Wall clock time and date at job start Tue Mar 31 2020 00:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35135 * 125.61301 * 2 1 4 4 C 1.40362 * 107.10939 * 180.02562 * 3 2 1 5 5 C 1.36545 * 106.71195 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98797 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99639 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08992 * 109.46993 * 295.00086 * 10 9 8 12 12 N 1.46506 * 109.46943 * 54.99919 * 10 9 8 13 13 C 1.36929 * 119.99909 * 205.00011 * 12 10 9 14 14 H 1.08006 * 120.00094 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00176 * 180.02562 * 13 12 10 16 16 N 1.31618 * 119.99837 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99700 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46894 * 89.99854 * 17 15 13 19 19 H 1.48503 * 109.47027 * 209.99791 * 17 15 13 20 20 H 1.48497 * 109.47103 * 329.99872 * 17 15 13 21 21 C 1.52995 * 109.47195 * 174.99817 * 10 9 8 22 22 C 1.52999 * 117.50225 * 248.74775 * 21 10 9 23 23 C 1.52999 * 117.49761 * 180.08552 * 21 10 9 24 24 O 1.33922 * 125.61589 * 180.33225 * 2 1 3 25 25 H 1.08994 * 109.47475 * 89.99697 * 1 2 3 26 26 H 1.08999 * 109.47428 * 209.99694 * 1 2 3 27 27 H 1.09002 * 109.46896 * 329.99377 * 1 2 3 28 28 H 1.07993 * 126.44513 * 0.03823 * 3 2 1 29 29 H 1.08007 * 126.64372 * 179.97438 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 31 31 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 32 32 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 33 33 H 0.97002 * 119.99781 * 25.00223 * 12 10 9 34 34 H 0.97002 * 120.00092 * 179.97438 * 16 15 13 35 35 H 1.09006 * 115.55266 * 34.42181 * 21 10 9 36 36 H 1.08993 * 117.49781 * 359.97438 * 22 21 10 37 37 H 1.09000 * 117.50138 * 145.02405 * 22 21 10 38 38 H 1.09009 * 117.50018 * 214.98040 * 23 21 10 39 39 H 1.08997 * 117.49907 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0029 7 8 5.8680 -1.1499 -0.0038 8 7 4.5589 -2.9455 -0.0032 9 6 5.7168 -3.8429 -0.0107 10 6 5.2361 -5.2955 -0.0164 11 1 4.7122 -5.5085 0.9153 12 7 4.3275 -5.5048 -1.1465 13 6 3.3914 -6.5029 -1.0966 14 1 3.3227 -7.1357 -0.2240 15 6 2.5308 -6.7016 -2.1675 16 7 1.6314 -7.6613 -2.1197 17 14 2.6501 -5.6076 -3.6769 18 1 3.5991 -6.2073 -4.6490 19 1 1.3103 -5.4832 -4.3052 20 1 3.1357 -4.2626 -3.2763 21 6 6.4398 -6.2305 -0.1500 22 6 6.5867 -7.0105 -1.4580 23 6 6.1656 -7.7355 -0.1772 24 8 2.2869 -1.0887 -0.0063 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9612 2.1260 0.0006 29 1 4.5113 1.2704 -0.0011 30 1 3.6609 -3.3123 -0.0029 31 1 6.3164 -3.6552 -0.9015 32 1 6.3212 -3.6638 0.8785 33 1 4.3890 -4.9362 -1.9300 34 1 1.0298 -7.7999 -2.8678 35 1 7.3532 -5.8941 0.3407 36 1 5.8257 -6.8580 -2.2231 37 1 7.5967 -7.1877 -1.8276 38 1 6.8989 -8.3893 0.2952 39 1 5.1278 -8.0595 -0.1003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480002480.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:03 Heat of formation + Delta-G solvation = -2.472167 kcal Electronic energy + Delta-G solvation = -21628.364089 eV Core-core repulsion = 18345.212635 eV Total energy + Delta-G solvation = -3283.151454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.72879 -40.69388 -39.23947 -36.09545 -35.18119 -34.27253 -33.17885 -32.81663 -30.48377 -28.11858 -25.42566 -24.41961 -23.18329 -22.75775 -22.55892 -21.33394 -20.78875 -19.92459 -19.05339 -17.58574 -17.19370 -16.93974 -16.58331 -16.32401 -15.98977 -15.72271 -15.13543 -14.78469 -14.57770 -14.31919 -14.10083 -14.04989 -13.95349 -13.75798 -13.17759 -12.98847 -12.80715 -12.67993 -12.54345 -12.16262 -12.06919 -11.65975 -11.53025 -11.10264 -11.06315 -10.90174 -10.66858 -10.27060 -9.48380 -9.34805 -7.99135 -5.31682 -0.02906 1.32759 1.35864 1.37412 1.42968 1.60518 2.06370 2.17783 2.47317 3.07094 3.33849 3.55487 3.62073 3.81807 3.89885 3.94173 4.22745 4.28962 4.43890 4.49991 4.52395 4.57398 4.61909 4.69038 4.71355 4.81811 4.91871 4.97182 5.11036 5.11659 5.15343 5.31889 5.45607 5.49476 5.61676 5.85295 5.85816 6.23587 6.38795 6.93367 7.08978 7.83116 8.01504 9.22004 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.005860 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.841025 B = 4777.259216 C = 6078.184726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.017 3.983 3 C -0.225 4.225 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.598 3.402 7 O -0.559 6.559 8 N -0.707 5.707 9 C 0.123 3.877 10 C 0.195 3.805 11 H 0.062 0.938 12 N -0.741 5.741 13 C -0.206 4.206 14 H 0.067 0.933 15 C -0.053 4.053 16 N -0.980 5.980 17 Si 0.937 3.063 18 H -0.286 1.286 19 H -0.301 1.301 20 H -0.261 1.261 21 C -0.163 4.163 22 C -0.171 4.171 23 C -0.175 4.175 24 O -0.179 6.179 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.190 0.810 29 H 0.169 0.831 30 H 0.411 0.589 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.363 0.637 34 H 0.255 0.745 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 16.092 5.433 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 C -0.244 4.244 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.386 3.614 7 O -0.441 6.441 8 N -0.356 5.356 9 C -0.001 4.001 10 C 0.087 3.913 11 H 0.080 0.920 12 N -0.384 5.384 13 C -0.337 4.337 14 H 0.085 0.915 15 C -0.244 4.244 16 N -0.631 5.631 17 Si 0.767 3.233 18 H -0.213 1.213 19 H -0.228 1.228 20 H -0.186 1.186 21 C -0.184 4.184 22 C -0.208 4.208 23 C -0.212 4.212 24 O -0.076 6.076 25 H 0.115 0.885 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.207 0.793 29 H 0.186 0.814 30 H 0.248 0.752 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.196 0.804 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.193 15.890 5.526 17.124 hybrid contribution -0.583 -0.032 -1.267 1.396 sum 2.609 15.858 4.259 16.626 Atomic orbital electron populations 1.20671 0.81906 1.05945 1.05160 1.23763 0.95965 0.83670 1.00156 1.21948 0.91052 1.01135 1.10243 1.22231 1.00031 0.92223 0.99117 1.21983 0.82076 0.95194 1.17489 1.16744 0.86226 0.81846 0.76581 1.90811 1.23067 1.76770 1.53419 1.45979 1.11851 1.05115 1.72655 1.21686 0.87382 0.87954 1.03077 1.20127 0.89383 0.90820 0.90979 0.91982 1.42799 1.39180 1.38351 1.18114 1.18896 1.07056 1.06571 1.01148 0.91514 1.25220 0.98624 0.99849 1.00755 1.69839 1.24531 1.35748 1.32943 0.85683 0.76296 0.80001 0.81329 1.21261 1.22836 1.18593 1.22982 1.00311 0.93160 1.01939 1.22803 1.01425 1.04803 0.91808 1.22826 1.01617 0.94606 1.02143 1.84056 1.16063 1.36434 1.71051 0.88467 0.90145 0.85897 0.79303 0.81390 0.75245 0.91394 0.88918 0.80386 0.93638 0.85673 0.90590 0.88305 0.87988 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.41 71.24 0.74 -0.35 16 2 C 0.02 0.37 7.31 24.97 0.18 0.56 16 3 C -0.23 -4.51 10.77 22.07 0.24 -4.27 16 4 C -0.12 -2.94 10.62 22.39 0.24 -2.70 16 5 C -0.12 -3.59 7.13 24.07 0.17 -3.41 16 6 C 0.60 20.35 7.79 86.44 0.67 21.02 16 7 O -0.56 -20.98 16.86 -4.33 -0.07 -21.05 16 8 N -0.71 -23.25 5.38 -467.09 -2.51 -25.77 16 9 C 0.12 3.75 5.21 86.38 0.45 4.20 16 10 C 0.20 6.70 2.86 44.99 0.13 6.83 16 11 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 12 N -0.74 -31.34 2.88 -322.94 -0.93 -32.27 16 13 C -0.21 -10.69 8.64 84.04 0.73 -9.97 16 14 H 0.07 3.82 7.14 -2.91 -0.02 3.80 16 15 C -0.05 -2.96 5.50 84.86 0.47 -2.50 16 16 N -0.98 -60.55 13.97 21.65 0.30 -60.25 16 17 Si 0.94 44.91 27.74 68.60 1.90 46.81 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 19 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 20 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 21 C -0.16 -5.06 5.70 -10.80 -0.06 -5.12 16 22 C -0.17 -5.87 9.74 30.62 0.30 -5.57 16 23 C -0.17 -6.00 9.87 30.62 0.30 -5.69 16 24 O -0.18 -5.37 10.40 -4.96 -0.05 -5.42 16 25 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 30 H 0.41 14.20 7.89 -92.71 -0.73 13.47 16 31 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 33 H 0.36 15.60 5.66 -92.71 -0.52 15.07 16 34 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.13 3.10 8.11 -2.38 -0.02 3.08 16 36 H 0.08 3.16 6.68 -2.39 -0.02 3.14 16 37 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 39 H 0.07 3.00 6.22 -2.39 -0.01 2.99 16 Total: -1.00 -68.14 330.74 2.95 -65.19 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: -0.24 Total: 39.72 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 4.56 Total: -6.97 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.14 Total: -118.29 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.12 Total: -26.47 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -68.14 2.95 -65.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480002480.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.720 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds