Wall clock time and date at job start Tue Mar 31 2020 00:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34184 * 125.43720 * 2 1 4 4 C 1.47020 * 105.95357 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18976 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00375 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99932 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47136 * 324.99777 * 8 7 5 10 10 C 1.53005 * 109.47047 * 205.00071 * 8 7 5 11 11 N 1.46501 * 109.47223 * 54.99796 * 10 8 7 12 12 C 1.36929 * 119.99774 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00688 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99749 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00287 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99984 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47153 * 89.99851 * 16 14 12 18 18 H 1.48499 * 109.47245 * 210.00153 * 16 14 12 19 19 H 1.48502 * 109.47053 * 330.00437 * 16 14 12 20 20 C 1.52995 * 109.47399 * 85.00011 * 8 7 5 21 21 C 1.53004 * 117.49737 * 8.74433 * 20 8 7 22 22 C 1.53009 * 117.49438 * 300.08854 * 20 8 7 23 23 C 1.36411 * 105.61474 * 359.97438 * 4 3 2 24 24 O 1.33658 * 108.40014 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.46926 * 89.99776 * 1 2 3 26 26 H 1.08996 * 109.47005 * 210.00028 * 1 2 3 27 27 H 1.09001 * 109.47134 * 330.00337 * 1 2 3 28 28 H 1.07999 * 127.02209 * 359.70047 * 3 2 1 29 29 H 0.97000 * 120.00222 * 359.97438 * 7 5 4 30 30 H 1.09000 * 109.47041 * 175.00014 * 10 8 7 31 31 H 1.09002 * 109.46650 * 294.99829 * 10 8 7 32 32 H 0.97001 * 119.99872 * 359.97438 * 11 10 8 33 33 H 0.96996 * 120.00374 * 179.97438 * 15 14 12 34 34 H 1.08994 * 115.55272 * 154.42172 * 20 8 7 35 35 H 1.09001 * 117.49842 * 0.02562 * 21 20 8 36 36 H 1.09005 * 117.49714 * 145.02669 * 21 20 8 37 37 H 1.09007 * 117.49459 * 214.97633 * 22 20 8 38 38 H 1.08991 * 117.50054 * 359.97438 * 22 20 8 39 39 H 1.08001 * 125.80413 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1067 0.8075 0.0015 8 6 7.3309 1.6124 0.0018 9 1 7.1724 2.5150 -0.5884 10 6 8.4757 0.7997 -0.6066 11 7 8.0865 0.3288 -1.9381 12 6 8.9569 -0.4250 -2.6791 13 1 9.9302 -0.6727 -2.2820 14 6 8.5879 -0.8717 -3.9406 15 7 7.4016 -0.5702 -4.4246 16 14 9.7756 -1.8994 -4.9519 17 1 9.5637 -3.3384 -4.6527 18 1 9.5364 -1.6537 -6.3968 19 1 11.1708 -1.5230 -4.6101 20 6 7.6871 1.9986 1.4387 21 6 6.8860 1.3432 2.5656 22 6 6.6618 2.8186 2.2246 23 6 3.5790 -0.7581 0.0015 24 8 2.2852 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0045 29 1 6.1630 -0.1609 0.0030 30 1 9.3633 1.4271 -0.6881 31 1 8.6932 -0.0562 0.0324 32 1 7.2119 0.5503 -2.2944 33 1 7.1439 -0.8820 -5.3062 34 1 8.7419 2.2015 1.6233 35 1 6.1055 0.6366 2.2832 36 1 7.4138 1.1154 3.4917 37 1 7.0423 3.5607 2.9265 38 1 5.7339 3.0832 1.7178 39 1 4.4103 -1.4476 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483557026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:33 Heat of formation + Delta-G solvation = 16.344765 kcal Electronic energy + Delta-G solvation = -21661.295760 eV Core-core repulsion = 18378.960270 eV Total energy + Delta-G solvation = -3282.335490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.50883 -39.76458 -36.98878 -34.89640 -33.39030 -33.03417 -32.04019 -30.94835 -28.24108 -26.59279 -24.23672 -23.49865 -22.21997 -21.47755 -21.03905 -19.99282 -19.43685 -17.69996 -17.15347 -16.31917 -16.06828 -15.83556 -15.62757 -14.76097 -14.34349 -14.12003 -13.44899 -13.35323 -13.24963 -13.17485 -13.14241 -12.85013 -12.73859 -12.12742 -11.85463 -11.61813 -11.33042 -11.20180 -10.90153 -10.83955 -10.22864 -10.10311 -9.81101 -9.69205 -9.64466 -9.54279 -8.93494 -8.66774 -8.52411 -6.98207 -5.79629 -3.09849 1.46112 2.08161 2.83973 3.40430 3.42937 3.46793 3.48586 3.62627 4.08782 4.53204 4.56422 4.76703 4.93472 4.98446 5.19787 5.23141 5.23226 5.28787 5.45079 5.52633 5.53754 5.63823 5.75872 5.80006 5.86704 5.99441 6.03945 6.04860 6.24035 6.33131 6.37299 6.48495 6.56098 6.68884 6.93935 7.02708 7.66488 7.85905 8.37880 8.54430 9.49818 10.05497 10.40986 11.42541 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.005449 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.044860 B = 5137.487712 C = 6747.335027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.023 4.023 3 C -0.162 4.162 4 C -0.227 4.227 5 C 0.589 3.411 6 O -0.540 6.540 7 N -0.705 5.705 8 C 0.169 3.831 9 H 0.092 0.908 10 C 0.148 3.852 11 N -0.732 5.732 12 C -0.243 4.243 13 H 0.071 0.929 14 C -0.011 4.011 15 N -0.931 5.931 16 Si 0.907 3.093 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C -0.160 4.160 21 C -0.177 4.177 22 C -0.187 4.187 23 C 0.024 3.976 24 O -0.174 6.174 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.157 0.843 29 H 0.402 0.598 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.264 0.865 13.434 16.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.181 4.181 4 C -0.232 4.232 5 C 0.377 3.623 6 O -0.419 6.419 7 N -0.355 5.355 8 C 0.065 3.935 9 H 0.110 0.890 10 C 0.020 3.980 11 N -0.377 5.377 12 C -0.374 4.374 13 H 0.089 0.911 14 C -0.207 4.207 15 N -0.579 5.579 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.207 1.207 20 C -0.180 4.180 21 C -0.215 4.215 22 C -0.224 4.224 23 C -0.046 4.046 24 O -0.070 6.070 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.107 0.893 28 H 0.174 0.826 29 H 0.237 0.763 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.270 1.369 13.359 16.905 hybrid contribution 0.701 -0.859 -0.809 1.372 sum -9.568 0.510 12.550 15.790 Atomic orbital electron populations 1.20295 0.84882 1.03945 1.03649 1.22266 0.94073 0.83781 1.06986 1.22453 0.90107 0.99535 1.06018 1.21526 0.94757 0.93285 1.13586 1.17214 0.82285 0.87069 0.75776 1.90686 1.87132 1.13621 1.50444 1.45818 1.05030 1.10504 1.74133 1.20766 0.83915 0.95325 0.93541 0.88987 1.20918 0.93690 0.95445 0.87964 1.42360 1.18573 1.63006 1.13763 1.19211 0.96740 1.24401 0.97095 0.91108 1.24750 0.96986 1.01351 0.97649 1.69668 1.19609 1.50169 1.18426 0.86194 0.80250 0.80056 0.79685 1.21726 1.21779 1.20737 1.22701 0.97438 1.05248 0.92631 1.22881 1.03389 0.96443 0.98750 1.23343 1.02533 0.93407 1.03098 1.24486 0.84111 0.95636 1.00365 1.83713 1.16546 1.35460 1.71280 0.90019 0.90570 0.89345 0.82562 0.76338 0.94738 0.95586 0.77976 0.93465 0.87229 0.89093 0.89532 0.89760 0.86532 0.77095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.40 36.01 0.37 -0.17 16 2 C -0.02 -0.27 7.28 -35.74 -0.26 -0.53 16 3 C -0.16 -2.25 10.90 -37.45 -0.41 -2.65 16 4 C -0.23 -3.48 6.31 -103.28 -0.65 -4.13 16 5 C 0.59 10.19 6.65 -12.54 -0.08 10.10 16 6 O -0.54 -10.76 14.01 5.27 0.07 -10.68 16 7 N -0.70 -11.42 3.04 -54.89 -0.17 -11.58 16 8 C 0.17 2.89 2.59 -67.93 -0.18 2.71 16 9 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 10 C 0.15 2.86 5.80 -4.04 -0.02 2.83 16 11 N -0.73 -17.97 5.43 -59.91 -0.33 -18.30 16 12 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 15 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 16 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 C -0.16 -2.32 5.71 -90.62 -0.52 -2.84 16 21 C -0.18 -2.34 9.74 -26.69 -0.26 -2.60 16 22 C -0.19 -2.68 9.82 -26.69 -0.26 -2.94 16 23 C 0.02 0.32 11.61 30.07 0.35 0.67 16 24 O -0.17 -2.28 10.52 7.66 0.08 -2.20 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 29 H 0.40 6.04 7.57 -40.82 -0.31 5.73 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.39 10.18 7.33 -40.82 -0.30 9.88 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.11 1.45 8.11 -51.93 -0.42 1.03 16 35 H 0.09 1.22 6.67 -51.93 -0.35 0.87 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 38 H 0.12 1.96 5.01 -51.93 -0.26 1.70 16 39 H 0.21 2.18 7.47 -52.49 -0.39 1.79 16 LS Contribution 330.20 15.07 4.98 4.98 Total: -1.00 -32.73 330.20 -7.18 -39.90 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.35 Total: 14.73 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.17 Total: -6.76 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 0.23 Total: -57.06 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.15 Total: -12.88 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.73 -7.18 -39.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483557026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.249 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds