Wall clock time and date at job start Tue Mar 31 2020 00:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34177 * 125.43961 * 2 1 4 4 C 1.47025 * 105.95467 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19094 * 180.02562 * 4 3 2 6 6 O 1.21604 * 120.00476 * 359.97438 * 5 4 3 7 7 N 1.34782 * 119.99596 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99726 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47007 * 34.99037 * 8 7 5 10 10 C 1.52996 * 109.47012 * 154.99585 * 8 7 5 11 11 N 1.46498 * 109.47059 * 304.99483 * 10 8 7 12 12 C 1.36943 * 119.99752 * 179.72430 * 11 10 8 13 13 H 1.08002 * 119.99793 * 0.27665 * 12 11 10 14 14 C 1.38811 * 120.00012 * 180.27737 * 12 11 10 15 15 N 1.31624 * 119.99698 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00072 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47290 * 120.00044 * 16 14 12 19 19 H 1.48503 * 109.47163 * 240.00049 * 16 14 12 20 20 C 1.53003 * 109.46609 * 274.99704 * 8 7 5 21 21 C 1.52996 * 117.49852 * 128.74926 * 20 8 7 22 22 C 1.52995 * 117.50233 * 60.08634 * 20 8 7 23 23 C 1.36417 * 105.61281 * 0.26009 * 4 3 2 24 24 O 1.33650 * 108.39825 * 359.57849 * 23 4 3 25 25 H 1.08997 * 109.47376 * 89.99374 * 1 2 3 26 26 H 1.08996 * 109.47720 * 209.99719 * 1 2 3 27 27 H 1.09002 * 109.46988 * 329.99798 * 1 2 3 28 28 H 1.08004 * 127.02486 * 0.02674 * 3 2 1 29 29 H 0.97000 * 119.99883 * 359.97438 * 7 5 4 30 30 H 1.09004 * 109.47066 * 184.99751 * 10 8 7 31 31 H 1.08994 * 109.46974 * 64.99899 * 10 8 7 32 32 H 0.97001 * 120.00384 * 0.02562 * 11 10 8 33 33 H 0.96999 * 119.99739 * 180.02562 * 15 14 12 34 34 H 1.09006 * 115.54473 * 274.41180 * 20 8 7 35 35 H 1.08997 * 117.49676 * 359.97438 * 21 20 8 36 36 H 1.08999 * 117.49788 * 145.01561 * 21 20 8 37 37 H 1.09001 * 117.49820 * 214.97543 * 22 20 8 38 38 H 1.09004 * 117.49643 * 359.97438 * 22 20 8 39 39 H 1.08006 * 125.79871 * 179.73559 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0003 6 8 4.8320 2.6264 0.0000 7 7 6.1068 0.8072 -0.0015 8 6 7.3310 1.6121 -0.0018 9 1 7.1724 2.5148 0.5882 10 6 8.4756 0.7995 0.6066 11 7 8.0864 0.3288 1.9382 12 6 8.9549 -0.4293 2.6773 13 1 9.9284 -0.6764 2.2804 14 6 8.5839 -0.8802 3.9367 15 7 7.3972 -0.5794 4.4201 16 14 9.7688 -1.9137 4.9452 17 1 11.0278 -2.1092 4.1825 18 1 10.0677 -1.2187 6.2231 19 1 9.1532 -3.2343 5.2321 20 6 7.6870 1.9981 -1.4389 21 6 7.9552 3.4765 -1.7274 22 6 6.6637 2.8215 -2.2235 23 6 3.5789 -0.7583 -0.0069 24 8 2.2851 -1.0935 -0.0006 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.9595 2.1230 0.0004 29 1 6.1629 -0.1611 -0.0022 30 1 9.3633 1.4269 0.6881 31 1 8.6931 -0.0565 -0.0322 32 1 7.2119 0.5504 2.2946 33 1 7.1381 -0.8941 5.3003 34 1 8.2722 1.2632 -1.9918 35 1 7.8775 4.1741 -0.8936 36 1 8.7164 3.7142 -2.4705 37 1 6.5758 2.6286 -3.2927 38 1 5.7365 3.0878 -1.7160 39 1 4.4102 -1.4477 -0.0131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483557027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:37 Heat of formation + Delta-G solvation = -9.723793 kcal Electronic energy + Delta-G solvation = -21504.396442 eV Core-core repulsion = 18220.930534 eV Total energy + Delta-G solvation = -3283.465908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.53584 -40.91655 -38.36745 -36.63114 -35.06468 -34.05287 -33.31355 -32.52585 -29.73617 -27.49261 -26.02700 -24.78158 -23.23717 -23.06287 -22.09354 -21.42681 -20.83215 -19.25959 -18.58498 -17.51805 -17.31686 -17.01681 -16.61383 -16.50435 -15.86184 -15.51431 -15.15866 -14.92673 -14.52875 -14.31909 -14.02684 -13.79644 -13.73747 -13.70464 -13.19372 -12.84747 -12.73579 -12.67670 -12.46724 -12.30565 -12.03533 -11.84921 -11.33974 -11.13901 -11.00453 -10.87953 -10.78872 -9.99229 -9.52925 -9.02390 -7.94573 -5.24729 0.35613 1.04664 1.48543 1.49679 1.59460 1.88181 2.11823 2.34863 2.55933 3.01615 3.40146 3.56223 3.64590 3.68134 3.94442 4.04979 4.11506 4.16530 4.29438 4.44835 4.45120 4.56611 4.62500 4.74505 4.76738 4.82114 4.88511 4.90706 5.04098 5.10177 5.11702 5.29083 5.36428 5.41946 5.50724 5.56267 6.01083 6.25739 6.57167 7.23498 7.33250 8.05710 8.29884 9.28681 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.005541 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.082632 B = 5051.615172 C = 6934.931986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.011 4.011 3 C -0.191 4.191 4 C -0.259 4.259 5 C 0.587 3.413 6 O -0.577 6.577 7 N -0.698 5.698 8 C 0.178 3.822 9 H 0.057 0.943 10 C 0.151 3.849 11 N -0.744 5.744 12 C -0.242 4.242 13 H 0.081 0.919 14 C -0.073 4.073 15 N -0.969 5.969 16 Si 0.973 3.027 17 H -0.264 1.264 18 H -0.298 1.298 19 H -0.293 1.293 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.185 4.185 23 C 0.036 3.964 24 O -0.177 6.177 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.157 0.843 29 H 0.407 0.593 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.373 0.627 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 0.250 -14.704 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.210 4.210 4 C -0.264 4.264 5 C 0.377 3.623 6 O -0.459 6.459 7 N -0.347 5.347 8 C 0.074 3.926 9 H 0.075 0.925 10 C 0.024 3.976 11 N -0.387 5.387 12 C -0.374 4.374 13 H 0.099 0.901 14 C -0.265 4.265 15 N -0.620 5.620 16 Si 0.802 3.198 17 H -0.188 1.188 18 H -0.226 1.226 19 H -0.220 1.220 20 C -0.183 4.183 21 C -0.200 4.200 22 C -0.222 4.222 23 C -0.035 4.035 24 O -0.073 6.073 25 H 0.119 0.881 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.175 0.825 29 H 0.243 0.757 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.205 0.795 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.099 0.901 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -9.577 0.728 -14.679 17.542 hybrid contribution 0.546 -0.469 1.181 1.383 sum -9.031 0.258 -13.498 16.243 Atomic orbital electron populations 1.20529 0.81607 1.05446 1.05134 1.23004 0.95719 0.82770 1.04499 1.22614 0.89985 1.00382 1.08062 1.21561 0.94555 0.94325 1.15940 1.17505 0.83010 0.86847 0.74981 1.90649 1.87655 1.15135 1.52460 1.45724 1.04604 1.10672 1.73734 1.20598 0.83572 0.93872 0.94596 0.92471 1.21045 0.94552 0.95995 0.85993 1.42547 1.17873 1.62721 1.15555 1.19680 0.97181 1.23116 0.97410 0.90120 1.25547 0.98585 1.03274 0.99096 1.69849 1.21524 1.52035 1.18618 0.85082 0.78635 0.77743 0.78322 1.18776 1.22606 1.21986 1.22577 1.04753 0.95639 0.95377 1.22986 0.99789 0.93839 1.03427 1.23192 0.94712 1.04146 1.00107 1.24891 0.84795 0.95196 0.98572 1.83750 1.16564 1.35901 1.71040 0.88115 0.89260 0.87907 0.82516 0.75680 0.94362 0.93754 0.79453 0.94147 0.85731 0.90106 0.86386 0.87764 0.89171 0.74714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.40 71.23 0.74 -0.20 16 2 C -0.01 -0.27 7.28 24.76 0.18 -0.09 16 3 C -0.19 -5.41 10.90 23.65 0.26 -5.15 16 4 C -0.26 -8.18 6.31 -18.99 -0.12 -8.30 16 5 C 0.59 21.26 7.15 86.65 0.62 21.88 16 6 O -0.58 -24.26 14.00 -4.04 -0.06 -24.32 16 7 N -0.70 -23.21 4.49 -445.83 -2.00 -25.21 16 8 C 0.18 6.15 2.43 44.99 0.11 6.26 16 9 H 0.06 2.34 7.33 -2.39 -0.02 2.32 16 10 C 0.15 5.74 5.80 86.38 0.50 6.24 16 11 N -0.74 -36.67 5.43 -343.46 -1.87 -38.53 16 12 C -0.24 -13.10 9.99 84.03 0.84 -12.26 16 13 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 14 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 15 N -0.97 -59.07 13.06 21.65 0.28 -58.79 16 16 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 20 C -0.16 -4.53 5.36 -10.80 -0.06 -4.59 16 21 C -0.16 -4.18 10.18 30.62 0.31 -3.87 16 22 C -0.18 -5.11 9.74 30.62 0.30 -4.81 16 23 C 0.04 0.93 11.61 67.39 0.78 1.71 16 24 O -0.18 -4.46 10.52 4.47 0.05 -4.41 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.41 12.26 7.57 -92.71 -0.70 11.56 16 30 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.37 20.19 7.33 -92.71 -0.68 19.51 16 33 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.12 2.95 8.11 -2.38 -0.02 2.93 16 35 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 36 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.09 3.09 5.02 -2.38 -0.01 3.08 16 39 H 0.24 4.63 7.47 -2.91 -0.02 4.60 16 Total: -1.00 -71.41 333.11 3.06 -68.35 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: -0.30 Total: 42.32 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.93 Total: -6.81 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -3.59 Total: -122.54 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.01 Total: -28.73 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.41 3.06 -68.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483557027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.624 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds