Wall clock time and date at job start Tue Mar 31 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35129 * 125.61287 * 2 1 4 4 C 1.40370 * 107.11512 * 180.02562 * 3 2 1 5 5 C 1.36549 * 106.70135 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98219 * 179.97438 * 5 4 3 7 7 O 1.21691 * 120.00091 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00098 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00236 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47189 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.46955 * 65.00107 * 10 9 8 12 12 N 1.46500 * 109.46998 * 304.99881 * 10 9 8 13 13 C 1.36933 * 120.00119 * 155.00213 * 12 10 9 14 14 H 1.08000 * 120.00220 * 359.97438 * 13 12 10 15 15 C 1.38815 * 120.00205 * 180.02562 * 13 12 10 16 16 N 1.31619 * 119.99778 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00162 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47222 * 59.99875 * 17 15 13 19 19 H 1.48498 * 109.47193 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47239 * 299.99802 * 17 15 13 21 21 C 1.52997 * 109.47127 * 185.00095 * 10 9 8 22 22 C 1.52998 * 117.49757 * 248.74651 * 21 10 9 23 23 C 1.53003 * 117.49978 * 180.08465 * 21 10 9 24 24 O 1.33923 * 125.61869 * 180.32173 * 2 1 3 25 25 H 1.08997 * 109.47370 * 90.00138 * 1 2 3 26 26 H 1.09002 * 109.47087 * 210.00092 * 1 2 3 27 27 H 1.09004 * 109.47453 * 330.00558 * 1 2 3 28 28 H 1.07999 * 126.44884 * 0.03099 * 3 2 1 29 29 H 1.07990 * 126.64789 * 179.97438 * 4 3 2 30 30 H 0.97005 * 119.99768 * 0.02562 * 8 6 5 31 31 H 1.08997 * 109.47341 * 59.99745 * 9 8 6 32 32 H 1.09004 * 109.47562 * 299.99900 * 9 8 6 33 33 H 0.97002 * 120.00030 * 335.00116 * 12 10 9 34 34 H 0.96997 * 120.00103 * 179.97438 * 16 15 13 35 35 H 1.09001 * 115.55272 * 34.41351 * 21 10 9 36 36 H 1.09004 * 117.50171 * 359.97438 * 22 21 10 37 37 H 1.09001 * 117.50114 * 145.02267 * 22 21 10 38 38 H 1.08997 * 117.49922 * 214.97679 * 23 21 10 39 39 H 1.08996 * 117.49497 * 359.97438 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5822 -0.7116 -0.0004 6 6 4.7414 -1.6101 -0.0013 7 8 5.8679 -1.1499 -0.0029 8 7 4.5590 -2.9454 -0.0004 9 6 5.7168 -3.8429 -0.0008 10 6 5.2362 -5.2955 -0.0003 11 1 4.7093 -5.5042 -0.9313 12 7 4.3313 -5.5100 1.1317 13 6 3.3951 -6.5080 1.0803 14 1 3.3235 -7.1367 0.2051 15 6 2.5373 -6.7109 2.1526 16 7 2.6241 -5.9443 3.2190 17 14 1.2597 -8.0718 2.0822 18 1 1.9400 -9.3811 1.9142 19 1 0.4746 -8.0794 3.3427 20 1 0.3485 -7.8364 0.9335 21 6 6.4403 -6.2310 0.1250 22 6 6.7995 -7.0869 -1.0912 23 6 6.1667 -7.7363 0.1421 24 8 2.2869 -1.0887 -0.0061 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.9612 2.1261 0.0005 29 1 4.5112 1.2704 -0.0011 30 1 3.6610 -3.3122 0.0005 31 1 6.3195 -3.6588 0.8885 32 1 6.3182 -3.6599 -0.8914 33 1 4.3953 -4.9450 1.9176 34 1 2.0245 -6.0858 3.9682 35 1 7.2607 -5.8616 0.7404 36 1 6.1777 -6.9838 -1.9806 37 1 7.8561 -7.2810 -1.2758 38 1 6.8072 -8.3572 0.7684 39 1 5.1288 -8.0600 0.0645 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480002481.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:09 Heat of formation + Delta-G solvation = -9.072373 kcal Electronic energy + Delta-G solvation = -21407.339451 eV Core-core repulsion = 18123.901791 eV Total energy + Delta-G solvation = -3283.437660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.69909 -40.62896 -39.00652 -36.19455 -35.24714 -34.23898 -33.07139 -32.60585 -30.03774 -28.01814 -25.63961 -24.29991 -23.03458 -22.78584 -22.55170 -21.44664 -20.92866 -19.63433 -18.92261 -17.54472 -17.16203 -16.82962 -16.54042 -16.12376 -15.99581 -15.49907 -15.25251 -14.90920 -14.62468 -14.07476 -14.03337 -13.92644 -13.82668 -13.63623 -12.97324 -12.92929 -12.78793 -12.67865 -12.44145 -12.26898 -12.03732 -11.74605 -11.51198 -11.03582 -11.00447 -10.90268 -10.77472 -10.23114 -9.45246 -9.01137 -7.88937 -5.17066 0.00278 1.35357 1.49022 1.50222 1.55832 1.64049 2.09104 2.22314 2.57467 3.07741 3.47106 3.62259 3.75680 3.91063 3.96198 3.98142 4.17148 4.32751 4.38620 4.51279 4.54551 4.60996 4.64960 4.71581 4.73231 4.81398 4.90811 4.94207 5.10406 5.12923 5.16127 5.35841 5.40915 5.47596 5.48758 5.60839 5.89056 6.30012 6.43147 6.97071 7.38125 8.08714 8.34292 9.33748 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.005591 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.490770 B = 5006.602221 C = 6721.996435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.016 3.984 3 C -0.225 4.225 4 C -0.117 4.117 5 C -0.114 4.114 6 C 0.597 3.403 7 O -0.563 6.563 8 N -0.701 5.701 9 C 0.125 3.875 10 C 0.196 3.804 11 H 0.057 0.943 12 N -0.724 5.724 13 C -0.221 4.221 14 H 0.077 0.923 15 C -0.071 4.071 16 N -0.967 5.967 17 Si 0.962 3.038 18 H -0.281 1.281 19 H -0.302 1.302 20 H -0.279 1.279 21 C -0.173 4.173 22 C -0.161 4.161 23 C -0.174 4.174 24 O -0.178 6.178 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.191 0.809 29 H 0.168 0.832 30 H 0.411 0.589 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.372 0.628 34 H 0.247 0.753 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 10.415 -9.576 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 C -0.244 4.244 4 C -0.138 4.138 5 C -0.165 4.165 6 C 0.384 3.616 7 O -0.445 6.445 8 N -0.350 5.350 9 C 0.001 3.999 10 C 0.087 3.913 11 H 0.075 0.925 12 N -0.363 5.363 13 C -0.352 4.352 14 H 0.095 0.905 15 C -0.263 4.263 16 N -0.618 5.618 17 Si 0.792 3.208 18 H -0.208 1.208 19 H -0.229 1.229 20 H -0.205 1.205 21 C -0.194 4.194 22 C -0.198 4.198 23 C -0.211 4.211 24 O -0.075 6.075 25 H 0.123 0.877 26 H 0.094 0.906 27 H 0.138 0.862 28 H 0.208 0.792 29 H 0.186 0.814 30 H 0.247 0.753 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.204 0.796 34 H 0.056 0.944 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.316 10.235 -9.649 14.070 hybrid contribution -0.853 -0.800 0.869 1.457 sum -1.169 9.435 -8.780 12.941 Atomic orbital electron populations 1.20662 0.81836 1.05662 1.05384 1.23776 0.96017 0.83661 1.00154 1.21943 0.90982 1.01142 1.10325 1.22223 1.00069 0.92169 0.99291 1.21956 0.82065 0.95162 1.17350 1.16783 0.86272 0.81908 0.76592 1.90798 1.23170 1.76821 1.53713 1.45918 1.11750 1.05022 1.72290 1.21633 0.87354 0.88616 1.02276 1.20167 0.89327 0.90412 0.91389 0.92474 1.42554 1.37928 1.38574 1.17290 1.19419 1.07790 1.07838 1.00175 0.90492 1.25396 1.02396 1.01815 0.96710 1.69810 1.41972 1.42827 1.07215 0.85389 0.79468 0.79779 0.76185 1.20787 1.22854 1.20490 1.22895 1.00226 0.93721 1.02576 1.23041 1.01707 1.03264 0.91797 1.22734 1.01300 0.95360 1.01703 1.84060 1.16037 1.36445 1.70965 0.87718 0.90615 0.86176 0.79225 0.81446 0.75255 0.92359 0.89410 0.79633 0.94388 0.88593 0.88614 0.87370 0.89526 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.41 71.24 0.74 -0.43 16 2 C 0.02 0.39 7.31 24.97 0.18 0.57 16 3 C -0.23 -4.91 10.77 22.07 0.24 -4.67 16 4 C -0.12 -3.23 10.62 22.39 0.24 -2.99 16 5 C -0.11 -3.82 7.13 24.08 0.17 -3.65 16 6 C 0.60 22.23 7.79 86.44 0.67 22.90 16 7 O -0.56 -22.96 16.86 -4.32 -0.07 -23.03 16 8 N -0.70 -25.55 5.38 -467.11 -2.51 -28.07 16 9 C 0.13 4.33 5.22 86.38 0.45 4.78 16 10 C 0.20 7.25 2.70 44.99 0.12 7.37 16 11 H 0.06 2.11 7.84 -2.39 -0.02 2.09 16 12 N -0.72 -33.86 4.54 -322.94 -1.47 -35.33 16 13 C -0.22 -11.34 8.63 84.03 0.73 -10.61 16 14 H 0.08 3.80 6.91 -2.91 -0.02 3.78 16 15 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 16 N -0.97 -57.64 13.06 21.65 0.28 -57.36 16 17 Si 0.96 44.85 29.55 68.60 2.03 46.88 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 19 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 C -0.17 -5.78 5.36 -10.79 -0.06 -5.84 16 22 C -0.16 -4.39 10.18 30.62 0.31 -4.08 16 23 C -0.17 -5.93 9.78 30.62 0.30 -5.63 16 24 O -0.18 -5.76 10.40 -4.90 -0.05 -5.81 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.17 4.15 8.06 -2.92 -0.02 4.13 16 30 H 0.41 15.75 7.89 -92.70 -0.73 15.02 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.37 19.44 7.80 -92.71 -0.72 18.72 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.10 3.13 8.11 -2.39 -0.02 3.12 16 36 H 0.10 2.47 8.05 -2.38 -0.02 2.45 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.08 3.14 6.23 -2.39 -0.01 3.12 16 Total: -1.00 -66.13 336.76 2.39 -63.75 By element: Atomic # 1 Polarization: 45.06 SS G_CDS: -0.38 Total: 44.68 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.56 Total: -5.70 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -3.70 Total: -120.75 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.12 Total: -28.85 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.13 2.39 -63.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480002481.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.674 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds