Wall clock time and date at job start Tue Mar 31 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35134 * 126.44167 * 2 1 4 4 O 1.33927 * 108.76691 * 180.02562 * 3 2 1 5 5 C 1.34917 * 109.38725 * 0.02562 * 4 3 2 6 6 C 1.46656 * 125.99121 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99996 * 180.02562 * 6 5 4 8 8 N 1.34774 * 119.99641 * 0.02562 * 6 5 4 9 9 C 1.46500 * 119.99789 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47456 * 180.85371 * 9 8 6 11 11 N 1.46503 * 112.84784 * 292.11123 * 10 9 8 12 12 C 1.36933 * 119.99795 * 294.87848 * 11 10 9 13 13 H 1.08000 * 120.00272 * 353.69309 * 12 11 10 14 14 C 1.38819 * 119.99917 * 173.69126 * 12 11 10 15 15 N 1.31617 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99814 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47114 * 60.00201 * 16 14 12 18 18 H 1.48498 * 109.47020 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47203 * 299.99805 * 16 14 12 20 20 C 1.53775 * 113.61910 * 160.91194 * 10 9 8 21 21 C 1.53959 * 87.02210 * 220.04809 * 20 10 9 22 22 C 1.53781 * 87.11083 * 25.36192 * 21 20 10 23 23 C 1.36546 * 108.02264 * 0.02562 * 5 4 3 24 24 H 1.09004 * 109.46680 * 269.97368 * 1 2 3 25 25 H 1.09001 * 109.47292 * 29.96789 * 1 2 3 26 26 H 1.08996 * 109.47159 * 149.97306 * 1 2 3 27 27 H 1.07998 * 125.61469 * 0.04110 * 3 2 1 28 28 H 0.96997 * 120.00455 * 359.97438 * 8 6 5 29 29 H 1.09001 * 109.47268 * 300.85202 * 9 8 6 30 30 H 1.08997 * 109.47371 * 60.85316 * 9 8 6 31 31 H 0.96998 * 120.00235 * 114.88736 * 11 10 9 32 32 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 33 33 H 1.09000 * 113.61766 * 334.56643 * 20 10 9 34 34 H 1.09007 * 113.61665 * 105.47071 * 20 10 9 35 35 H 1.08998 * 113.53700 * 270.81143 * 21 20 10 36 36 H 1.09003 * 113.66823 * 139.92918 * 21 20 10 37 37 H 1.08996 * 113.61415 * 220.09568 * 22 21 20 38 38 H 1.09003 * 113.61501 * 89.18275 * 22 21 20 39 39 H 1.07994 * 126.64740 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 -0.0006 5 6 3.6261 -0.6681 -0.0015 6 6 4.8379 -1.4941 -0.0029 7 8 4.7471 -2.7076 -0.0041 8 7 6.0521 -0.9091 -0.0028 9 6 7.2626 -1.7342 -0.0036 10 6 8.4964 -0.8297 0.0182 11 7 8.6648 -0.0674 -1.2215 12 6 8.9238 -0.7204 -2.3969 13 1 9.1049 -1.7851 -2.3946 14 6 8.9536 -0.0138 -3.5914 15 7 8.7334 1.2838 -3.5942 16 14 9.3062 -0.9047 -5.1950 17 1 8.2723 -1.9466 -5.4201 18 1 9.2811 0.0674 -6.3172 19 1 10.6449 -1.5433 -5.1225 20 6 9.7768 -1.5452 0.4802 21 6 10.1186 -0.2603 1.2564 22 6 8.6086 0.0288 1.2893 23 6 2.3408 -1.1292 -0.0021 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.9770 2.1146 0.0006 28 1 6.1245 0.0582 -0.0022 29 1 7.2663 -2.3749 0.8782 30 1 7.2808 -2.3518 -0.9015 31 1 8.5931 0.8999 -1.2096 32 1 8.7546 1.7775 -4.4288 33 1 9.5887 -2.4059 1.1219 34 1 10.4714 -1.7643 -0.3308 35 1 10.6889 0.4623 0.6727 36 1 10.5492 -0.4451 2.2406 37 1 8.3614 1.0784 1.1304 38 1 8.1004 -0.4010 2.1525 39 1 2.0267 -2.1624 -0.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484647737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:16 Heat of formation + Delta-G solvation = -15.184096 kcal Electronic energy + Delta-G solvation = -21619.543649 eV Core-core repulsion = 18335.840964 eV Total energy + Delta-G solvation = -3283.702684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.69206 -40.90179 -39.77975 -35.65161 -35.23165 -34.97707 -32.03148 -31.61516 -29.11110 -27.86094 -26.73578 -25.80791 -24.38986 -22.85562 -22.15025 -20.94634 -19.74984 -19.18325 -18.89132 -17.44181 -17.35090 -17.12315 -16.66195 -16.10636 -15.85859 -15.61170 -15.16645 -14.94371 -14.39268 -14.27295 -14.08017 -13.93691 -13.71805 -13.50604 -13.10446 -12.97813 -12.89693 -12.60380 -12.54538 -12.22301 -11.94486 -11.65124 -11.53113 -11.42267 -10.94544 -10.77973 -10.73247 -10.16546 -9.52793 -9.00587 -7.94996 -5.22214 0.02652 1.34417 1.44365 1.46210 1.51279 1.70679 2.09519 2.28653 2.53849 3.36654 3.67846 3.72970 3.79864 3.83214 3.96172 4.03106 4.07735 4.20822 4.34901 4.58088 4.67428 4.80104 4.86152 4.89778 4.90239 4.92792 4.98380 5.05178 5.09025 5.11942 5.26027 5.37479 5.42720 5.52644 5.59524 5.69221 5.86857 6.29009 6.46548 7.00835 7.35068 8.08653 8.32401 9.27436 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014896 B = 0.005164 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.186592 B = 5420.348488 C = 6394.689598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.204 4.204 3 C 0.000 4.000 4 O -0.172 6.172 5 C -0.103 4.103 6 C 0.592 3.408 7 O -0.569 6.569 8 N -0.689 5.689 9 C 0.125 3.875 10 C 0.156 3.844 11 N -0.705 5.705 12 C -0.227 4.227 13 H 0.068 0.932 14 C -0.066 4.066 15 N -0.962 5.962 16 Si 0.958 3.042 17 H -0.288 1.288 18 H -0.295 1.295 19 H -0.278 1.278 20 C -0.147 4.147 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.251 0.749 28 H 0.409 0.591 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.377 0.623 32 H 0.250 0.750 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.104 0.896 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 0.622 12.355 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.205 4.205 3 C -0.069 4.069 4 O -0.068 6.068 5 C -0.154 4.154 6 C 0.379 3.621 7 O -0.451 6.451 8 N -0.336 5.336 9 C -0.001 4.001 10 C 0.065 3.935 11 N -0.345 5.345 12 C -0.359 4.359 13 H 0.086 0.914 14 C -0.258 4.258 15 N -0.613 5.613 16 Si 0.788 3.212 17 H -0.215 1.215 18 H -0.221 1.221 19 H -0.204 1.204 20 C -0.187 4.187 21 C -0.156 4.156 22 C -0.167 4.167 23 C -0.146 4.146 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.267 0.733 28 H 0.244 0.756 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.210 0.790 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.122 0.878 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.699 -0.170 12.209 16.910 hybrid contribution 0.274 0.183 -1.495 1.531 sum -11.425 0.013 10.714 15.663 Atomic orbital electron populations 1.20257 0.86104 1.03865 1.03334 1.20861 0.99319 0.91351 1.08967 1.25152 0.78744 1.01873 1.01173 1.84086 1.31070 1.20989 1.70616 1.21874 0.95947 0.81294 1.16334 1.16883 0.82187 0.86280 0.76742 1.90797 1.86767 1.13716 1.53845 1.45696 1.04945 1.11235 1.71773 1.21860 0.84013 0.93728 1.00461 1.21152 0.92001 0.93247 0.87137 1.42108 1.84675 1.05181 1.02515 1.19307 1.38040 0.92791 0.85743 0.91406 1.25351 1.03809 0.96420 1.00251 1.69768 1.58229 1.07011 1.26271 0.85442 0.78053 0.77252 0.80417 1.21503 1.22140 1.20375 1.23351 0.97730 0.97923 0.99648 1.22582 0.95798 0.97033 1.00211 1.23116 0.97411 0.99692 0.96468 1.22077 0.90538 1.01481 1.00471 0.90058 0.89503 0.91266 0.73294 0.75608 0.90351 0.94482 0.79036 0.94159 0.88526 0.93207 0.92020 0.89423 0.91701 0.87760 0.82338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.39 71.24 0.74 -0.30 16 2 C -0.20 -4.30 6.14 -20.06 -0.12 -4.42 16 3 C 0.00 0.00 12.00 67.10 0.81 0.80 16 4 O -0.17 -4.96 10.40 -5.04 -0.05 -5.01 16 5 C -0.10 -3.36 7.13 24.07 0.17 -3.19 16 6 C 0.59 22.55 7.78 86.44 0.67 23.22 16 7 O -0.57 -24.59 16.86 -4.32 -0.07 -24.66 16 8 N -0.69 -25.27 5.42 -467.12 -2.53 -27.80 16 9 C 0.13 4.69 5.08 86.38 0.44 5.13 16 10 C 0.16 5.73 0.80 4.13 0.00 5.73 16 11 N -0.71 -33.20 5.18 -300.96 -1.56 -34.76 16 12 C -0.23 -12.22 9.04 84.04 0.76 -11.46 16 13 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 14 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 15 N -0.96 -57.44 13.07 21.65 0.28 -57.15 16 16 Si 0.96 46.66 29.55 68.60 2.03 48.69 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 18 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 C -0.15 -4.79 7.29 31.18 0.23 -4.56 16 21 C -0.12 -3.43 8.00 31.18 0.25 -3.18 16 22 C -0.13 -3.73 7.05 31.12 0.22 -3.51 16 23 C -0.12 -3.49 10.57 22.39 0.24 -3.26 16 24 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.25 2.49 8.06 -2.91 -0.02 2.47 16 28 H 0.41 14.48 8.06 -92.71 -0.75 13.73 16 29 H 0.08 2.62 8.02 -2.39 -0.02 2.60 16 30 H 0.04 1.64 7.80 -2.39 -0.02 1.62 16 31 H 0.38 19.06 7.87 -92.71 -0.73 18.33 16 32 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.10 2.63 8.01 -2.39 -0.02 2.61 16 34 H 0.05 1.88 7.87 -2.38 -0.02 1.86 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.92 8.09 -2.39 -0.02 1.90 16 38 H 0.10 2.51 8.10 -2.39 -0.02 2.49 16 39 H 0.16 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -69.01 335.36 2.55 -66.46 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.41 Total: 36.49 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.87 Total: -2.25 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -3.81 Total: -119.72 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.13 Total: -29.67 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -69.01 2.55 -66.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484647737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.275 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds