Wall clock time and date at job start Tue Mar 31 2020 01:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.54525 * 2 1 4 4 C 1.33123 * 119.99991 * 359.82598 * 3 2 1 5 5 C 1.46952 * 120.00157 * 179.97438 * 4 3 2 6 6 O 1.21662 * 120.00101 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99936 * 179.97438 * 5 4 3 8 8 C 1.36818 * 120.00185 * 180.02562 * 7 5 4 9 9 H 1.08003 * 119.99939 * 341.38633 * 8 7 5 10 10 C 1.39073 * 120.00414 * 161.11428 * 8 7 5 11 11 N 1.31352 * 119.99783 * 338.21497 * 10 8 7 12 12 Si 1.86800 * 120.00040 * 158.21917 * 10 8 7 13 13 H 1.48500 * 109.47264 * 89.99903 * 12 10 8 14 14 H 1.48503 * 109.47068 * 209.99831 * 12 10 8 15 15 H 1.48498 * 109.47319 * 329.99922 * 12 10 8 16 16 C 1.46499 * 120.00418 * 0.02562 * 7 5 4 17 17 C 1.47204 * 109.47187 * 275.98449 * 16 7 5 18 18 N 5.68339 * 58.32174 * 329.45267 * 2 1 3 19 19 C 1.53182 * 109.61758 * 120.22735 * 2 1 3 20 20 C 1.53087 * 109.16268 * 62.92822 * 19 2 1 21 21 O 1.42905 * 109.41722 * 57.61348 * 20 19 2 22 22 C 1.42905 * 114.09395 * 298.83408 * 21 20 19 23 23 C 1.53093 * 109.41360 * 61.16150 * 22 21 20 24 24 H 1.09000 * 109.47467 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46829 * 299.99401 * 1 2 3 27 27 H 1.07999 * 120.00077 * 179.82648 * 3 2 1 28 28 H 1.07999 * 119.99931 * 0.02562 * 4 3 2 29 29 H 0.96998 * 119.99589 * 179.97438 * 11 10 8 30 30 H 1.08995 * 109.47005 * 35.97774 * 16 7 5 31 31 H 1.08999 * 109.47683 * 155.98487 * 16 7 5 32 32 H 1.09002 * 109.52193 * 182.83453 * 19 2 1 33 33 H 1.08994 * 109.51710 * 303.01929 * 19 2 1 34 34 H 1.08994 * 109.48248 * 297.62057 * 20 19 2 35 35 H 1.09004 * 109.48712 * 177.59681 * 20 19 2 36 36 H 1.08998 * 109.48510 * 301.17929 * 22 21 20 37 37 H 1.08992 * 109.49083 * 181.14830 * 22 21 20 38 38 H 1.08995 * 109.52752 * 182.48456 * 23 22 21 39 39 H 1.09001 * 109.57605 * 62.32314 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4201 0.0000 4 6 1.1703 2.4331 -0.0035 5 6 1.6619 3.8179 -0.0029 6 8 2.8583 4.0387 0.0003 7 7 0.7874 4.8434 -0.0070 8 6 1.2451 6.1327 -0.0070 9 1 2.2601 6.3455 0.2946 10 6 0.4051 7.1688 -0.4008 11 7 -0.6379 6.9168 -1.1584 12 14 0.7602 8.9189 0.1476 13 1 1.6367 9.5823 -0.8507 14 1 -0.5157 9.6700 0.2628 15 1 1.4417 8.8956 1.4668 16 6 -0.6532 4.5776 -0.0114 17 6 -1.1050 4.3447 -1.3929 18 7 -1.4547 4.1654 -2.4582 19 6 2.0443 -0.7264 1.2467 20 6 1.5931 -2.1885 1.1984 21 8 2.0771 -2.7956 -0.0013 22 6 1.5912 -2.1878 -1.1999 23 6 2.0423 -0.7257 -1.2480 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.0962 1.6161 0.0028 28 1 0.1083 2.2371 -0.0059 29 1 -1.2239 7.6394 -1.4328 30 1 -0.8616 3.6946 0.5926 31 1 -1.1823 5.4352 0.4041 32 1 3.1331 -0.6818 1.2711 33 1 1.6392 -0.2494 2.1391 34 1 0.5042 -2.2336 1.2150 35 1 1.9921 -2.7209 2.0618 36 1 0.5023 -2.2329 -1.2148 37 1 1.9888 -2.7195 -2.0643 38 1 1.6359 -0.2482 -2.1395 39 1 3.1310 -0.6800 -1.2746 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001442986156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:13 Heat of formation + Delta-G solvation = -31.738293 kcal Electronic energy + Delta-G solvation = -21843.253710 eV Core-core repulsion = 18558.833182 eV Total energy + Delta-G solvation = -3284.420528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.07188 -38.76910 -36.13749 -35.62649 -34.34448 -32.00695 -31.22338 -31.03332 -27.70255 -27.50335 -25.77959 -24.34450 -23.65273 -21.40890 -19.03410 -18.06520 -17.68559 -17.12115 -16.32439 -16.07852 -15.83409 -15.07685 -14.73969 -14.62404 -14.54665 -14.01751 -13.60446 -13.33864 -13.01984 -12.73410 -12.49477 -12.09868 -12.04906 -11.89619 -11.65049 -11.48088 -11.37302 -11.35251 -11.15956 -10.80353 -10.76264 -10.62379 -10.43413 -10.35769 -10.26961 -9.51785 -9.31831 -8.83767 -8.61292 -8.07371 -6.57427 -4.01643 2.00535 3.10955 3.19000 3.24411 3.63859 3.78237 3.93445 4.08820 4.20911 4.55135 4.70277 4.72140 4.86324 4.95168 4.96399 5.12855 5.15227 5.20486 5.25951 5.47940 5.50727 5.58554 5.63699 5.69285 5.74430 5.84859 5.91267 6.00766 6.04461 6.14995 6.19378 6.32046 6.43776 6.87845 6.93502 7.08711 7.41041 7.91733 8.26286 8.71772 8.97627 9.15658 9.75389 10.48415 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031936 B = 0.004206 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.537089 B = 6654.878043 C = 7108.732671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.033 4.033 3 C -0.097 4.097 4 C -0.186 4.186 5 C 0.476 3.524 6 O -0.581 6.581 7 N -0.433 5.433 8 C -0.311 4.311 9 H 0.110 0.890 10 C 0.032 3.968 11 N -0.871 5.871 12 Si 0.927 3.073 13 H -0.277 1.277 14 H -0.281 1.281 15 H -0.267 1.267 16 C 0.221 3.779 17 C 0.245 3.755 18 N -0.471 5.471 19 C -0.141 4.141 20 C 0.060 3.940 21 O -0.385 6.385 22 C 0.060 3.940 23 C -0.143 4.143 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.275 0.725 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 -13.974 5.861 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 C -0.118 4.118 4 C -0.207 4.207 5 C 0.268 3.732 6 O -0.466 6.466 7 N -0.151 5.151 8 C -0.439 4.439 9 H 0.127 0.873 10 C -0.173 4.173 11 N -0.509 5.509 12 Si 0.753 3.247 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.191 1.191 16 C 0.093 3.907 17 C -0.073 4.073 18 N -0.151 5.151 19 C -0.178 4.178 20 C -0.017 4.017 21 O -0.304 6.304 22 C -0.016 4.016 23 C -0.180 4.180 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.453 -14.115 4.210 14.801 hybrid contribution -0.130 1.517 0.367 1.566 sum -1.583 -12.598 4.577 13.497 Atomic orbital electron populations 1.22107 0.94363 1.01712 1.02790 1.19654 0.95542 0.92941 0.95179 1.23317 1.00188 0.92001 0.96297 1.23023 0.99977 0.93623 1.04040 1.18261 0.86432 0.84879 0.83672 1.90629 1.15443 1.85172 1.55323 1.43536 1.02670 1.06200 1.62733 1.19733 1.00659 0.80270 1.43208 0.87284 1.25342 0.96356 1.00699 0.94862 1.69842 1.16590 1.34293 1.30207 0.85908 0.77916 0.81242 0.79591 1.20304 1.20668 1.19121 1.18748 0.84274 1.02368 0.85277 1.29254 0.92630 0.89923 0.95497 1.80862 1.09465 1.13025 1.11704 1.22194 1.02225 0.95528 0.97898 1.22625 0.98404 0.93091 0.87566 1.87909 1.71941 1.56696 1.13877 1.22621 0.98398 0.93056 0.87550 1.22210 1.02239 0.95564 0.98033 0.91824 0.92440 0.91770 0.85995 0.86335 0.91482 0.89665 0.85726 0.90686 0.90461 0.92960 0.89038 0.92937 0.89021 0.90527 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 6.59 37.16 0.24 -1.45 16 2 C -0.03 -0.40 0.74 -155.48 -0.12 -0.52 16 3 C -0.10 -1.55 8.35 -36.09 -0.30 -1.85 16 4 C -0.19 -3.33 8.05 -37.83 -0.30 -3.64 16 5 C 0.48 11.09 7.51 -12.73 -0.10 10.99 16 6 O -0.58 -15.61 15.87 5.22 0.08 -15.53 16 7 N -0.43 -10.20 2.59 -119.34 -0.31 -10.51 16 8 C -0.31 -8.04 9.29 -15.02 -0.14 -8.18 16 9 H 0.11 2.97 7.40 -52.48 -0.39 2.58 16 10 C 0.03 0.78 4.84 -17.45 -0.08 0.70 16 11 N -0.87 -21.86 9.55 55.50 0.53 -21.33 16 12 Si 0.93 19.40 29.61 -169.99 -5.03 14.37 16 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 C 0.22 4.36 4.79 -6.83 -0.03 4.32 16 17 C 0.25 5.39 13.25 -20.78 -0.28 5.12 16 18 N -0.47 -11.13 18.53 42.13 0.78 -10.35 16 19 C -0.14 -1.51 4.91 -26.59 -0.13 -1.64 16 20 C 0.06 0.58 6.57 37.20 0.24 0.82 16 21 O -0.39 -4.46 10.77 -35.23 -0.38 -4.84 16 22 C 0.06 0.62 6.57 37.21 0.24 0.86 16 23 C -0.14 -1.66 4.90 -26.59 -0.13 -1.79 16 24 H 0.06 0.77 7.50 -51.93 -0.39 0.38 16 25 H 0.06 0.55 5.02 -51.93 -0.26 0.29 16 26 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 27 H 0.12 2.15 7.49 -52.49 -0.39 1.75 16 28 H 0.12 1.85 3.93 -52.49 -0.21 1.65 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.09 1.29 6.45 -51.93 -0.34 0.95 16 31 H 0.13 2.48 6.54 -51.93 -0.34 2.14 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.46 6.61 -51.93 -0.34 0.11 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.49 6.60 -51.93 -0.34 0.15 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -31.13 316.81 -5.49 -36.62 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.06 Total: 3.05 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.88 Total: 3.74 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 1.00 Total: -42.18 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.30 Total: -20.37 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.13 -5.49 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442986156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.879 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds