Wall clock time and date at job start Tue Mar 31 2020 01:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50693 * 109.54525 * 2 1 4 4 C 1.33123 * 119.99991 * 359.82598 * 3 2 1 5 5 C 1.46952 * 120.00157 * 179.97438 * 4 3 2 6 6 O 1.21662 * 120.00101 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99936 * 179.97438 * 5 4 3 8 8 C 1.36818 * 120.00185 * 180.02562 * 7 5 4 9 9 H 1.08003 * 119.99939 * 341.38633 * 8 7 5 10 10 C 1.39073 * 120.00414 * 161.11428 * 8 7 5 11 11 N 1.31352 * 119.99783 * 338.21497 * 10 8 7 12 12 Si 1.86800 * 120.00040 * 158.21917 * 10 8 7 13 13 H 1.48500 * 109.47264 * 89.99903 * 12 10 8 14 14 H 1.48503 * 109.47068 * 209.99831 * 12 10 8 15 15 H 1.48498 * 109.47319 * 329.99922 * 12 10 8 16 16 C 1.46499 * 120.00418 * 0.02562 * 7 5 4 17 17 C 1.47204 * 109.47187 * 275.98449 * 16 7 5 18 18 N 5.68339 * 58.32174 * 329.45267 * 2 1 3 19 19 C 1.53182 * 109.61758 * 120.22735 * 2 1 3 20 20 C 1.53087 * 109.16268 * 62.92822 * 19 2 1 21 21 O 1.42905 * 109.41722 * 57.61348 * 20 19 2 22 22 C 1.42905 * 114.09395 * 298.83408 * 21 20 19 23 23 C 1.53093 * 109.41360 * 61.16150 * 22 21 20 24 24 H 1.09000 * 109.47467 * 59.99748 * 1 2 3 25 25 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46829 * 299.99401 * 1 2 3 27 27 H 1.07999 * 120.00077 * 179.82648 * 3 2 1 28 28 H 1.07999 * 119.99931 * 0.02562 * 4 3 2 29 29 H 0.96998 * 119.99589 * 179.97438 * 11 10 8 30 30 H 1.08995 * 109.47005 * 35.97774 * 16 7 5 31 31 H 1.08999 * 109.47683 * 155.98487 * 16 7 5 32 32 H 1.09002 * 109.52193 * 182.83453 * 19 2 1 33 33 H 1.08994 * 109.51710 * 303.01929 * 19 2 1 34 34 H 1.08994 * 109.48248 * 297.62057 * 20 19 2 35 35 H 1.09004 * 109.48712 * 177.59681 * 20 19 2 36 36 H 1.08998 * 109.48510 * 301.17929 * 22 21 20 37 37 H 1.08992 * 109.49083 * 181.14830 * 22 21 20 38 38 H 1.08995 * 109.52752 * 182.48456 * 23 22 21 39 39 H 1.09001 * 109.57605 * 62.32314 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4201 0.0000 4 6 1.1703 2.4331 -0.0035 5 6 1.6619 3.8179 -0.0029 6 8 2.8583 4.0387 0.0003 7 7 0.7874 4.8434 -0.0070 8 6 1.2451 6.1327 -0.0070 9 1 2.2601 6.3455 0.2946 10 6 0.4051 7.1688 -0.4008 11 7 -0.6379 6.9168 -1.1584 12 14 0.7602 8.9189 0.1476 13 1 1.6367 9.5823 -0.8507 14 1 -0.5157 9.6700 0.2628 15 1 1.4417 8.8956 1.4668 16 6 -0.6532 4.5776 -0.0114 17 6 -1.1050 4.3447 -1.3929 18 7 -1.4547 4.1654 -2.4582 19 6 2.0443 -0.7264 1.2467 20 6 1.5931 -2.1885 1.1984 21 8 2.0771 -2.7956 -0.0013 22 6 1.5912 -2.1878 -1.1999 23 6 2.0423 -0.7257 -1.2480 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.0962 1.6161 0.0028 28 1 0.1083 2.2371 -0.0059 29 1 -1.2239 7.6394 -1.4328 30 1 -0.8616 3.6946 0.5926 31 1 -1.1823 5.4352 0.4041 32 1 3.1331 -0.6818 1.2711 33 1 1.6392 -0.2494 2.1391 34 1 0.5042 -2.2336 1.2150 35 1 1.9921 -2.7209 2.0618 36 1 0.5023 -2.2329 -1.2148 37 1 1.9888 -2.7195 -2.0643 38 1 1.6359 -0.2482 -2.1395 39 1 3.1310 -0.6800 -1.2746 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442986156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:13 Heat of formation + Delta-G solvation = -50.991787 kcal Electronic energy + Delta-G solvation = -21844.088604 eV Core-core repulsion = 18558.833182 eV Total energy + Delta-G solvation = -3285.255422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09463 -40.41245 -37.69461 -36.93924 -36.16083 -33.85336 -32.37256 -32.03812 -29.24364 -28.60544 -27.32819 -25.66654 -24.48372 -22.79875 -20.32134 -19.79857 -19.01791 -18.60849 -18.01015 -17.02017 -16.87408 -16.58654 -16.09110 -15.73495 -15.57187 -15.28099 -15.24459 -14.94285 -14.72577 -13.96864 -13.88272 -13.46935 -13.27625 -13.23281 -13.06944 -12.92212 -12.86515 -12.40810 -12.38278 -12.23963 -12.19061 -12.08010 -11.83573 -11.68173 -11.17208 -11.13728 -10.52334 -10.31623 -10.23505 -9.94429 -8.46102 -5.98463 0.54239 1.43069 1.47049 1.59267 1.90454 2.21624 2.34345 2.46858 3.01179 3.02627 3.12305 3.57907 3.67361 3.77242 3.82351 4.10203 4.12952 4.25512 4.30042 4.34637 4.44929 4.58314 4.72001 4.73532 4.77056 4.84122 4.86336 4.98190 5.05249 5.07192 5.18007 5.29600 5.35823 5.43850 5.50005 5.62318 6.06465 6.31845 6.39908 6.98332 7.08641 7.31403 7.91933 8.57768 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031936 B = 0.004206 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.537089 B = 6654.878043 C = 7108.732671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.032 4.032 3 C -0.068 4.068 4 C -0.203 4.203 5 C 0.467 3.533 6 O -0.631 6.631 7 N -0.445 5.445 8 C -0.344 4.344 9 H 0.081 0.919 10 C 0.007 3.993 11 N -0.887 5.887 12 Si 0.988 3.012 13 H -0.286 1.286 14 H -0.267 1.267 15 H -0.264 1.264 16 C 0.221 3.779 17 C 0.257 3.743 18 N -0.503 5.503 19 C -0.139 4.139 20 C 0.059 3.941 21 O -0.402 6.402 22 C 0.063 3.937 23 C -0.144 4.144 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.148 0.852 29 H 0.277 0.723 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -15.444 6.820 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 C -0.089 4.089 4 C -0.224 4.224 5 C 0.260 3.740 6 O -0.520 6.520 7 N -0.162 5.162 8 C -0.472 4.472 9 H 0.099 0.901 10 C -0.196 4.196 11 N -0.525 5.525 12 Si 0.812 3.188 13 H -0.213 1.213 14 H -0.192 1.192 15 H -0.188 1.188 16 C 0.095 3.905 17 C -0.061 4.061 18 N -0.184 5.184 19 C -0.176 4.176 20 C -0.017 4.017 21 O -0.321 6.321 22 C -0.013 4.013 23 C -0.182 4.182 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.165 0.835 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.142 0.858 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.982 -15.599 5.172 16.703 hybrid contribution 0.438 1.901 0.050 1.952 sum -2.544 -13.698 5.222 14.879 Atomic orbital electron populations 1.22122 0.92799 1.03229 1.02823 1.19733 0.96801 0.90267 0.96423 1.23583 0.98923 0.94095 0.92327 1.22847 1.01566 0.90735 1.07214 1.19140 0.85871 0.86833 0.82133 1.90585 1.17653 1.86305 1.57413 1.43685 1.04293 1.05612 1.62621 1.19629 1.00250 0.82109 1.45207 0.90077 1.25968 0.95906 1.03545 0.94145 1.69912 1.17013 1.35283 1.30284 0.85013 0.77999 0.76955 0.78828 1.21264 1.19170 1.18808 1.19089 0.81979 1.04720 0.84737 1.29670 0.91751 0.88888 0.95754 1.80861 1.10562 1.14351 1.12611 1.22192 1.01630 0.96546 0.97277 1.22760 0.99443 0.91957 0.87511 1.87902 1.72495 1.57056 1.14637 1.22672 0.99246 0.91657 0.87756 1.22214 1.01611 0.96897 0.97445 0.92814 0.90255 0.90729 0.88313 0.83465 0.91283 0.84426 0.85781 0.91764 0.89435 0.91322 0.87405 0.91498 0.87857 0.91026 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 6.59 71.98 0.47 -2.41 16 2 C -0.03 -0.72 0.74 -52.81 -0.04 -0.76 16 3 C -0.07 -2.14 8.35 24.53 0.20 -1.93 16 4 C -0.20 -7.12 8.05 23.41 0.19 -6.93 16 5 C 0.47 22.11 7.51 86.53 0.65 22.76 16 6 O -0.63 -35.37 15.87 -4.23 -0.07 -35.44 16 7 N -0.44 -21.11 2.59 -649.71 -1.68 -22.79 16 8 C -0.34 -18.20 9.29 84.12 0.78 -17.42 16 9 H 0.08 4.65 7.40 -2.91 -0.02 4.63 16 10 C 0.01 0.36 4.84 84.96 0.41 0.78 16 11 N -0.89 -44.19 9.55 21.68 0.21 -43.98 16 12 Si 0.99 39.82 29.61 68.60 2.03 41.85 16 13 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 16 C 0.22 8.44 4.79 84.58 0.41 8.85 16 17 C 0.26 11.05 13.25 89.45 1.19 12.23 16 18 N -0.50 -23.47 18.53 20.00 0.37 -23.10 16 19 C -0.14 -2.65 4.91 30.68 0.15 -2.50 16 20 C 0.06 0.95 6.57 72.01 0.47 1.42 16 21 O -0.40 -8.18 10.77 -148.98 -1.60 -9.79 16 22 C 0.06 1.12 6.57 72.01 0.47 1.60 16 23 C -0.14 -3.13 4.90 30.69 0.15 -2.98 16 24 H 0.05 1.14 7.50 -2.39 -0.02 1.13 16 25 H 0.08 1.17 5.02 -2.38 -0.01 1.16 16 26 H 0.07 1.27 7.51 -2.38 -0.02 1.25 16 27 H 0.10 3.57 7.49 -2.91 -0.02 3.55 16 28 H 0.15 4.24 3.93 -2.91 -0.01 4.23 16 29 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 30 H 0.14 3.74 6.45 -2.39 -0.02 3.73 16 31 H 0.12 4.80 6.54 -2.39 -0.02 4.78 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 0.90 6.61 -2.39 -0.02 0.88 16 35 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.01 6.60 -2.39 -0.02 1.00 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -69.06 316.81 5.83 -63.23 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.07 Total: 17.31 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.51 Total: 12.72 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -1.11 Total: -89.87 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.67 Total: -45.23 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -69.06 5.83 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442986156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.235 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds