Wall clock time and date at job start Tue Mar 31 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35134 * 126.44167 * 2 1 4 4 O 1.33927 * 108.76691 * 180.02562 * 3 2 1 5 5 C 1.34917 * 109.38725 * 0.02562 * 4 3 2 6 6 C 1.46656 * 125.99121 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99996 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99641 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99789 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47456 * 180.85371 * 9 8 6 11 11 N 1.46503 * 112.84784 * 292.11123 * 10 9 8 12 12 C 1.36933 * 119.99795 * 294.87848 * 11 10 9 13 13 H 1.08000 * 120.00272 * 353.69309 * 12 11 10 14 14 C 1.38819 * 119.99917 * 173.69126 * 12 11 10 15 15 N 1.31617 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99814 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47114 * 60.00201 * 16 14 12 18 18 H 1.48498 * 109.47020 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47203 * 299.99805 * 16 14 12 20 20 C 1.53775 * 113.61910 * 160.91194 * 10 9 8 21 21 C 1.53959 * 87.02210 * 220.04809 * 20 10 9 22 22 C 1.53781 * 87.11083 * 25.36192 * 21 20 10 23 23 C 1.36546 * 108.02264 * 0.02562 * 5 4 3 24 24 H 1.09004 * 109.46680 * 269.97368 * 1 2 3 25 25 H 1.09001 * 109.47292 * 29.96789 * 1 2 3 26 26 H 1.08996 * 109.47159 * 149.97306 * 1 2 3 27 27 H 1.07998 * 125.61469 * 0.04110 * 3 2 1 28 28 H 0.96997 * 120.00455 * 359.97438 * 8 6 5 29 29 H 1.09001 * 109.47268 * 300.85202 * 9 8 6 30 30 H 1.08997 * 109.47371 * 60.85316 * 9 8 6 31 31 H 0.96998 * 120.00235 * 114.88736 * 11 10 9 32 32 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 33 33 H 1.09000 * 113.61766 * 334.56643 * 20 10 9 34 34 H 1.09007 * 113.61665 * 105.47071 * 20 10 9 35 35 H 1.08998 * 113.53700 * 270.81143 * 21 20 10 36 36 H 1.09003 * 113.66823 * 139.92918 * 21 20 10 37 37 H 1.08996 * 113.61415 * 220.09568 * 22 21 20 38 38 H 1.09003 * 113.61501 * 89.18275 * 22 21 20 39 39 H 1.07994 * 126.64740 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6261 -0.6681 -0.0015 6 6 4.8379 -1.4941 -0.0029 7 8 4.7471 -2.7076 -0.0041 8 7 6.0521 -0.9091 -0.0028 9 6 7.2626 -1.7342 -0.0036 10 6 8.4964 -0.8297 0.0182 11 7 8.6648 -0.0674 -1.2215 12 6 8.9238 -0.7204 -2.3969 13 1 9.1049 -1.7851 -2.3946 14 6 8.9536 -0.0138 -3.5914 15 7 8.7334 1.2838 -3.5942 16 14 9.3062 -0.9047 -5.1950 17 1 8.2723 -1.9466 -5.4201 18 1 9.2811 0.0674 -6.3172 19 1 10.6449 -1.5433 -5.1225 20 6 9.7768 -1.5452 0.4802 21 6 10.1186 -0.2603 1.2564 22 6 8.6086 0.0288 1.2893 23 6 2.3408 -1.1292 -0.0021 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.9770 2.1146 0.0006 28 1 6.1245 0.0582 -0.0022 29 1 7.2663 -2.3749 0.8782 30 1 7.2808 -2.3518 -0.9015 31 1 8.5931 0.8999 -1.2096 32 1 8.7546 1.7775 -4.4288 33 1 9.5887 -2.4059 1.1219 34 1 10.4714 -1.7643 -0.3308 35 1 10.6889 0.4623 0.6727 36 1 10.5492 -0.4451 2.2406 37 1 8.3614 1.0784 1.1304 38 1 8.1004 -0.4010 2.1525 39 1 2.0267 -2.1624 -0.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484647737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:18 Heat of formation + Delta-G solvation = 5.783315 kcal Electronic energy + Delta-G solvation = -21618.634434 eV Core-core repulsion = 18335.840964 eV Total energy + Delta-G solvation = -3282.793469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.62907 -39.43871 -38.32083 -34.44267 -33.78645 -33.26059 -30.63865 -29.99316 -27.87507 -26.81197 -25.29925 -24.01178 -23.02560 -21.46769 -21.05744 -19.66105 -18.33343 -17.72987 -17.10732 -16.29449 -16.22222 -15.62102 -15.11847 -14.48046 -14.40295 -14.04540 -13.61962 -13.49510 -13.30710 -13.22578 -12.96905 -12.70560 -12.61676 -12.08362 -11.80835 -11.76296 -11.25105 -11.01481 -10.83802 -10.37613 -10.27559 -10.16813 -9.92138 -9.72247 -9.69863 -9.49158 -8.88928 -8.74863 -8.41300 -7.05094 -5.82706 -3.12740 1.19969 2.32113 2.82424 3.42365 3.44512 3.47202 3.48364 3.59820 4.53660 4.73202 4.76872 4.91794 5.17804 5.23304 5.27261 5.34117 5.42963 5.45570 5.51944 5.62070 5.70419 5.77420 5.88988 5.94847 6.03219 6.12806 6.18666 6.32669 6.37198 6.39089 6.49868 6.67791 6.80243 6.91706 6.96022 7.04592 7.69029 7.88265 8.35929 8.44357 9.47194 10.00561 10.35897 11.39244 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.005164 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.186592 B = 5420.348488 C = 6394.689598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.197 4.197 3 C -0.014 4.014 4 O -0.158 6.158 5 C -0.062 4.062 6 C 0.595 3.405 7 O -0.534 6.534 8 N -0.690 5.690 9 C 0.117 3.883 10 C 0.173 3.827 11 N -0.699 5.699 12 C -0.239 4.239 13 H 0.071 0.929 14 C -0.007 4.007 15 N -0.930 5.930 16 Si 0.905 3.095 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C -0.150 4.150 21 C -0.128 4.128 22 C -0.145 4.145 23 C -0.129 4.129 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.207 0.793 28 H 0.406 0.594 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.734 0.188 10.827 15.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.199 4.199 3 C -0.084 4.084 4 O -0.052 6.052 5 C -0.114 4.114 6 C 0.380 3.620 7 O -0.414 6.414 8 N -0.338 5.338 9 C -0.008 4.008 10 C 0.080 3.920 11 N -0.340 5.340 12 C -0.370 4.370 13 H 0.089 0.911 14 C -0.203 4.203 15 N -0.578 5.578 16 Si 0.736 3.264 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.190 4.190 21 C -0.165 4.165 22 C -0.183 4.183 23 C -0.150 4.150 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.223 0.777 28 H 0.241 0.759 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.221 0.779 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.450 -0.579 10.645 14.928 hybrid contribution -0.013 0.325 -1.102 1.149 sum -10.462 -0.253 9.543 14.163 Atomic orbital electron populations 1.20152 0.88841 1.02728 1.02068 1.20446 0.97532 0.92501 1.09399 1.24157 0.80131 0.99949 1.04186 1.84107 1.29145 1.21821 1.70149 1.22275 0.96430 0.80465 1.12254 1.16573 0.81474 0.86320 0.77665 1.90839 1.86111 1.12300 1.52135 1.45712 1.05042 1.11253 1.71802 1.21987 0.83665 0.93831 1.01346 1.20825 0.91451 0.92252 0.87515 1.42061 1.84740 1.05480 1.01679 1.19064 1.40469 0.92906 0.84516 0.91127 1.24726 1.02278 0.95721 0.97605 1.69643 1.55912 1.05952 1.26290 0.86306 0.78147 0.78491 0.83494 1.21203 1.21722 1.21178 1.23338 0.99668 0.96199 0.99783 1.22660 0.95903 0.98775 0.99198 1.23151 0.97233 1.00204 0.97727 1.21779 0.90607 1.00387 1.02206 0.91469 0.91571 0.91401 0.77676 0.75891 0.92293 0.90896 0.77882 0.93428 0.91261 0.90635 0.90022 0.92692 0.91605 0.90412 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.39 36.01 0.37 -0.29 16 2 C -0.20 -2.32 6.14 -104.93 -0.64 -2.96 16 3 C -0.01 -0.16 12.00 29.63 0.36 0.19 16 4 O -0.16 -2.35 10.40 5.00 0.05 -2.30 16 5 C -0.06 -1.01 7.13 -36.80 -0.26 -1.27 16 6 C 0.59 11.09 7.78 -12.86 -0.10 10.99 16 7 O -0.53 -11.23 16.86 5.20 0.09 -11.15 16 8 N -0.69 -12.51 5.42 -61.63 -0.33 -12.85 16 9 C 0.12 2.20 5.08 -4.04 -0.02 2.18 16 10 C 0.17 3.21 0.80 -131.01 -0.10 3.10 16 11 N -0.70 -16.20 5.18 -46.48 -0.24 -16.44 16 12 C -0.24 -6.31 9.04 -15.06 -0.14 -6.45 16 13 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 14 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 15 N -0.93 -27.16 13.07 55.49 0.73 -26.43 16 16 Si 0.90 22.27 29.55 -169.99 -5.02 17.25 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C -0.15 -2.54 7.29 -25.83 -0.19 -2.73 16 21 C -0.13 -1.98 8.00 -25.83 -0.21 -2.19 16 22 C -0.15 -2.25 7.05 -25.92 -0.18 -2.43 16 23 C -0.13 -1.85 10.57 -39.39 -0.42 -2.27 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.21 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.41 7.13 8.06 -40.82 -0.33 6.80 16 29 H 0.06 1.01 8.02 -51.93 -0.42 0.60 16 30 H 0.07 1.57 7.80 -51.93 -0.41 1.16 16 31 H 0.39 9.58 7.87 -40.82 -0.32 9.26 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.07 1.03 8.01 -51.93 -0.42 0.62 16 34 H 0.07 1.44 7.87 -51.92 -0.41 1.03 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.16 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -30.96 335.36 -6.95 -37.91 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.64 Total: 13.37 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.63 Total: -4.41 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.15 Total: -55.72 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.14 Total: -13.44 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.96 -6.95 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484647737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.692 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds