Wall clock time and date at job start Tue Mar 31 2020 00:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34177 * 125.43961 * 2 1 4 4 C 1.47025 * 105.95467 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19094 * 180.02562 * 4 3 2 6 6 O 1.21604 * 120.00476 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99596 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99726 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47007 * 34.99037 * 8 7 5 10 10 C 1.52996 * 109.47012 * 154.99585 * 8 7 5 11 11 N 1.46498 * 109.47059 * 304.99483 * 10 8 7 12 12 C 1.36943 * 119.99752 * 179.72430 * 11 10 8 13 13 H 1.08002 * 119.99793 * 0.27665 * 12 11 10 14 14 C 1.38811 * 120.00012 * 180.27737 * 12 11 10 15 15 N 1.31624 * 119.99698 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00072 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47290 * 120.00044 * 16 14 12 19 19 H 1.48503 * 109.47163 * 240.00049 * 16 14 12 20 20 C 1.53003 * 109.46609 * 274.99704 * 8 7 5 21 21 C 1.52996 * 117.49852 * 128.74926 * 20 8 7 22 22 C 1.52995 * 117.50233 * 60.08634 * 20 8 7 23 23 C 1.36417 * 105.61281 * 0.26009 * 4 3 2 24 24 O 1.33650 * 108.39825 * 359.57849 * 23 4 3 25 25 H 1.08997 * 109.47376 * 89.99374 * 1 2 3 26 26 H 1.08996 * 109.47720 * 209.99719 * 1 2 3 27 27 H 1.09002 * 109.46988 * 329.99798 * 1 2 3 28 28 H 1.08004 * 127.02486 * 0.02674 * 3 2 1 29 29 H 0.97000 * 119.99883 * 359.97438 * 7 5 4 30 30 H 1.09004 * 109.47066 * 184.99751 * 10 8 7 31 31 H 1.08994 * 109.46974 * 64.99899 * 10 8 7 32 32 H 0.97001 * 120.00384 * 0.02562 * 11 10 8 33 33 H 0.96999 * 119.99739 * 180.02562 * 15 14 12 34 34 H 1.09006 * 115.54473 * 274.41180 * 20 8 7 35 35 H 1.08997 * 117.49676 * 359.97438 * 21 20 8 36 36 H 1.08999 * 117.49788 * 145.01561 * 21 20 8 37 37 H 1.09001 * 117.49820 * 214.97543 * 22 20 8 38 38 H 1.09004 * 117.49643 * 359.97438 * 22 20 8 39 39 H 1.08006 * 125.79871 * 179.73559 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0003 6 8 4.8320 2.6264 0.0000 7 7 6.1068 0.8072 -0.0015 8 6 7.3310 1.6121 -0.0018 9 1 7.1724 2.5148 0.5882 10 6 8.4756 0.7995 0.6066 11 7 8.0864 0.3288 1.9382 12 6 8.9549 -0.4293 2.6773 13 1 9.9284 -0.6764 2.2804 14 6 8.5839 -0.8802 3.9367 15 7 7.3972 -0.5794 4.4201 16 14 9.7688 -1.9137 4.9452 17 1 11.0278 -2.1092 4.1825 18 1 10.0677 -1.2187 6.2231 19 1 9.1532 -3.2343 5.2321 20 6 7.6870 1.9981 -1.4389 21 6 7.9552 3.4765 -1.7274 22 6 6.6637 2.8215 -2.2235 23 6 3.5789 -0.7583 -0.0069 24 8 2.2851 -1.0935 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.9595 2.1230 0.0004 29 1 6.1629 -0.1611 -0.0022 30 1 9.3633 1.4269 0.6881 31 1 8.6931 -0.0565 -0.0322 32 1 7.2119 0.5504 2.2946 33 1 7.1381 -0.8941 5.3003 34 1 8.2722 1.2632 -1.9918 35 1 7.8775 4.1741 -0.8936 36 1 8.7164 3.7142 -2.4705 37 1 6.5758 2.6286 -3.2927 38 1 5.7365 3.0878 -1.7160 39 1 4.4102 -1.4477 -0.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483557027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:38 Heat of formation + Delta-G solvation = 11.910121 kcal Electronic energy + Delta-G solvation = -21503.458325 eV Core-core repulsion = 18220.930534 eV Total energy + Delta-G solvation = -3282.527791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.48832 -39.55940 -37.04639 -35.00203 -33.46170 -33.02987 -32.03184 -30.92157 -28.13931 -26.56654 -24.23851 -23.42041 -22.08387 -21.49506 -21.01740 -20.14534 -19.56983 -17.68580 -17.10732 -16.27263 -16.17314 -15.76210 -15.10812 -14.95146 -14.48411 -14.19169 -13.50932 -13.31603 -13.23969 -13.14578 -13.11954 -12.86082 -12.71287 -12.15528 -11.82224 -11.66490 -11.22401 -11.02305 -10.90859 -10.83865 -10.16440 -10.11767 -9.92956 -9.71931 -9.64988 -9.58174 -8.94081 -8.64839 -8.50123 -6.98356 -5.79971 -3.10226 1.48303 2.09644 2.85633 3.38902 3.41421 3.46815 3.48972 3.63853 4.16888 4.54126 4.57596 4.79582 4.91265 4.99949 5.19517 5.23691 5.28071 5.30066 5.42196 5.51590 5.53733 5.63851 5.77181 5.81374 5.87493 5.92143 6.02807 6.11131 6.23288 6.37136 6.39614 6.49027 6.55590 6.67723 6.95268 7.04325 7.66815 7.89444 8.37592 8.57547 9.49549 10.05147 10.40633 11.42275 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.005541 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.082632 B = 5051.615172 C = 6934.931986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.023 4.023 3 C -0.161 4.161 4 C -0.226 4.226 5 C 0.590 3.410 6 O -0.543 6.543 7 N -0.703 5.703 8 C 0.170 3.830 9 H 0.089 0.911 10 C 0.148 3.852 11 N -0.732 5.732 12 C -0.243 4.243 13 H 0.072 0.928 14 C -0.011 4.011 15 N -0.930 5.930 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.292 1.292 20 C -0.163 4.163 21 C -0.171 4.171 22 C -0.185 4.185 23 C 0.024 3.976 24 O -0.174 6.174 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.157 0.843 29 H 0.401 0.599 30 H 0.036 0.964 31 H 0.025 0.975 32 H 0.386 0.614 33 H 0.255 0.745 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 1.444 -13.304 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.181 4.181 4 C -0.231 4.231 5 C 0.378 3.622 6 O -0.423 6.423 7 N -0.353 5.353 8 C 0.065 3.935 9 H 0.107 0.893 10 C 0.020 3.980 11 N -0.377 5.377 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.208 4.208 15 N -0.579 5.579 16 Si 0.738 3.262 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.219 1.219 20 C -0.183 4.183 21 C -0.209 4.209 22 C -0.222 4.222 23 C -0.046 4.046 24 O -0.070 6.070 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.174 0.826 29 H 0.236 0.764 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -9.957 1.934 -13.233 16.673 hybrid contribution 0.684 -0.879 0.794 1.368 sum -9.273 1.054 -12.439 15.550 Atomic orbital electron populations 1.20288 0.84905 1.04157 1.03402 1.22258 0.94063 0.83793 1.07059 1.22454 0.90132 0.99519 1.06007 1.21531 0.94744 0.93291 1.13510 1.17190 0.82271 0.87032 0.75688 1.90673 1.87161 1.13673 1.50777 1.45795 1.04950 1.10443 1.74077 1.20816 0.83992 0.95489 0.93201 0.89311 1.20921 0.93810 0.95279 0.87984 1.42373 1.18690 1.62844 1.13825 1.19262 0.96751 1.24110 0.97262 0.91044 1.24754 0.96982 1.01353 0.97686 1.69685 1.19520 1.50178 1.18469 0.86123 0.80066 0.79742 0.80270 1.20532 1.21849 1.21872 1.22651 1.04041 0.94449 0.97166 1.22896 0.99610 0.94951 1.03398 1.23271 0.95614 1.04020 0.99299 1.24490 0.84083 0.95656 1.00349 1.83712 1.16565 1.35462 1.71306 0.90203 0.90486 0.89302 0.82576 0.76450 0.94595 0.95734 0.77974 0.93512 0.87886 0.88730 0.89222 0.89933 0.86450 0.77076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.40 36.00 0.37 -0.18 16 2 C -0.02 -0.28 7.28 -35.74 -0.26 -0.54 16 3 C -0.16 -2.26 10.90 -37.45 -0.41 -2.67 16 4 C -0.23 -3.51 6.31 -103.27 -0.65 -4.16 16 5 C 0.59 10.34 7.15 -12.54 -0.09 10.25 16 6 O -0.54 -10.86 14.00 5.27 0.07 -10.79 16 7 N -0.70 -11.57 4.49 -54.89 -0.25 -11.82 16 8 C 0.17 2.91 2.43 -67.93 -0.17 2.75 16 9 H 0.09 1.74 7.33 -51.93 -0.38 1.36 16 10 C 0.15 2.88 5.80 -4.04 -0.02 2.86 16 11 N -0.73 -18.04 5.43 -59.91 -0.33 -18.37 16 12 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 13 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 14 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 15 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 16 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C -0.16 -2.37 5.36 -90.62 -0.49 -2.86 16 21 C -0.17 -2.31 10.18 -26.70 -0.27 -2.59 16 22 C -0.19 -2.65 9.74 -26.70 -0.26 -2.91 16 23 C 0.02 0.32 11.61 30.08 0.35 0.67 16 24 O -0.17 -2.31 10.52 7.65 0.08 -2.23 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.16 2.03 8.06 -52.48 -0.42 1.60 16 29 H 0.40 6.08 7.57 -40.82 -0.31 5.77 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.39 10.22 7.33 -40.82 -0.30 9.92 16 33 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.10 1.38 8.11 -51.93 -0.42 0.95 16 35 H 0.09 1.34 8.05 -51.93 -0.42 0.93 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.12 1.97 5.02 -51.93 -0.26 1.71 16 39 H 0.21 2.20 7.47 -52.48 -0.39 1.81 16 LS Contribution 333.11 15.07 5.02 5.02 Total: -1.00 -32.83 333.11 -7.24 -40.08 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.41 Total: 14.79 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.14 Total: -6.58 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.15 Total: -57.40 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.15 Total: -13.02 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.83 -7.24 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483557027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.987 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds