Wall clock time and date at job start Tue Mar 31 2020 01:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34180 * 127.01862 * 2 1 4 4 O 1.34220 * 109.11779 * 180.02562 * 3 2 1 5 5 C 1.33645 * 110.91060 * 359.75910 * 4 3 2 6 6 C 1.36417 * 108.39824 * 0.39138 * 5 4 3 7 7 C 1.47382 * 127.19190 * 179.89986 * 6 5 4 8 8 O 1.21613 * 119.99548 * 179.68156 * 7 6 5 9 9 N 1.34773 * 120.00108 * 359.67530 * 7 6 5 10 10 C 1.46500 * 120.00071 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.84640 * 336.19080 * 10 9 7 12 12 C 1.53778 * 113.69512 * 107.46146 * 10 9 7 13 13 C 1.53784 * 87.08081 * 89.12825 * 12 10 9 14 14 H 1.09004 * 113.61451 * 270.88641 * 13 12 10 15 15 C 1.52992 * 113.61673 * 139.98135 * 13 12 10 16 16 N 1.46503 * 109.47166 * 87.50094 * 15 13 12 17 17 C 1.36933 * 119.99926 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00242 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99993 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47667 * 89.99635 * 21 19 17 23 23 H 1.48504 * 109.46936 * 209.99787 * 21 19 17 24 24 H 1.48506 * 109.47134 * 329.99380 * 21 19 17 25 25 C 1.53778 * 113.61391 * 205.00280 * 10 9 7 26 26 H 1.08997 * 109.47430 * 269.97925 * 1 2 3 27 27 H 1.09008 * 109.47040 * 29.97879 * 1 2 3 28 28 H 1.09004 * 109.47154 * 149.97624 * 1 2 3 29 29 H 1.07996 * 125.44606 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.80260 * 180.26544 * 5 4 3 31 31 H 0.97005 * 119.99999 * 0.02562 * 9 7 6 32 32 H 1.08993 * 113.61229 * 334.58149 * 12 10 9 33 33 H 1.09000 * 113.61263 * 203.67798 * 12 10 9 34 34 H 1.08996 * 109.47544 * 207.50317 * 15 13 12 35 35 H 1.09007 * 109.47088 * 327.50753 * 15 13 12 36 36 H 0.97004 * 120.00029 * 0.02562 * 16 15 13 37 37 H 0.96992 * 120.00182 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.61879 * 156.24852 * 25 10 9 39 39 H 1.08999 * 113.61887 * 25.33959 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 0.0043 6 6 2.3923 -1.1738 -0.0006 7 6 1.9914 -2.5920 0.0001 8 8 0.8125 -2.8906 0.0011 9 7 2.9312 -3.5579 -0.0006 10 6 2.5328 -4.9677 -0.0005 11 1 1.5335 -5.1250 0.4056 12 6 2.7705 -5.6772 -1.3440 13 6 4.1768 -6.0197 -0.8246 14 1 4.9234 -5.2586 -1.0514 15 6 4.6373 -7.4326 -1.1885 16 7 5.2816 -7.4126 -2.5041 17 6 5.7764 -8.5707 -3.0418 18 1 5.6921 -9.4987 -2.4959 19 6 6.3874 -8.5516 -4.2881 20 7 6.4906 -7.4205 -4.9532 21 14 7.0617 -10.1315 -5.0219 22 1 6.0042 -10.7948 -5.8262 23 1 8.2221 -9.8166 -5.8936 24 1 7.4953 -11.0392 -3.9294 25 6 3.5944 -5.9079 0.5943 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.9895 2.1011 0.0004 30 1 4.5702 -1.2607 0.0090 31 1 3.8716 -3.3197 -0.0011 32 1 2.7735 -5.0021 -2.1997 33 1 2.1360 -6.5505 -1.4948 34 1 5.3475 -7.7870 -0.4415 35 1 3.7757 -8.0998 -1.2161 36 1 5.3577 -6.5790 -2.9943 37 1 6.9179 -7.4071 -5.8239 38 1 3.1853 -6.8444 0.9733 39 1 4.2626 -5.4191 1.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485693752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:01 Heat of formation + Delta-G solvation = 4.332852 kcal Electronic energy + Delta-G solvation = -20794.131953 eV Core-core repulsion = 17511.275587 eV Total energy + Delta-G solvation = -3282.856366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.80387 -40.06906 -38.19149 -34.56034 -34.02670 -33.28678 -31.10750 -30.36797 -27.44407 -26.85009 -25.50474 -24.24183 -23.06396 -21.49338 -20.82672 -20.31131 -19.04295 -18.21681 -17.04981 -16.45068 -16.19672 -15.83853 -15.08372 -14.81879 -14.79133 -14.29311 -14.01862 -13.53437 -13.45496 -13.33715 -13.23711 -12.77342 -12.71471 -12.35972 -12.12638 -11.74496 -11.63432 -11.03264 -10.82844 -10.49108 -10.34206 -10.10016 -10.02768 -9.82789 -9.77429 -9.60464 -9.03520 -8.92397 -8.83433 -6.89544 -5.75273 -3.03425 1.12150 1.79606 2.66935 3.02964 3.23792 3.44276 3.49254 3.50920 4.26590 4.38737 4.58591 4.66351 4.78748 4.82751 5.03608 5.10974 5.14472 5.18518 5.51542 5.58523 5.59917 5.68684 5.73326 5.80740 5.87173 5.93713 6.01418 6.10607 6.22973 6.26201 6.31529 6.42743 6.63354 6.69918 6.79051 6.93816 7.43384 7.71031 8.15018 8.44027 9.54958 10.14146 10.48524 11.47758 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.003044 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.747445 B = 9196.178721 C = 9675.662337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.132 4.132 3 C -0.049 4.049 4 O -0.172 6.172 5 C 0.024 3.976 6 C -0.234 4.234 7 C 0.589 3.411 8 O -0.535 6.535 9 N -0.706 5.706 10 C 0.117 3.883 11 H 0.100 0.900 12 C -0.139 4.139 13 C -0.114 4.114 14 H 0.087 0.913 15 C 0.162 3.838 16 N -0.732 5.732 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.138 4.138 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.207 0.793 30 H 0.212 0.788 31 H 0.398 0.602 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.095 0.905 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 16.589 13.446 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C -0.115 4.115 4 O -0.067 6.067 5 C -0.047 4.047 6 C -0.238 4.238 7 C 0.377 3.623 8 O -0.412 6.412 9 N -0.356 5.356 10 C 0.012 3.988 11 H 0.118 0.882 12 C -0.177 4.177 13 C -0.132 4.132 14 H 0.105 0.895 15 C 0.035 3.965 16 N -0.376 5.376 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.176 4.176 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.224 0.776 30 H 0.228 0.772 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.831 16.385 13.430 22.953 hybrid contribution 0.922 -0.605 -0.745 1.330 sum -7.910 15.780 12.685 21.737 Atomic orbital electron populations 1.20240 0.88318 1.03285 1.02521 1.21433 0.97325 0.90366 1.04283 1.23721 0.79682 0.99708 1.08360 1.83786 1.29665 1.22339 1.70865 1.24475 0.98874 0.81167 1.00166 1.21448 0.93405 0.94314 1.14641 1.17230 0.85592 0.83627 0.75882 1.90758 1.17320 1.83250 1.49920 1.45526 1.09215 1.05744 1.75126 1.21945 0.99352 0.79122 0.98378 0.88153 1.23420 0.97353 1.00398 0.96563 1.22766 0.96360 0.99505 0.94604 0.89483 1.20636 0.94956 0.92302 0.88621 1.42352 1.69525 1.08937 1.16796 1.19246 1.29874 0.88073 0.99784 0.91241 1.24741 1.01898 0.96967 0.97513 1.69658 1.49567 1.24502 1.14591 0.86190 0.78321 0.82767 0.78927 1.21738 1.21792 1.20786 1.23320 0.97593 0.99490 0.97231 0.91239 0.91741 0.89843 0.77635 0.77166 0.76738 0.91291 0.89038 0.96410 0.96192 0.78345 0.93561 0.88623 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 10.00 36.01 0.36 -0.47 16 2 C -0.13 -1.40 6.37 -102.50 -0.65 -2.05 16 3 C -0.05 -0.41 11.96 29.30 0.35 -0.06 16 4 O -0.17 -1.57 10.52 7.66 0.08 -1.49 16 5 C 0.02 0.21 11.61 30.08 0.35 0.56 16 6 C -0.23 -2.67 6.31 -103.28 -0.65 -3.32 16 7 C 0.59 7.94 7.81 -12.54 -0.10 7.84 16 8 O -0.53 -8.94 15.01 5.27 0.08 -8.86 16 9 N -0.71 -8.18 5.26 -54.11 -0.28 -8.46 16 10 C 0.12 1.49 4.32 -67.12 -0.29 1.20 16 11 H 0.10 1.35 7.46 -51.93 -0.39 0.97 16 12 C -0.14 -2.07 7.43 -25.92 -0.19 -2.26 16 13 C -0.11 -1.73 3.63 -89.81 -0.33 -2.06 16 14 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 15 C 0.16 3.21 6.10 -4.04 -0.02 3.19 16 16 N -0.73 -18.61 5.60 -59.91 -0.34 -18.94 16 17 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 20 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 21 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.14 -1.63 7.39 -25.92 -0.19 -1.83 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.08 0.99 6.92 -51.93 -0.36 0.63 16 29 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.21 1.08 7.47 -52.48 -0.39 0.69 16 31 H 0.40 3.61 7.67 -40.82 -0.31 3.30 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.40 7.84 -51.93 -0.41 0.00 16 36 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 332.84 15.07 5.02 5.02 Total: -1.00 -34.52 332.84 -6.87 -41.38 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.51 Total: 8.25 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.61 Total: -6.71 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.10 Total: -55.13 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.16 Total: -10.36 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.52 -6.87 -41.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485693752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.718 kcal (2) G-P(sol) polarization free energy of solvation -34.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds