Wall clock time and date at job start Tue Mar 31 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41386 * 126.57578 * 2 1 4 4 C 1.34512 * 106.83929 * 179.97438 * 3 2 1 5 5 O 1.34301 * 108.41935 * 359.73474 * 4 3 2 6 6 C 1.34298 * 109.47802 * 0.44112 * 5 4 3 7 7 C 1.50698 * 125.78826 * 179.82809 * 6 5 4 8 8 C 1.50707 * 109.47012 * 269.68686 * 7 6 5 9 9 O 1.21277 * 119.99718 * 0.27760 * 8 7 6 10 10 N 1.34780 * 119.99941 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99765 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.46853 * 176.93796 * 11 10 8 13 13 N 1.46501 * 115.54892 * 279.54606 * 12 11 10 14 14 C 1.36946 * 120.00005 * 295.38936 * 13 12 11 15 15 H 1.07993 * 119.99762 * 357.20156 * 14 13 12 16 16 C 1.38813 * 119.99677 * 177.20056 * 14 13 12 17 17 N 1.31621 * 119.99856 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47321 * 59.99782 * 18 16 14 20 20 H 1.48506 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47129 * 299.99398 * 18 16 14 22 22 C 1.52998 * 117.49567 * 133.88082 * 12 11 10 23 23 C 1.52997 * 117.49990 * 65.22237 * 12 11 10 24 24 H 1.09007 * 109.47159 * 270.03797 * 1 2 3 25 25 H 1.08993 * 109.47708 * 30.03926 * 1 2 3 26 26 H 1.08998 * 109.47010 * 150.04523 * 1 2 3 27 27 H 1.07999 * 126.57894 * 359.97438 * 3 2 1 28 28 H 1.08007 * 125.79019 * 180.02562 * 4 3 2 29 29 H 1.09012 * 109.47183 * 149.69120 * 7 6 5 30 30 H 1.08997 * 109.47548 * 29.69189 * 7 6 5 31 31 H 0.96997 * 119.99885 * 0.02562 * 10 8 7 32 32 H 1.08998 * 109.47369 * 296.93828 * 11 10 8 33 33 H 1.09004 * 109.47007 * 56.94146 * 11 10 8 34 34 H 0.97003 * 120.00094 * 115.39305 * 13 12 11 35 35 H 0.97003 * 119.99715 * 180.02562 * 17 16 14 36 36 H 1.08999 * 117.50266 * 359.97438 * 22 12 11 37 37 H 1.09003 * 117.50009 * 145.01858 * 22 12 11 38 38 H 1.09004 * 117.49674 * 214.98151 * 23 12 11 39 39 H 1.08999 * 117.49698 * 359.96847 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6156 0.6812 0.0006 5 8 3.5847 -0.6615 0.0068 6 6 2.3087 -1.0801 0.0005 7 6 1.8523 -2.5163 0.0008 8 6 1.7007 -2.9955 -1.4200 9 8 1.9445 -2.2461 -2.3419 10 7 1.2991 -4.2583 -1.6660 11 6 1.1512 -4.7238 -3.0472 12 6 0.7614 -6.2034 -3.0476 13 7 1.8644 -7.1474 -2.8516 14 6 2.8604 -7.2405 -3.7870 15 1 2.8095 -6.6510 -4.6904 16 6 3.9353 -8.0925 -3.5737 17 7 3.9975 -8.8105 -2.4723 18 14 5.2942 -8.2189 -4.8492 19 1 5.9236 -6.8869 -5.0356 20 1 6.3185 -9.1896 -4.3866 21 1 4.7210 -8.6805 -6.1390 22 6 -0.3804 -6.6328 -3.9711 23 6 -0.6002 -6.5754 -2.4573 24 1 -0.3634 0.0007 1.0277 25 1 -0.3634 0.8895 -0.5144 26 1 -0.3633 -0.8904 -0.5131 27 1 2.0365 2.1691 -0.0004 28 1 4.5060 1.2925 0.0011 29 1 0.8938 -2.5930 0.5143 30 1 2.5902 -3.1320 0.5151 31 1 1.1072 -4.8586 -0.9287 32 1 0.3745 -4.1434 -3.5451 33 1 2.0955 -4.5968 -3.5765 34 1 1.8893 -7.7066 -2.0594 35 1 4.7489 -9.4056 -2.3232 36 1 -0.8541 -5.8613 -4.5780 37 1 -0.3111 -7.6179 -4.4325 38 1 -0.6754 -7.5227 -1.9234 39 1 -1.2181 -5.7662 -2.0682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499344458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:04 Heat of formation + Delta-G solvation = 10.890348 kcal Electronic energy + Delta-G solvation = -21253.323772 eV Core-core repulsion = 17970.751760 eV Total energy + Delta-G solvation = -3282.572012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.56780 -39.37310 -37.50646 -34.26339 -33.74771 -33.02611 -32.06034 -29.71764 -29.03453 -26.95296 -25.36185 -23.90236 -21.98012 -21.48679 -20.48423 -19.63593 -19.04424 -17.24701 -17.01779 -16.93939 -15.81991 -15.64370 -15.38091 -14.95058 -14.24744 -14.17369 -13.79844 -13.46468 -13.19761 -13.08623 -13.05378 -12.73215 -12.62820 -12.33439 -11.93432 -11.81953 -11.42773 -10.99720 -10.98808 -10.88519 -10.30163 -10.27264 -9.75916 -9.75250 -9.58368 -9.34507 -8.89183 -8.62315 -8.31211 -7.08547 -5.84764 -3.15013 1.73476 2.57133 2.87930 2.99652 3.42286 3.46723 3.48125 3.57819 4.41422 4.56992 4.58642 4.86503 4.90330 5.07163 5.16303 5.21637 5.29413 5.29785 5.42446 5.44675 5.55917 5.61056 5.74577 5.80134 5.82555 6.00430 6.05731 6.18238 6.24314 6.40312 6.53833 6.56970 6.66373 6.74219 6.83668 7.18570 7.68031 7.84110 8.33302 8.51610 9.44866 9.97735 10.32820 11.37118 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.004220 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.579909 B = 6633.473660 C = 7621.393905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.171 4.171 3 C -0.212 4.212 4 C -0.039 4.039 5 O -0.170 6.170 6 C 0.012 3.988 7 C -0.064 4.064 8 C 0.510 3.490 9 O -0.538 6.538 10 N -0.710 5.710 11 C 0.148 3.852 12 C 0.129 3.871 13 N -0.688 5.688 14 C -0.240 4.240 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.188 4.188 23 C -0.186 4.186 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.145 0.855 28 H 0.201 0.799 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.401 0.599 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 14.786 7.960 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.172 4.172 3 C -0.231 4.231 4 C -0.107 4.107 5 O -0.065 6.065 6 C -0.039 4.039 7 C -0.103 4.103 8 C 0.295 3.705 9 O -0.415 6.415 10 N -0.360 5.360 11 C 0.023 3.977 12 C 0.034 3.966 13 N -0.328 5.328 14 C -0.371 4.371 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.229 4.229 23 C -0.224 4.224 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.163 0.837 28 H 0.217 0.783 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.235 0.765 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.753 15.096 7.156 18.417 hybrid contribution 0.739 -0.426 -0.134 0.864 sum -7.013 14.669 7.021 17.711 Atomic orbital electron populations 1.20152 0.89429 1.02677 1.01562 1.20114 0.96956 0.91994 1.08154 1.21640 0.92661 0.99594 1.09254 1.23919 0.99664 0.80662 1.06416 1.84006 1.28704 1.22733 1.71079 1.21302 0.81143 0.95059 1.06349 1.20113 1.04002 0.89698 0.96532 1.20257 0.77432 0.82261 0.90531 1.90719 1.49628 1.55098 1.46035 1.45847 1.68136 1.12205 1.09820 1.21255 1.01857 0.92869 0.81758 1.20159 0.84401 0.89347 1.02650 1.41780 1.22563 1.42924 1.25517 1.19130 0.98577 1.20487 0.98879 0.91001 1.24739 0.98596 0.99491 0.97608 1.69644 1.32313 1.30056 1.25934 0.86260 0.81749 0.77417 0.80751 1.21107 1.21645 1.21118 1.23381 1.04502 1.02952 0.92076 1.23078 0.99613 1.02583 0.97121 0.91658 0.91609 0.91794 0.83700 0.78274 0.86232 0.86953 0.76532 0.92475 0.90325 0.77716 0.93353 0.89911 0.88628 0.88982 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.99 36.00 0.36 -0.47 16 2 C -0.17 -2.22 6.16 -104.74 -0.65 -2.87 16 3 C -0.21 -2.53 10.87 -39.70 -0.43 -2.96 16 4 C -0.04 -0.46 12.09 29.42 0.36 -0.11 16 5 O -0.17 -2.55 10.65 5.73 0.06 -2.49 16 6 C 0.01 0.17 5.81 -35.63 -0.21 -0.03 16 7 C -0.06 -0.78 5.85 -29.03 -0.17 -0.95 16 8 C 0.51 8.29 7.82 -10.98 -0.09 8.20 16 9 O -0.54 -11.05 16.03 5.56 0.09 -10.96 16 10 N -0.71 -11.10 5.52 -60.29 -0.33 -11.43 16 11 C 0.15 2.69 5.72 -4.04 -0.02 2.67 16 12 C 0.13 2.40 2.16 -131.82 -0.28 2.12 16 13 N -0.69 -16.30 5.50 -47.23 -0.26 -16.56 16 14 C -0.24 -6.47 9.53 -15.05 -0.14 -6.62 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.19 -3.17 10.11 -26.70 -0.27 -3.44 16 23 C -0.19 -2.82 10.08 -26.70 -0.27 -3.09 16 24 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.67 7.78 -51.93 -0.40 0.26 16 27 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.20 1.56 8.06 -52.48 -0.42 1.13 16 29 H 0.12 1.04 7.76 -51.92 -0.40 0.64 16 30 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 5.39 8.42 -40.82 -0.34 5.05 16 32 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 33 H 0.08 1.71 7.76 -51.93 -0.40 1.31 16 34 H 0.39 9.72 8.03 -40.82 -0.33 9.39 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.08 1.23 8.08 -51.93 -0.42 0.82 16 37 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 340.22 15.07 5.13 5.13 Total: -1.00 -33.46 340.22 -7.17 -40.63 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.64 Total: 12.83 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.91 Total: -7.87 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.13 Total: -54.59 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.15 Total: -13.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.46 -7.17 -40.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499344458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.517 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds