Wall clock time and date at job start Tue Mar 31 2020 01:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34180 * 127.01862 * 2 1 4 4 O 1.34220 * 109.11779 * 180.02562 * 3 2 1 5 5 C 1.33645 * 110.91060 * 359.75910 * 4 3 2 6 6 C 1.36417 * 108.39824 * 0.39138 * 5 4 3 7 7 C 1.47382 * 127.19190 * 179.89986 * 6 5 4 8 8 O 1.21613 * 119.99548 * 179.68156 * 7 6 5 9 9 N 1.34773 * 120.00108 * 359.67530 * 7 6 5 10 10 C 1.46500 * 120.00071 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.84640 * 336.19080 * 10 9 7 12 12 C 1.53778 * 113.69512 * 107.46146 * 10 9 7 13 13 C 1.53784 * 87.08081 * 89.12825 * 12 10 9 14 14 H 1.09004 * 113.61451 * 270.88641 * 13 12 10 15 15 C 1.52992 * 113.61673 * 139.98135 * 13 12 10 16 16 N 1.46503 * 109.47166 * 87.50094 * 15 13 12 17 17 C 1.36933 * 119.99926 * 180.02562 * 16 15 13 18 18 H 1.08001 * 120.00242 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99993 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99943 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47667 * 89.99635 * 21 19 17 23 23 H 1.48504 * 109.46936 * 209.99787 * 21 19 17 24 24 H 1.48506 * 109.47134 * 329.99380 * 21 19 17 25 25 C 1.53778 * 113.61391 * 205.00280 * 10 9 7 26 26 H 1.08997 * 109.47430 * 269.97925 * 1 2 3 27 27 H 1.09008 * 109.47040 * 29.97879 * 1 2 3 28 28 H 1.09004 * 109.47154 * 149.97624 * 1 2 3 29 29 H 1.07996 * 125.44606 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.80260 * 180.26544 * 5 4 3 31 31 H 0.97005 * 119.99999 * 0.02562 * 9 7 6 32 32 H 1.08993 * 113.61229 * 334.58149 * 12 10 9 33 33 H 1.09000 * 113.61263 * 203.67798 * 12 10 9 34 34 H 1.08996 * 109.47544 * 207.50317 * 15 13 12 35 35 H 1.09007 * 109.47088 * 327.50753 * 15 13 12 36 36 H 0.97004 * 120.00029 * 0.02562 * 16 15 13 37 37 H 0.96992 * 120.00182 * 179.97438 * 20 19 17 38 38 H 1.08998 * 113.61879 * 156.24852 * 25 10 9 39 39 H 1.08999 * 113.61887 * 25.33959 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 -0.0006 5 6 3.6623 -0.6758 0.0043 6 6 2.3923 -1.1738 -0.0006 7 6 1.9914 -2.5920 0.0001 8 8 0.8125 -2.8906 0.0011 9 7 2.9312 -3.5579 -0.0006 10 6 2.5328 -4.9677 -0.0005 11 1 1.5335 -5.1250 0.4056 12 6 2.7705 -5.6772 -1.3440 13 6 4.1768 -6.0197 -0.8246 14 1 4.9234 -5.2586 -1.0514 15 6 4.6373 -7.4326 -1.1885 16 7 5.2816 -7.4126 -2.5041 17 6 5.7764 -8.5707 -3.0418 18 1 5.6921 -9.4987 -2.4959 19 6 6.3874 -8.5516 -4.2881 20 7 6.4906 -7.4205 -4.9532 21 14 7.0617 -10.1315 -5.0219 22 1 6.0042 -10.7948 -5.8262 23 1 8.2221 -9.8166 -5.8936 24 1 7.4953 -11.0392 -3.9294 25 6 3.5944 -5.9079 0.5943 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 1.9895 2.1011 0.0004 30 1 4.5702 -1.2607 0.0090 31 1 3.8716 -3.3197 -0.0011 32 1 2.7735 -5.0021 -2.1997 33 1 2.1360 -6.5505 -1.4948 34 1 5.3475 -7.7870 -0.4415 35 1 3.7757 -8.0998 -1.2161 36 1 5.3577 -6.5790 -2.9943 37 1 6.9179 -7.4071 -5.8239 38 1 3.1853 -6.8444 0.9733 39 1 4.2626 -5.4191 1.3032 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485693752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:59 Heat of formation + Delta-G solvation = -19.688372 kcal Electronic energy + Delta-G solvation = -20795.173591 eV Core-core repulsion = 17511.275587 eV Total energy + Delta-G solvation = -3283.898004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.51097 -41.15717 -39.34397 -36.34403 -34.79835 -34.54632 -32.88308 -31.34362 -28.49028 -28.13940 -26.63167 -25.59822 -24.52162 -22.91842 -21.60049 -21.18365 -20.25673 -19.05551 -19.01033 -17.23474 -17.15712 -16.78651 -16.66943 -15.94853 -15.93213 -15.55848 -15.46718 -15.07950 -14.49133 -14.46320 -14.27101 -13.97879 -13.68074 -13.42370 -13.38873 -13.11498 -12.92049 -12.69976 -12.45410 -12.17498 -11.92696 -11.75096 -11.36217 -11.15060 -11.09310 -10.85680 -10.60439 -10.04929 -9.60948 -8.97472 -7.94936 -5.23062 0.34786 1.07619 1.47035 1.48847 1.57205 1.98407 2.14967 2.28836 2.56318 3.38095 3.57365 3.59025 3.61992 3.66855 3.93794 3.94944 4.06693 4.33476 4.34382 4.49919 4.57127 4.75835 4.79846 4.85006 4.88567 4.90606 4.96349 4.99032 5.05058 5.07043 5.15547 5.27375 5.36183 5.49398 5.51138 5.67022 5.99708 6.28062 6.51449 7.17910 7.33984 8.12130 8.34353 9.28717 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.003044 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.747445 B = 9196.178721 C = 9675.662337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.167 4.167 3 C -0.033 4.033 4 O -0.174 6.174 5 C 0.044 3.956 6 C -0.271 4.271 7 C 0.586 3.414 8 O -0.578 6.578 9 N -0.696 5.696 10 C 0.126 3.874 11 H 0.094 0.906 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.088 0.912 15 C 0.160 3.840 16 N -0.746 5.746 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.268 1.268 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.244 0.756 30 H 0.246 0.754 31 H 0.412 0.588 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.107 0.893 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 17.253 14.778 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.169 4.169 3 C -0.098 4.098 4 O -0.068 6.068 5 C -0.026 4.026 6 C -0.275 4.275 7 C 0.375 3.625 8 O -0.458 6.458 9 N -0.347 5.347 10 C 0.021 3.979 11 H 0.112 0.888 12 C -0.183 4.183 13 C -0.129 4.129 14 H 0.107 0.893 15 C 0.033 3.967 16 N -0.388 5.388 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.193 1.193 25 C -0.153 4.153 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.260 0.740 30 H 0.262 0.738 31 H 0.249 0.751 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.896 17.041 14.809 23.918 hybrid contribution 0.611 -0.783 -1.130 1.505 sum -7.285 16.258 13.678 22.461 Atomic orbital electron populations 1.20178 0.88326 1.02903 1.02509 1.21709 0.97880 0.91028 1.06243 1.24357 0.78822 1.00693 1.05928 1.83830 1.30110 1.22403 1.70501 1.25047 0.99014 0.81150 0.97405 1.21474 0.95090 0.93447 1.17530 1.17600 0.85170 0.84725 0.74966 1.90731 1.19057 1.83993 1.52068 1.45426 1.09809 1.05038 1.74383 1.21769 0.99606 0.79806 0.96738 0.88824 1.23430 0.97409 1.00238 0.97186 1.22694 0.96159 0.96739 0.97318 0.89347 1.20829 0.94429 0.95228 0.86167 1.42589 1.69829 1.07757 1.18629 1.19664 1.28972 0.89157 0.99927 0.90729 1.25571 1.03034 1.00105 0.98242 1.69813 1.50924 1.26566 1.14797 0.85146 0.77297 0.79209 0.78156 1.21581 1.22103 1.19327 1.23227 0.96787 0.99822 0.95454 0.91112 0.89323 0.92931 0.73958 0.73849 0.75083 0.93201 0.89683 0.95897 0.96295 0.79530 0.94046 0.87495 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.00 71.24 0.71 -0.87 16 2 C -0.17 -3.39 6.37 -18.49 -0.12 -3.50 16 3 C -0.03 -0.46 11.96 66.89 0.80 0.34 16 4 O -0.17 -2.72 10.52 4.49 0.05 -2.67 16 5 C 0.04 0.68 11.61 67.39 0.78 1.46 16 6 C -0.27 -6.00 6.31 -18.99 -0.12 -6.12 16 7 C 0.59 15.82 7.81 86.65 0.68 16.50 16 8 O -0.58 -20.05 15.01 -4.07 -0.06 -20.11 16 9 N -0.70 -15.40 5.26 -443.35 -2.33 -17.73 16 10 C 0.13 3.09 4.32 45.52 0.20 3.29 16 11 H 0.09 2.49 7.46 -2.39 -0.02 2.48 16 12 C -0.14 -4.30 7.43 31.12 0.23 -4.07 16 13 C -0.11 -3.24 3.63 -10.27 -0.04 -3.27 16 14 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 15 C 0.16 6.18 6.10 86.38 0.53 6.71 16 16 N -0.75 -37.96 5.60 -343.45 -1.92 -39.89 16 17 C -0.25 -13.82 9.99 84.04 0.84 -12.98 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -59.78 13.06 21.65 0.28 -59.49 16 21 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C -0.11 -2.43 7.39 31.12 0.23 -2.20 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.05 1.33 6.92 -2.39 -0.02 1.31 16 29 H 0.24 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.25 1.69 7.47 -2.91 -0.02 1.67 16 31 H 0.41 6.62 7.67 -92.70 -0.71 5.90 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.63 7.90 -2.39 -0.02 2.61 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.02 0.75 7.84 -2.38 -0.02 0.73 16 36 H 0.37 20.19 7.67 -92.70 -0.71 19.48 16 37 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.89 332.84 2.88 -73.01 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.35 Total: 27.22 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.19 Total: -8.75 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.97 Total: -117.11 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.01 Total: -22.78 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -75.89 2.88 -73.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485693752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.318 kcal (2) G-P(sol) polarization free energy of solvation -75.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds