Wall clock time and date at job start Tue Mar 31 2020 00:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34178 * 125.43452 * 2 1 4 4 C 1.47022 * 105.95130 * 179.97438 * 3 2 1 5 5 C 1.47389 * 127.19157 * 180.02562 * 4 3 2 6 6 O 1.21607 * 119.99703 * 179.97438 * 5 4 3 7 7 N 1.34772 * 119.99808 * 359.96971 * 5 4 3 8 8 C 1.46497 * 120.00001 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47449 * 180.02562 * 8 7 5 10 10 C 1.31002 * 120.00565 * 127.15930 * 9 8 7 11 11 C 1.50699 * 119.99225 * 7.55470 * 10 9 8 12 12 N 1.46511 * 109.46619 * 127.01118 * 11 10 9 13 13 C 1.36931 * 120.00114 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99791 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00469 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00453 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99532 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47166 * 90.00067 * 17 15 13 19 19 H 1.48501 * 109.47140 * 209.99635 * 17 15 13 20 20 H 1.48499 * 109.47103 * 329.99894 * 17 15 13 21 21 C 1.36409 * 105.61846 * 359.97438 * 4 3 2 22 22 C 1.50701 * 125.80596 * 179.97438 * 21 4 3 23 23 O 1.33653 * 108.39651 * 359.75949 * 21 4 3 24 24 H 1.08997 * 109.46590 * 90.00304 * 1 2 3 25 25 H 1.08999 * 109.46904 * 330.00264 * 1 2 3 26 26 H 1.08997 * 109.46778 * 209.99989 * 1 2 3 27 27 H 1.07993 * 127.02617 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00018 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47491 * 300.00617 * 8 7 5 30 30 H 1.09001 * 109.46896 * 60.00578 * 8 7 5 31 31 H 1.08006 * 119.99895 * 307.15830 * 9 8 7 32 32 H 1.07997 * 119.99879 * 187.56211 * 10 9 8 33 33 H 1.08997 * 109.47342 * 247.00473 * 11 10 9 34 34 H 1.08990 * 109.47615 * 7.01332 * 11 10 9 35 35 H 0.97002 * 119.99890 * 359.97438 * 12 11 10 36 36 H 0.96999 * 120.00330 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46773 * 90.00356 * 22 21 4 38 38 H 1.08997 * 109.47590 * 210.00576 * 22 21 4 39 39 H 1.09005 * 109.46953 * 330.00536 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4126 0.0014 6 8 5.9891 0.8666 0.0023 7 7 4.8243 2.7581 0.0010 8 6 6.0483 3.5630 0.0023 9 6 5.6875 5.0261 0.0021 10 6 6.1951 5.8261 0.9068 11 6 7.2670 5.3246 1.8397 12 7 8.4192 6.2283 1.7905 13 6 9.5224 5.9738 2.5606 14 1 9.5431 5.1070 3.2046 15 6 10.6142 6.8297 2.5135 16 7 11.6745 6.5853 3.2541 17 14 10.5781 8.3292 1.4002 18 1 10.0184 9.4855 2.1451 19 1 11.9583 8.6486 0.9549 20 1 9.7289 8.0457 0.2154 21 6 3.5790 -0.7581 0.0015 22 6 4.7390 -1.7201 0.0019 23 8 2.2853 -1.0935 0.0068 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5138 27 1 1.9595 2.1230 -0.0004 28 1 3.9575 3.1935 0.0005 29 1 6.6332 3.3334 0.8930 30 1 6.6353 3.3331 -0.8870 31 1 5.0104 5.4152 -0.7440 32 1 5.8452 6.8449 0.9841 33 1 6.8763 5.2893 2.8567 34 1 7.5761 4.3251 1.5343 35 1 8.4004 7.0070 1.2123 36 1 12.4376 7.1833 3.2210 37 1 5.0188 -1.9514 1.0297 38 1 4.4506 -2.6374 -0.5113 39 1 5.5868 -1.2673 -0.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482981806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:18 Heat of formation + Delta-G solvation = 8.507596 kcal Electronic energy + Delta-G solvation = -20372.426722 eV Core-core repulsion = 17089.751386 eV Total energy + Delta-G solvation = -3282.675336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.86038 -39.43921 -36.68891 -34.65046 -33.54701 -33.12632 -32.70120 -30.85379 -29.77136 -27.11674 -25.55966 -24.84677 -23.01612 -22.05689 -21.13455 -20.02305 -18.72683 -17.58274 -17.03818 -16.76836 -16.22318 -15.81979 -15.40272 -14.69941 -14.48581 -14.13260 -13.89122 -13.73238 -13.65931 -13.30202 -13.17664 -13.04837 -12.90932 -12.73170 -12.69460 -12.51386 -11.97981 -11.81804 -11.21699 -10.85778 -10.52743 -10.12002 -10.05359 -10.01493 -9.59151 -9.25965 -9.06287 -8.71586 -8.58145 -7.21759 -5.75787 -3.12044 1.16754 1.72923 2.13831 2.44230 3.29887 3.37766 3.38687 3.41147 3.46334 4.15243 4.52655 4.60036 4.61113 4.86740 4.92397 5.00524 5.02535 5.16037 5.20254 5.29145 5.32551 5.47662 5.52736 5.57636 5.64426 5.67133 5.81630 5.94025 6.03259 6.10578 6.28679 6.45257 6.50626 6.76849 6.79221 7.02790 7.50792 7.99930 8.21710 8.42748 9.21226 9.93108 10.12753 11.42422 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.002822 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.236190 B = 9919.124875 C =10448.340223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.186 4.186 4 C -0.241 4.241 5 C 0.586 3.414 6 O -0.539 6.539 7 N -0.716 5.716 8 C 0.140 3.860 9 C -0.193 4.193 10 C -0.118 4.118 11 C 0.166 3.834 12 N -0.751 5.751 13 C -0.246 4.246 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.077 3.923 22 C -0.083 4.083 23 O -0.176 6.176 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.398 0.602 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.362 0.638 36 H 0.260 0.740 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.279 -12.910 -9.295 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.064 4.064 3 C -0.206 4.206 4 C -0.245 4.245 5 C 0.374 3.626 6 O -0.418 6.418 7 N -0.367 5.367 8 C 0.018 3.982 9 C -0.212 4.212 10 C -0.138 4.138 11 C 0.040 3.960 12 N -0.397 5.397 13 C -0.376 4.376 14 H 0.109 0.891 15 C -0.191 4.191 16 N -0.581 5.581 17 Si 0.716 3.284 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.025 3.975 22 C -0.139 4.139 23 O -0.073 6.073 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.173 0.827 28 H 0.232 0.768 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -24.431 -13.686 -9.119 29.450 hybrid contribution -0.380 1.748 -0.787 1.955 sum -24.811 -11.937 -9.906 29.261 Atomic orbital electron populations 1.20333 0.84726 1.04255 1.03651 1.22223 0.93981 0.83740 1.06424 1.22577 0.90806 0.99465 1.07723 1.21152 0.93798 0.93330 1.16260 1.17182 0.87348 0.81832 0.76232 1.90785 1.28712 1.71782 1.50520 1.45778 1.10096 1.05538 1.75288 1.20589 0.86149 0.87617 1.03871 1.22635 1.04339 0.94524 0.99749 1.23311 0.95822 0.99670 0.94965 1.19978 0.86013 0.94085 0.95961 1.42620 1.15427 1.29028 1.52596 1.19073 0.91782 1.09237 1.17470 0.89101 1.24678 0.96123 0.98830 0.99496 1.69703 1.06017 1.39215 1.43135 0.86522 0.76887 0.84007 0.80987 1.21066 1.21664 1.20275 1.22813 0.82808 0.94116 0.97812 1.20639 0.92099 0.96558 1.04594 1.83700 1.16236 1.35623 1.71731 0.89993 0.89144 0.90435 0.82654 0.76761 0.89060 0.90864 0.86984 0.86900 0.94530 0.93851 0.80553 0.93009 0.89192 0.90485 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.40 36.01 0.37 0.04 16 2 C -0.02 -0.13 7.28 -35.74 -0.26 -0.39 16 3 C -0.19 -1.73 10.48 -37.45 -0.39 -2.12 16 4 C -0.24 -2.90 6.31 -103.27 -0.65 -3.55 16 5 C 0.59 8.29 7.81 -12.54 -0.10 8.19 16 6 O -0.54 -9.33 14.85 5.27 0.08 -9.25 16 7 N -0.72 -8.75 5.54 -62.58 -0.35 -9.10 16 8 C 0.14 1.97 5.76 -5.20 -0.03 1.94 16 9 C -0.19 -2.49 9.63 -36.03 -0.35 -2.83 16 10 C -0.12 -1.80 9.63 -36.03 -0.35 -2.14 16 11 C 0.17 3.27 6.35 -5.19 -0.03 3.23 16 12 N -0.75 -18.31 5.40 -61.08 -0.33 -18.64 16 13 C -0.25 -7.14 10.47 -15.06 -0.16 -7.30 16 14 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 15 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 17 Si 0.89 22.37 27.74 -169.99 -4.71 17.65 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 21 C 0.08 0.88 7.37 -34.97 -0.26 0.62 16 22 C -0.08 -0.78 9.89 36.01 0.36 -0.42 16 23 O -0.18 -1.85 10.52 7.65 0.08 -1.77 16 24 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.16 1.02 7.74 -52.49 -0.41 0.61 16 28 H 0.40 3.71 7.64 -40.82 -0.31 3.40 16 29 H 0.09 1.50 5.30 -51.93 -0.28 1.22 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.11 1.17 8.06 -52.48 -0.42 0.74 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.88 5.29 -51.93 -0.27 0.61 16 35 H 0.36 8.53 5.52 -40.82 -0.23 8.31 16 36 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.11 1.22 6.49 -51.93 -0.34 0.88 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -35.19 333.08 -6.60 -41.79 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.23 Total: 8.01 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.94 Total: -4.71 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.10 Total: -56.74 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.16 Total: -11.02 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.19 -6.60 -41.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482981806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.300 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds