Wall clock time and date at job start Tue Mar 31 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35129 * 125.61287 * 2 1 4 4 C 1.40370 * 107.11512 * 180.02562 * 3 2 1 5 5 C 1.36549 * 106.70135 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98219 * 179.97438 * 5 4 3 7 7 O 1.21691 * 120.00091 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00098 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00236 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47189 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.46955 * 65.00107 * 10 9 8 12 12 N 1.46500 * 109.46998 * 304.99881 * 10 9 8 13 13 C 1.36933 * 120.00119 * 155.00213 * 12 10 9 14 14 H 1.08000 * 120.00220 * 359.97438 * 13 12 10 15 15 C 1.38815 * 120.00205 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99778 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00162 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47222 * 59.99875 * 17 15 13 19 19 H 1.48498 * 109.47193 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47239 * 299.99802 * 17 15 13 21 21 C 1.52997 * 109.47127 * 185.00095 * 10 9 8 22 22 C 1.52998 * 117.49757 * 248.74651 * 21 10 9 23 23 C 1.53003 * 117.49978 * 180.08465 * 21 10 9 24 24 O 1.33923 * 125.61869 * 180.32173 * 2 1 3 25 25 H 1.08997 * 109.47370 * 90.00138 * 1 2 3 26 26 H 1.09002 * 109.47087 * 210.00092 * 1 2 3 27 27 H 1.09004 * 109.47453 * 330.00558 * 1 2 3 28 28 H 1.07999 * 126.44884 * 0.03099 * 3 2 1 29 29 H 1.07990 * 126.64789 * 179.97438 * 4 3 2 30 30 H 0.97005 * 119.99768 * 0.02562 * 8 6 5 31 31 H 1.08997 * 109.47341 * 59.99745 * 9 8 6 32 32 H 1.09004 * 109.47562 * 299.99900 * 9 8 6 33 33 H 0.97002 * 120.00030 * 335.00116 * 12 10 9 34 34 H 0.96997 * 120.00103 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.55272 * 34.41351 * 21 10 9 36 36 H 1.09004 * 117.50171 * 359.97438 * 22 21 10 37 37 H 1.09001 * 117.50114 * 145.02267 * 22 21 10 38 38 H 1.08997 * 117.49922 * 214.97679 * 23 21 10 39 39 H 1.08996 * 117.49497 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5822 -0.7116 -0.0004 6 6 4.7414 -1.6101 -0.0013 7 8 5.8679 -1.1499 -0.0029 8 7 4.5590 -2.9454 -0.0004 9 6 5.7168 -3.8429 -0.0008 10 6 5.2362 -5.2955 -0.0003 11 1 4.7093 -5.5042 -0.9313 12 7 4.3313 -5.5100 1.1317 13 6 3.3951 -6.5080 1.0803 14 1 3.3235 -7.1367 0.2051 15 6 2.5373 -6.7109 2.1526 16 7 2.6241 -5.9443 3.2190 17 14 1.2597 -8.0718 2.0822 18 1 1.9400 -9.3811 1.9142 19 1 0.4746 -8.0794 3.3427 20 1 0.3485 -7.8364 0.9335 21 6 6.4403 -6.2310 0.1250 22 6 6.7995 -7.0869 -1.0912 23 6 6.1667 -7.7363 0.1421 24 8 2.2869 -1.0887 -0.0061 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9612 2.1261 0.0005 29 1 4.5112 1.2704 -0.0011 30 1 3.6610 -3.3122 0.0005 31 1 6.3195 -3.6588 0.8885 32 1 6.3182 -3.6599 -0.8914 33 1 4.3953 -4.9450 1.9176 34 1 2.0245 -6.0858 3.9682 35 1 7.2607 -5.8616 0.7404 36 1 6.1777 -6.9838 -1.9806 37 1 7.8561 -7.2810 -1.2758 38 1 6.8072 -8.3572 0.7684 39 1 5.1288 -8.0600 0.0645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480002481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:09 Heat of formation + Delta-G solvation = 10.238807 kcal Electronic energy + Delta-G solvation = -21406.502055 eV Core-core repulsion = 18123.901791 eV Total energy + Delta-G solvation = -3282.600265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.60018 -39.20169 -37.52470 -34.74668 -33.52496 -33.10187 -31.98567 -30.93987 -28.47622 -26.85685 -23.88848 -22.81194 -21.74064 -21.59929 -21.34766 -20.09921 -19.57613 -18.17941 -17.13449 -16.37987 -15.71599 -15.39636 -15.15666 -14.75286 -14.41927 -14.02755 -13.71862 -13.31479 -13.27961 -13.09065 -13.03443 -12.89595 -12.79336 -12.11769 -11.95134 -11.39164 -11.17955 -10.88885 -10.86174 -10.73513 -10.17119 -10.09191 -9.96673 -9.93183 -9.54097 -9.31618 -8.98970 -8.81156 -8.35490 -7.06249 -5.82062 -3.11959 1.18758 2.37563 2.73665 3.38814 3.41549 3.44239 3.45100 3.53368 4.40231 4.58416 4.63283 4.94771 4.99534 5.20352 5.27319 5.32152 5.45428 5.50344 5.55780 5.59672 5.69161 5.72678 5.84179 5.88651 5.97369 6.02442 6.05827 6.16175 6.36766 6.41583 6.52618 6.57301 6.74084 6.80196 6.96290 6.99573 7.63471 7.84868 8.34173 8.39140 9.46496 10.00294 10.36391 11.39638 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.005591 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.490770 B = 5006.602221 C = 6721.996435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 C -0.228 4.228 4 C -0.126 4.126 5 C -0.070 4.070 6 C 0.598 3.402 7 O -0.536 6.536 8 N -0.699 5.699 9 C 0.117 3.883 10 C 0.192 3.808 11 H 0.056 0.944 12 N -0.717 5.717 13 C -0.239 4.239 14 H 0.070 0.930 15 C -0.008 4.008 16 N -0.928 5.928 17 Si 0.903 3.097 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.286 1.286 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.155 4.155 24 O -0.155 6.155 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.416 0.584 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 9.724 -7.991 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 C -0.247 4.247 4 C -0.147 4.147 5 C -0.123 4.123 6 C 0.384 3.616 7 O -0.416 6.416 8 N -0.349 5.349 9 C -0.007 4.007 10 C 0.082 3.918 11 H 0.074 0.926 12 N -0.357 5.357 13 C -0.370 4.370 14 H 0.088 0.912 15 C -0.205 4.205 16 N -0.576 5.576 17 Si 0.734 3.266 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.181 4.181 22 C -0.234 4.234 23 C -0.193 4.193 24 O -0.050 6.050 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.253 0.747 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.035 9.560 -8.006 12.470 hybrid contribution -0.964 -0.663 0.459 1.257 sum -0.929 8.897 -7.548 11.704 Atomic orbital electron populations 1.20410 0.84768 1.04607 1.03792 1.22812 0.94348 0.84175 1.02175 1.21531 0.92403 0.99573 1.11219 1.21875 0.98444 0.92935 1.01418 1.22156 0.82027 0.94634 1.13455 1.16560 0.85867 0.81855 0.77359 1.90836 1.22059 1.76447 1.52237 1.45913 1.12001 1.04810 1.72207 1.21696 0.87446 0.89611 1.01930 1.20061 0.89428 0.89212 0.93126 0.92607 1.42444 1.37294 1.39346 1.16663 1.19103 1.08616 1.08536 1.00716 0.91174 1.24722 0.99914 0.99362 0.96504 1.69651 1.40723 1.40713 1.06499 0.86336 0.81554 0.81981 0.76689 1.21253 1.21760 1.21313 1.23018 1.00661 0.94282 1.00122 1.22967 1.00235 1.07240 0.92951 1.22781 1.02160 0.95239 0.99083 1.84083 1.15965 1.34741 1.70202 0.89733 0.89832 0.89131 0.82912 0.82447 0.74711 0.91371 0.91224 0.78022 0.93426 0.89066 0.89536 0.90057 0.90205 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.41 36.00 0.37 -0.32 16 2 C 0.02 0.23 7.31 -35.42 -0.26 -0.03 16 3 C -0.23 -2.76 10.77 -39.89 -0.43 -3.19 16 4 C -0.13 -1.80 10.62 -39.39 -0.42 -2.22 16 5 C -0.07 -1.17 7.13 -36.79 -0.26 -1.43 16 6 C 0.60 10.87 7.79 -12.86 -0.10 10.77 16 7 O -0.54 -10.74 16.86 5.20 0.09 -10.66 16 8 N -0.70 -12.45 5.38 -61.63 -0.33 -12.78 16 9 C 0.12 2.03 5.22 -4.04 -0.02 2.01 16 10 C 0.19 3.59 2.70 -67.93 -0.18 3.41 16 11 H 0.06 1.05 7.84 -51.93 -0.41 0.65 16 12 N -0.72 -16.51 4.54 -53.43 -0.24 -16.75 16 13 C -0.24 -6.10 8.63 -15.06 -0.13 -6.23 16 14 H 0.07 1.75 6.91 -52.49 -0.36 1.38 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -26.91 13.06 55.49 0.72 -26.19 16 17 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 C -0.16 -2.76 5.36 -90.62 -0.49 -3.25 16 22 C -0.20 -2.96 10.18 -26.69 -0.27 -3.23 16 23 C -0.16 -2.75 9.78 -26.69 -0.26 -3.01 16 24 O -0.15 -2.48 10.40 5.04 0.05 -2.43 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 30 H 0.42 7.70 7.89 -40.82 -0.32 7.38 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.39 9.78 7.80 -40.82 -0.32 9.46 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 36 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.10 2.08 6.23 -51.93 -0.32 1.75 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -30.08 336.76 -7.71 -37.80 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -5.51 Total: 16.45 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.54 Total: -7.04 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.15 Total: -55.72 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.14 Total: -13.09 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.08 -7.71 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480002481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.038 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds