.44923 0.85564 0.79000 0.77943 0.79245 1.19104 1.20870 1.19880 1.21554 0.87560 1.00838 0.88443 1.22175 0.97641 0.98584 1.03129 1.22045 1.00817 1.02206 0.95704 0.89490 0.88989 0.92604 0.71305 0.79456 0.81631 0.95204 0.98310 0.92579 0.88013 0.93714 0.88195 0.91682 0.94380 0.89267 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.46 9.43 71.24 0.67 -2.79 16 2 C 0.19 6.13 6.82 42.89 0.29 6.42 16 3 N -0.52 -15.38 10.29 -295.90 -3.04 -18.42 16 4 C 0.33 7.33 7.74 84.83 0.66 7.99 16 5 O -0.48 -8.20 13.55 -87.97 -1.19 -9.39 16 6 C -0.18 -3.17 10.02 22.42 0.22 -2.95 16 7 C -0.03 -0.59 7.56 22.70 0.17 -0.42 16 8 C -0.20 -6.48 4.83 -20.00 -0.10 -6.58 16 9 C 0.55 23.57 6.07 86.72 0.53 24.09 16 10 O -0.58 -30.24 15.59 -3.99 -0.06 -30.30 16 11 N -0.58 -24.54 2.38 -805.78 -1.92 -26.46 16 12 C 0.26 13.89 4.47 85.64 0.38 14.27 16 13 C -0.53 -29.45 7.85 25.60 0.20 -29.25 16 14 H 0.05 2.92 7.52 -2.91 -0.02 2.90 16 15 C 0.01 0.65 5.46 84.65 0.46 1.11 16 16 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 17 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 21 C 0.12 3.69 2.52 44.99 0.11 3.80 16 22 C -0.16 -3.97 9.04 71.98 0.65 -3.32 16 23 C -0.15 -4.86 8.34 71.98 0.60 -4.26 16 24 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.05 2.22 6.63 -2.38 -0.02 2.21 16 27 H 0.42 2.66 9.06 -74.06 -0.67 1.99 16 28 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.17 3.12 6.39 -2.91 -0.02 3.10 16 30 H 0.03 1.59 6.71 -2.39 -0.02 1.57 16 31 H 0.00 -0.07 7.37 -2.39 -0.02 -0.09 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.10 2.70 4.64 -2.39 -0.01 2.69 16 34 H 0.04 1.36 6.90 -2.39 -0.02 1.34 16 35 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.46 7.25 -2.39 -0.02 1.44 16 37 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 1.94 6.94 -2.39 -0.02 1.92 16 Total: -1.00 -75.73 322.41 1.36 -74.37 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.41 Total: 10.37 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 4.86 Total: 8.12 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.68 Total: -99.87 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.25 Total: -39.69 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.73 1.36 -74.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442575125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.278 kcal (2) G-P(sol) polarization free energy of solvation -75.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds