Wall clock time and date at job start Tue Mar 31 2020 00:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34178 * 125.43452 * 2 1 4 4 C 1.47022 * 105.95130 * 179.97438 * 3 2 1 5 5 C 1.47389 * 127.19157 * 180.02562 * 4 3 2 6 6 O 1.21607 * 119.99703 * 179.97438 * 5 4 3 7 7 N 1.34772 * 119.99808 * 359.96971 * 5 4 3 8 8 C 1.46497 * 120.00001 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47449 * 180.02562 * 8 7 5 10 10 C 1.31002 * 120.00565 * 127.15930 * 9 8 7 11 11 C 1.50699 * 119.99225 * 7.55470 * 10 9 8 12 12 N 1.46511 * 109.46619 * 127.01118 * 11 10 9 13 13 C 1.36931 * 120.00114 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99791 * 359.97438 * 13 12 11 15 15 C 1.38810 * 120.00469 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00453 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99532 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47166 * 90.00067 * 17 15 13 19 19 H 1.48501 * 109.47140 * 209.99635 * 17 15 13 20 20 H 1.48499 * 109.47103 * 329.99894 * 17 15 13 21 21 C 1.36409 * 105.61846 * 359.97438 * 4 3 2 22 22 C 1.50701 * 125.80596 * 179.97438 * 21 4 3 23 23 O 1.33653 * 108.39651 * 359.75949 * 21 4 3 24 24 H 1.08997 * 109.46590 * 90.00304 * 1 2 3 25 25 H 1.08999 * 109.46904 * 330.00264 * 1 2 3 26 26 H 1.08997 * 109.46778 * 209.99989 * 1 2 3 27 27 H 1.07993 * 127.02617 * 359.97438 * 3 2 1 28 28 H 0.97000 * 120.00018 * 0.02562 * 7 5 4 29 29 H 1.08998 * 109.47491 * 300.00617 * 8 7 5 30 30 H 1.09001 * 109.46896 * 60.00578 * 8 7 5 31 31 H 1.08006 * 119.99895 * 307.15830 * 9 8 7 32 32 H 1.07997 * 119.99879 * 187.56211 * 10 9 8 33 33 H 1.08997 * 109.47342 * 247.00473 * 11 10 9 34 34 H 1.08990 * 109.47615 * 7.01332 * 11 10 9 35 35 H 0.97002 * 119.99890 * 359.97438 * 12 11 10 36 36 H 0.96999 * 120.00330 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.46773 * 90.00356 * 22 21 4 38 38 H 1.08997 * 109.47590 * 210.00576 * 22 21 4 39 39 H 1.09005 * 109.46953 * 330.00536 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4126 0.0014 6 8 5.9891 0.8666 0.0023 7 7 4.8243 2.7581 0.0010 8 6 6.0483 3.5630 0.0023 9 6 5.6875 5.0261 0.0021 10 6 6.1951 5.8261 0.9068 11 6 7.2670 5.3246 1.8397 12 7 8.4192 6.2283 1.7905 13 6 9.5224 5.9738 2.5606 14 1 9.5431 5.1070 3.2046 15 6 10.6142 6.8297 2.5135 16 7 11.6745 6.5853 3.2541 17 14 10.5781 8.3292 1.4002 18 1 10.0184 9.4855 2.1451 19 1 11.9583 8.6486 0.9549 20 1 9.7289 8.0457 0.2154 21 6 3.5790 -0.7581 0.0015 22 6 4.7390 -1.7201 0.0019 23 8 2.2853 -1.0935 0.0068 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5138 27 1 1.9595 2.1230 -0.0004 28 1 3.9575 3.1935 0.0005 29 1 6.6332 3.3334 0.8930 30 1 6.6353 3.3331 -0.8870 31 1 5.0104 5.4152 -0.7440 32 1 5.8452 6.8449 0.9841 33 1 6.8763 5.2893 2.8567 34 1 7.5761 4.3251 1.5343 35 1 8.4004 7.0070 1.2123 36 1 12.4376 7.1833 3.2210 37 1 5.0188 -1.9514 1.0297 38 1 4.4506 -2.6374 -0.5113 39 1 5.5868 -1.2673 -0.5124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482981806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:17 Heat of formation + Delta-G solvation = -16.758154 kcal Electronic energy + Delta-G solvation = -20373.522327 eV Core-core repulsion = 17089.751386 eV Total energy + Delta-G solvation = -3283.770941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.62467 -40.55701 -38.08215 -36.21772 -34.63330 -33.98628 -33.86249 -32.76886 -30.42542 -28.47993 -26.88047 -25.77607 -24.05332 -23.90574 -21.98580 -21.10618 -20.28053 -19.02571 -18.12857 -17.58480 -17.45653 -16.73202 -16.63649 -16.33374 -15.81743 -15.45925 -15.15430 -14.87816 -14.47613 -14.33481 -14.28357 -14.12706 -14.08251 -13.79975 -13.49008 -13.46257 -13.23414 -13.05664 -12.74760 -12.49475 -12.21007 -11.88424 -11.66557 -11.20677 -11.06076 -10.84627 -10.37996 -9.99058 -9.38201 -9.27528 -8.05343 -5.40566 0.27715 0.99640 1.02503 1.37329 1.42297 1.49972 1.72112 2.27362 2.35855 2.47398 3.25551 3.48543 3.70563 3.77565 3.82211 3.87694 4.09801 4.25450 4.30365 4.44899 4.53576 4.56574 4.58521 4.68032 4.75551 4.81167 4.88389 4.94046 5.01769 5.06303 5.20167 5.34358 5.44867 5.53525 5.69388 5.84389 6.03772 6.18174 6.52838 7.04454 7.18054 7.78335 8.00338 9.16179 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.002822 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.236190 B = 9919.124875 C =10448.340223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.192 4.192 4 C -0.265 4.265 5 C 0.581 3.419 6 O -0.582 6.582 7 N -0.701 5.701 8 C 0.138 3.862 9 C -0.155 4.155 10 C -0.136 4.136 11 C 0.161 3.839 12 N -0.753 5.753 13 C -0.243 4.243 14 H 0.051 0.949 15 C -0.066 4.066 16 N -0.984 5.984 17 Si 0.964 3.036 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.249 1.249 21 C 0.065 3.935 22 C -0.082 4.082 23 O -0.182 6.182 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.184 0.816 28 H 0.416 0.584 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.028 0.972 34 H 0.033 0.967 35 H 0.369 0.631 36 H 0.260 0.740 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.711 -11.554 -11.319 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.064 4.064 3 C -0.211 4.211 4 C -0.269 4.269 5 C 0.370 3.630 6 O -0.464 6.464 7 N -0.353 5.353 8 C 0.015 3.985 9 C -0.174 4.174 10 C -0.155 4.155 11 C 0.036 3.964 12 N -0.399 5.399 13 C -0.374 4.374 14 H 0.069 0.931 15 C -0.257 4.257 16 N -0.634 5.634 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.221 1.221 20 H -0.173 1.173 21 C 0.012 3.988 22 C -0.138 4.138 23 O -0.079 6.079 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.201 0.799 28 H 0.253 0.747 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.955 -12.326 -11.157 32.525 hybrid contribution 0.606 1.145 -0.116 1.301 sum -27.349 -11.181 -11.273 31.624 Atomic orbital electron populations 1.20552 0.81670 1.05586 1.05025 1.23062 0.95591 0.83008 1.04706 1.22877 0.89161 1.01091 1.07933 1.21171 0.94241 0.93699 1.17790 1.17577 0.87573 0.82382 0.75448 1.90761 1.30447 1.72623 1.52534 1.45571 1.10316 1.04920 1.74468 1.20445 0.86758 0.89145 1.02147 1.22824 1.02942 0.92799 0.98808 1.23073 0.95914 1.01263 0.95290 1.20061 0.86134 0.93118 0.97077 1.42592 1.15341 1.30053 1.51913 1.19035 0.93520 1.07758 1.17110 0.93073 1.25624 0.95594 1.02812 1.01713 1.69903 1.07053 1.40966 1.45493 0.85287 0.77042 0.79236 0.79478 1.19898 1.22128 1.17318 1.23080 0.83564 0.94377 0.97752 1.20621 0.91154 0.97142 1.04853 1.83720 1.15939 1.36599 1.71675 0.88460 0.87132 0.89777 0.79899 0.74704 0.92027 0.91603 0.82711 0.84523 0.95366 0.94889 0.79710 0.93164 0.88862 0.88137 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 71.24 0.74 0.31 16 2 C -0.02 -0.24 7.28 24.76 0.18 -0.06 16 3 C -0.19 -3.11 10.48 23.65 0.25 -2.87 16 4 C -0.26 -6.22 6.31 -18.99 -0.12 -6.34 16 5 C 0.58 16.51 7.81 86.65 0.68 17.19 16 6 O -0.58 -21.07 14.85 -4.05 -0.06 -21.13 16 7 N -0.70 -16.23 5.54 -470.16 -2.61 -18.84 16 8 C 0.14 3.77 5.76 85.63 0.49 4.26 16 9 C -0.15 -3.47 9.63 25.64 0.25 -3.22 16 10 C -0.14 -3.77 9.63 25.64 0.25 -3.52 16 11 C 0.16 6.36 6.35 85.63 0.54 6.90 16 12 N -0.75 -36.45 5.40 -347.17 -1.87 -38.32 16 13 C -0.24 -14.53 10.47 84.03 0.88 -13.65 16 14 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 15 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 16 N -0.98 -64.76 13.97 21.65 0.30 -64.45 16 17 Si 0.96 45.98 27.74 68.60 1.90 47.89 16 18 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 20 H -0.25 -10.62 6.52 99.48 0.65 -9.98 16 21 C 0.07 1.47 7.37 25.26 0.19 1.65 16 22 C -0.08 -1.58 9.89 71.24 0.70 -0.88 16 23 O -0.18 -3.61 10.52 4.46 0.05 -3.56 16 24 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.18 1.73 7.74 -2.91 -0.02 1.71 16 28 H 0.42 6.58 7.64 -92.71 -0.71 5.87 16 29 H 0.06 2.08 5.30 -2.39 -0.01 2.07 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.03 1.39 5.29 -2.39 -0.01 1.38 16 35 H 0.37 16.61 5.52 -92.71 -0.51 16.10 16 36 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 37 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 2.15 6.49 -2.38 -0.02 2.13 16 Total: -1.00 -79.97 333.08 3.01 -76.96 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.20 Total: 25.20 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.49 Total: -3.75 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -4.18 Total: -121.61 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.01 Total: -24.69 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.89 kcal Total: -79.97 3.01 -76.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482981806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal (2) G-P(sol) polarization free energy of solvation -79.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds