Wall clock time and date at job start Tue Mar 31 2020 00:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35135 * 125.61301 * 2 1 4 4 C 1.40362 * 107.10939 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.71195 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08992 * 109.46993 * 295.00086 * 10 9 8 12 12 N 1.46506 * 109.46943 * 54.99919 * 10 9 8 13 13 C 1.36929 * 119.99909 * 205.00011 * 12 10 9 14 14 H 1.08006 * 120.00094 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99837 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99700 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46894 * 89.99854 * 17 15 13 19 19 H 1.48503 * 109.47027 * 209.99791 * 17 15 13 20 20 H 1.48497 * 109.47103 * 329.99872 * 17 15 13 21 21 C 1.52995 * 109.47195 * 174.99817 * 10 9 8 22 22 C 1.52999 * 117.50225 * 248.74775 * 21 10 9 23 23 C 1.52999 * 117.49761 * 180.08552 * 21 10 9 24 24 O 1.33922 * 125.61589 * 180.33225 * 2 1 3 25 25 H 1.08994 * 109.47475 * 89.99697 * 1 2 3 26 26 H 1.08999 * 109.47428 * 209.99694 * 1 2 3 27 27 H 1.09002 * 109.46896 * 329.99377 * 1 2 3 28 28 H 1.07993 * 126.44513 * 0.03823 * 3 2 1 29 29 H 1.08007 * 126.64372 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 31 31 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 32 32 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 33 33 H 0.97002 * 119.99781 * 25.00223 * 12 10 9 34 34 H 0.97002 * 120.00092 * 179.97438 * 16 15 13 35 35 H 1.09006 * 115.55266 * 34.42181 * 21 10 9 36 36 H 1.08993 * 117.49781 * 359.97438 * 22 21 10 37 37 H 1.09000 * 117.50138 * 145.02405 * 22 21 10 38 38 H 1.09009 * 117.50018 * 214.98040 * 23 21 10 39 39 H 1.08997 * 117.49907 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 6 5.7168 -3.8429 -0.0107 10 6 5.2361 -5.2955 -0.0164 11 1 4.7122 -5.5085 0.9153 12 7 4.3275 -5.5048 -1.1465 13 6 3.3914 -6.5029 -1.0966 14 1 3.3227 -7.1357 -0.2240 15 6 2.5308 -6.7016 -2.1675 16 7 1.6314 -7.6613 -2.1197 17 14 2.6501 -5.6076 -3.6769 18 1 3.5991 -6.2073 -4.6490 19 1 1.3103 -5.4832 -4.3052 20 1 3.1357 -4.2626 -3.2763 21 6 6.4398 -6.2305 -0.1500 22 6 6.5867 -7.0105 -1.4580 23 6 6.1656 -7.7355 -0.1772 24 8 2.2869 -1.0887 -0.0063 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9612 2.1260 0.0006 29 1 4.5113 1.2704 -0.0011 30 1 3.6609 -3.3123 -0.0029 31 1 6.3164 -3.6552 -0.9015 32 1 6.3212 -3.6638 0.8785 33 1 4.3890 -4.9362 -1.9300 34 1 1.0298 -7.7999 -2.8678 35 1 7.3532 -5.8941 0.3407 36 1 5.8257 -6.8580 -2.2231 37 1 7.5967 -7.1877 -1.8276 38 1 6.8989 -8.3893 0.2952 39 1 5.1278 -8.0595 -0.1003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480002480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:05 Heat of formation + Delta-G solvation = 17.353167 kcal Electronic energy + Delta-G solvation = -21627.504398 eV Core-core repulsion = 18345.212635 eV Total energy + Delta-G solvation = -3282.291763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.70508 -39.34963 -37.74055 -34.72618 -33.46423 -33.16382 -32.08192 -31.16601 -28.96934 -27.06215 -23.84247 -22.80933 -21.87387 -21.62854 -21.33577 -20.13283 -19.34029 -18.38759 -17.40134 -16.49420 -15.83504 -15.56699 -15.28434 -14.84755 -14.44221 -14.27296 -13.66084 -13.39931 -13.36321 -13.10170 -13.00671 -12.94269 -12.80157 -12.50158 -12.03908 -11.62225 -11.23897 -10.99462 -10.83080 -10.60599 -10.25499 -10.18454 -10.06721 -9.59313 -9.56261 -9.24653 -9.05046 -8.94456 -8.46562 -7.40165 -5.85505 -3.22497 1.07604 2.27936 2.62727 3.29418 3.31445 3.35681 3.38771 3.41826 4.50167 4.51661 4.54003 4.85336 4.88787 5.17911 5.18470 5.26408 5.28153 5.41143 5.48165 5.59128 5.65130 5.72467 5.76792 5.82148 5.89235 5.92927 5.96593 6.24464 6.31958 6.36077 6.50030 6.58284 6.69614 6.88206 6.99363 7.12397 7.70458 7.89958 8.25118 8.32735 9.10009 9.82363 10.01212 11.32070 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.005860 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.841025 B = 4777.259216 C = 6078.184726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.019 3.981 3 C -0.228 4.228 4 C -0.123 4.123 5 C -0.075 4.075 6 C 0.598 3.402 7 O -0.533 6.533 8 N -0.704 5.704 9 C 0.114 3.886 10 C 0.197 3.803 11 H 0.067 0.933 12 N -0.743 5.743 13 C -0.244 4.244 14 H 0.094 0.906 15 C 0.011 3.989 16 N -0.929 5.929 17 Si 0.877 3.123 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.178 4.178 22 C -0.165 4.165 23 C -0.169 4.169 24 O -0.156 6.156 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.415 0.585 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.363 0.637 34 H 0.260 0.740 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 13.707 5.077 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C -0.247 4.247 4 C -0.144 4.144 5 C -0.127 4.127 6 C 0.384 3.616 7 O -0.413 6.413 8 N -0.354 5.354 9 C -0.010 4.010 10 C 0.087 3.913 11 H 0.085 0.915 12 N -0.386 5.386 13 C -0.374 4.374 14 H 0.111 0.889 15 C -0.185 4.185 16 N -0.576 5.576 17 Si 0.707 3.293 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.200 4.200 22 C -0.202 4.202 23 C -0.206 4.206 24 O -0.052 6.052 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.252 0.748 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.262 13.473 5.145 14.599 hybrid contribution -0.290 0.669 -1.269 1.464 sum 1.972 14.143 3.876 14.796 Atomic orbital electron populations 1.20426 0.84643 1.04491 1.04077 1.22851 0.94390 0.84137 1.01989 1.21544 0.92364 0.99635 1.11157 1.21891 0.98500 0.92904 1.01115 1.22145 0.82027 0.94665 1.13858 1.16569 0.85915 0.81815 0.77315 1.90844 1.22032 1.76410 1.52007 1.45961 1.11997 1.04919 1.72556 1.21741 0.87466 0.89587 1.02170 1.19969 0.89495 0.89138 0.92686 0.91495 1.42855 1.39270 1.39514 1.17001 1.19003 1.07877 1.07512 1.02982 0.88859 1.24626 0.98009 0.98072 0.97787 1.69685 1.22700 1.33129 1.32076 0.86679 0.77095 0.80890 0.84616 1.21058 1.21809 1.20325 1.22991 0.99877 0.94357 1.02747 1.22847 1.00973 1.04065 0.92351 1.22903 1.03002 0.93195 1.01530 1.84077 1.15965 1.34820 1.70315 0.89538 0.89880 0.89066 0.82816 0.82384 0.74786 0.91296 0.90944 0.80355 0.93002 0.89243 0.87225 0.91034 0.90814 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.41 36.01 0.37 -0.28 16 2 C 0.02 0.23 7.31 -35.41 -0.26 -0.03 16 3 C -0.23 -2.61 10.77 -39.89 -0.43 -3.04 16 4 C -0.12 -1.68 10.62 -39.39 -0.42 -2.09 16 5 C -0.07 -1.18 7.13 -36.80 -0.26 -1.44 16 6 C 0.60 10.33 7.79 -12.86 -0.10 10.23 16 7 O -0.53 -10.21 16.86 5.20 0.09 -10.12 16 8 N -0.70 -11.81 5.38 -61.62 -0.33 -12.14 16 9 C 0.11 1.85 5.21 -4.04 -0.02 1.82 16 10 C 0.20 3.49 2.86 -67.93 -0.19 3.29 16 11 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 12 N -0.74 -15.78 2.88 -53.42 -0.15 -15.93 16 13 C -0.24 -6.21 8.64 -15.06 -0.13 -6.34 16 14 H 0.09 2.56 7.14 -52.48 -0.37 2.19 16 15 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 16 N -0.93 -27.71 13.97 55.49 0.78 -26.93 16 17 Si 0.88 21.32 27.74 -169.99 -4.71 16.60 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 21 C -0.18 -2.97 5.70 -90.62 -0.52 -3.48 16 22 C -0.17 -2.96 9.74 -26.69 -0.26 -3.22 16 23 C -0.17 -3.00 9.87 -26.69 -0.26 -3.26 16 24 O -0.16 -2.39 10.40 5.02 0.05 -2.34 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 29 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 30 H 0.42 7.19 7.89 -40.82 -0.32 6.87 16 31 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.36 7.94 5.66 -40.82 -0.23 7.71 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.11 2.29 6.68 -51.93 -0.35 1.95 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 39 H 0.11 2.26 6.22 -51.93 -0.32 1.93 16 LS Contribution 330.74 15.07 4.98 4.98 Total: -1.00 -30.55 330.74 -7.29 -37.84 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -5.41 Total: 15.67 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.58 Total: -7.62 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.29 Total: -55.01 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.14 Total: -12.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.55 -7.29 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480002480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.192 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds