Wall clock time and date at job start Tue Mar 31 2020 00:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34184 * 125.43720 * 2 1 4 4 C 1.47020 * 105.95357 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.18976 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00375 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99717 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99932 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47136 * 324.99777 * 8 7 5 10 10 C 1.53005 * 109.47047 * 205.00071 * 8 7 5 11 11 N 1.46501 * 109.47223 * 54.99796 * 10 8 7 12 12 C 1.36929 * 119.99774 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00688 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99749 * 179.97438 * 12 11 10 15 15 N 1.31617 * 120.00287 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99984 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47153 * 89.99851 * 16 14 12 18 18 H 1.48499 * 109.47245 * 210.00153 * 16 14 12 19 19 H 1.48502 * 109.47053 * 330.00437 * 16 14 12 20 20 C 1.52995 * 109.47399 * 85.00011 * 8 7 5 21 21 C 1.53004 * 117.49737 * 8.74433 * 20 8 7 22 22 C 1.53009 * 117.49438 * 300.08854 * 20 8 7 23 23 C 1.36411 * 105.61474 * 359.97438 * 4 3 2 24 24 O 1.33658 * 108.40014 * 0.02562 * 23 4 3 25 25 H 1.09003 * 109.46926 * 89.99776 * 1 2 3 26 26 H 1.08996 * 109.47005 * 210.00028 * 1 2 3 27 27 H 1.09001 * 109.47134 * 330.00337 * 1 2 3 28 28 H 1.07999 * 127.02209 * 359.70047 * 3 2 1 29 29 H 0.97000 * 120.00222 * 359.97438 * 7 5 4 30 30 H 1.09000 * 109.47041 * 175.00014 * 10 8 7 31 31 H 1.09002 * 109.46650 * 294.99829 * 10 8 7 32 32 H 0.97001 * 119.99872 * 359.97438 * 11 10 8 33 33 H 0.96996 * 120.00374 * 179.97438 * 15 14 12 34 34 H 1.08994 * 115.55272 * 154.42172 * 20 8 7 35 35 H 1.09001 * 117.49842 * 0.02562 * 21 20 8 36 36 H 1.09005 * 117.49714 * 145.02669 * 21 20 8 37 37 H 1.09007 * 117.49459 * 214.97633 * 22 20 8 38 38 H 1.08991 * 117.50054 * 359.97438 * 22 20 8 39 39 H 1.08001 * 125.80413 * 180.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0933 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9024 1.4126 0.0003 6 8 4.8319 2.6266 -0.0010 7 7 6.1067 0.8075 0.0015 8 6 7.3309 1.6124 0.0018 9 1 7.1724 2.5150 -0.5884 10 6 8.4757 0.7997 -0.6066 11 7 8.0865 0.3288 -1.9381 12 6 8.9569 -0.4250 -2.6791 13 1 9.9302 -0.6727 -2.2820 14 6 8.5879 -0.8717 -3.9406 15 7 7.4016 -0.5702 -4.4246 16 14 9.7756 -1.8994 -4.9519 17 1 9.5637 -3.3384 -4.6527 18 1 9.5364 -1.6537 -6.3968 19 1 11.1708 -1.5230 -4.6101 20 6 7.6871 1.9986 1.4387 21 6 6.8860 1.3432 2.5656 22 6 6.6618 2.8186 2.2246 23 6 3.5790 -0.7581 0.0015 24 8 2.2852 -1.0935 0.0009 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 -0.0045 29 1 6.1630 -0.1609 0.0030 30 1 9.3633 1.4271 -0.6881 31 1 8.6932 -0.0562 0.0324 32 1 7.2119 0.5503 -2.2944 33 1 7.1439 -0.8820 -5.3062 34 1 8.7419 2.2015 1.6233 35 1 6.1055 0.6366 2.2832 36 1 7.4138 1.1154 3.4917 37 1 7.0423 3.5607 2.9265 38 1 5.7339 3.0832 1.7178 39 1 4.4103 -1.4476 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483557026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:32 Heat of formation + Delta-G solvation = -4.648004 kcal Electronic energy + Delta-G solvation = -21662.206075 eV Core-core repulsion = 18378.960270 eV Total energy + Delta-G solvation = -3283.245805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54899 -41.09963 -38.31780 -36.55655 -34.91711 -34.05671 -33.34982 -32.50826 -29.84243 -27.50204 -26.03868 -24.81585 -23.46671 -22.96024 -22.10850 -21.21926 -20.71726 -19.28288 -18.58101 -17.43978 -17.36162 -17.05156 -17.01140 -16.48577 -15.68442 -15.31671 -15.17528 -15.03529 -14.46692 -14.36670 -14.02049 -13.79684 -13.75545 -13.63150 -13.13080 -12.90795 -12.75485 -12.67056 -12.60480 -12.33015 -12.09012 -11.83702 -11.35124 -11.03390 -10.96186 -10.82066 -10.77534 -10.00864 -9.54021 -9.01626 -7.93958 -5.23950 0.34237 1.03865 1.49041 1.50384 1.58813 1.87412 2.14159 2.34958 2.56223 2.94659 3.40632 3.56460 3.66259 3.67350 3.95984 4.05130 4.09364 4.18108 4.34538 4.45544 4.49325 4.54196 4.65001 4.73866 4.76125 4.82871 4.87596 4.89570 5.05245 5.10105 5.14207 5.26128 5.38697 5.41682 5.50904 5.55837 6.00280 6.26159 6.54686 7.21575 7.33832 8.06668 8.30782 9.29059 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.005449 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.044860 B = 5137.487712 C = 6747.335027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.011 4.011 3 C -0.191 4.191 4 C -0.259 4.259 5 C 0.587 3.413 6 O -0.574 6.574 7 N -0.698 5.698 8 C 0.178 3.822 9 H 0.060 0.940 10 C 0.151 3.849 11 N -0.743 5.743 12 C -0.243 4.243 13 H 0.080 0.920 14 C -0.072 4.072 15 N -0.969 5.969 16 Si 0.973 3.027 17 H -0.284 1.284 18 H -0.301 1.301 19 H -0.270 1.270 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.193 4.193 23 C 0.036 3.964 24 O -0.176 6.176 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.157 0.843 29 H 0.408 0.592 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.988 -0.447 14.823 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.059 4.059 3 C -0.211 4.211 4 C -0.264 4.264 5 C 0.376 3.624 6 O -0.456 6.456 7 N -0.348 5.348 8 C 0.073 3.927 9 H 0.078 0.922 10 C 0.024 3.976 11 N -0.387 5.387 12 C -0.375 4.375 13 H 0.098 0.902 14 C -0.265 4.265 15 N -0.620 5.620 16 Si 0.802 3.198 17 H -0.211 1.211 18 H -0.228 1.228 19 H -0.194 1.194 20 C -0.184 4.184 21 C -0.197 4.197 22 C -0.229 4.229 23 C -0.035 4.035 24 O -0.072 6.072 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.175 0.825 29 H 0.244 0.756 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.146 0.854 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -9.964 0.043 14.795 17.837 hybrid contribution 0.586 -0.416 -1.189 1.389 sum -9.378 -0.372 13.606 16.529 Atomic orbital electron populations 1.20534 0.81609 1.05694 1.04897 1.23004 0.95715 0.82761 1.04450 1.22615 0.89995 1.00384 1.08057 1.21551 0.94550 0.94302 1.15992 1.17514 0.83009 0.86848 0.75026 1.90662 1.87628 1.15136 1.52188 1.45726 1.04637 1.10677 1.73775 1.20533 0.83521 0.93716 0.94935 0.92166 1.21037 0.94502 0.96108 0.85908 1.42534 1.17757 1.62892 1.15484 1.19637 0.97193 1.23405 0.97255 0.90168 1.25540 0.98594 1.03262 0.99063 1.69835 1.21603 1.52041 1.18521 0.85152 0.78726 0.78556 0.77362 1.21136 1.22753 1.19442 1.22627 0.98469 1.06256 0.91084 1.22960 1.02597 0.95301 0.98885 1.23278 1.01379 0.94887 1.03399 1.24882 0.84813 0.95173 0.98585 1.83751 1.16548 1.35893 1.71010 0.88858 0.88896 0.87522 0.82534 0.75607 0.94325 0.93818 0.79445 0.94158 0.85415 0.89552 0.86970 0.87843 0.89252 0.74754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.40 71.24 0.74 -0.19 16 2 C -0.01 -0.25 7.28 24.76 0.18 -0.07 16 3 C -0.19 -5.37 10.90 23.65 0.26 -5.11 16 4 C -0.26 -8.09 6.31 -18.99 -0.12 -8.21 16 5 C 0.59 20.98 6.65 86.65 0.58 21.55 16 6 O -0.57 -24.07 14.01 -4.05 -0.06 -24.13 16 7 N -0.70 -22.85 3.04 -445.84 -1.36 -24.21 16 8 C 0.18 6.10 2.59 44.99 0.12 6.21 16 9 H 0.06 2.45 7.58 -2.38 -0.02 2.44 16 10 C 0.15 5.72 5.80 86.38 0.50 6.22 16 11 N -0.74 -36.52 5.43 -343.44 -1.87 -38.39 16 12 C -0.24 -13.13 9.99 84.04 0.84 -12.29 16 13 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 14 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 15 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 16 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C -0.16 -4.55 5.71 -10.79 -0.06 -4.61 16 21 C -0.16 -3.89 9.74 30.62 0.30 -3.59 16 22 C -0.19 -5.36 9.82 30.62 0.30 -5.06 16 23 C 0.04 0.92 11.61 67.39 0.78 1.70 16 24 O -0.18 -4.40 10.52 4.48 0.05 -4.35 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 29 H 0.41 12.15 7.57 -92.71 -0.70 11.45 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.37 20.11 7.33 -92.71 -0.68 19.43 16 33 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.13 3.07 8.11 -2.39 -0.02 3.05 16 35 H 0.09 2.19 6.67 -2.39 -0.02 2.17 16 36 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.09 3.07 5.01 -2.39 -0.01 3.06 16 39 H 0.24 4.56 7.47 -2.91 -0.02 4.54 16 Total: -1.00 -71.11 330.20 3.65 -67.45 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.30 Total: 42.03 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 4.88 Total: -7.06 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -2.94 Total: -121.29 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.01 Total: -28.48 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -71.11 3.65 -67.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483557026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.803 kcal (2) G-P(sol) polarization free energy of solvation -71.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds