Wall clock time and date at job start Tue Mar 31 2020 00:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.80023 * 2 1 4 4 N 1.46502 * 109.46920 * 56.70345 * 3 2 1 5 5 C 1.36945 * 119.99859 * 179.97438 * 4 3 2 6 6 H 1.07994 * 119.99812 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00029 * 179.97438 * 5 4 3 8 8 N 1.31622 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47006 * 60.00862 * 9 7 5 11 11 H 1.48505 * 109.46812 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47558 * 300.00411 * 9 7 5 13 13 C 1.54608 * 110.74226 * 236.70807 * 2 1 3 14 14 C 1.54005 * 105.04323 * 263.51251 * 13 2 1 15 15 N 1.47478 * 107.08511 * 1.30529 * 14 13 2 16 16 C 1.34780 * 127.03331 * 154.51798 * 15 14 13 17 17 O 1.21615 * 119.99645 * 185.65540 * 16 15 14 18 18 C 1.47378 * 120.00444 * 5.65226 * 16 15 14 19 19 C 1.47019 * 127.19465 * 187.24115 * 18 16 15 20 20 C 1.34178 * 105.95215 * 180.09590 * 19 18 16 21 21 O 1.34216 * 109.12604 * 359.65721 * 20 19 18 22 22 C 1.33650 * 110.90644 * 0.22727 * 21 20 19 23 23 C 1.48117 * 105.93447 * 334.77947 * 15 14 13 24 24 H 1.09004 * 109.46854 * 183.28693 * 1 2 3 25 25 H 1.08994 * 109.47425 * 303.29236 * 1 2 3 26 26 H 1.08999 * 109.46653 * 63.29447 * 1 2 3 27 27 H 1.08993 * 109.47208 * 176.70237 * 3 2 1 28 28 H 1.08996 * 109.47280 * 296.70965 * 3 2 1 29 29 H 0.96996 * 120.00070 * 0.02562 * 4 3 2 30 30 H 0.97003 * 119.99866 * 179.97438 * 8 7 5 31 31 H 1.08996 * 110.33057 * 144.62446 * 13 2 1 32 32 H 1.08995 * 110.41592 * 22.44866 * 13 2 1 33 33 H 1.08997 * 109.91530 * 241.94400 * 14 13 2 34 34 H 1.09003 * 110.07438 * 120.76112 * 14 13 2 35 35 H 1.07996 * 127.02120 * 0.02562 * 19 18 16 36 36 H 1.07999 * 125.44010 * 179.97438 * 20 19 18 37 37 H 1.08004 * 125.80090 * 179.97438 * 22 21 20 38 38 H 1.08996 * 110.66700 * 157.50703 * 23 15 14 39 39 H 1.09004 * 110.65967 * 280.62607 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 7 1.5379 2.1560 1.1545 5 6 1.8880 3.4633 1.3640 6 1 2.5585 3.9593 0.6779 7 6 1.3803 4.1511 2.4575 8 7 0.5627 3.5467 3.2934 9 14 1.8584 5.9341 2.7436 10 1 1.4375 6.7525 1.5782 11 1 1.1873 6.4359 3.9697 12 1 3.3308 6.0311 2.9108 13 6 2.0776 -0.7936 -1.2086 14 6 2.3763 -2.2014 -0.6601 15 7 1.9871 -2.2038 0.7624 16 6 1.6221 -3.2695 1.5023 17 8 1.2261 -3.1120 2.6413 18 6 1.7028 -4.6257 0.9311 19 6 1.2130 -5.8743 1.5333 20 6 1.5069 -6.8467 0.6566 21 8 2.1152 -6.3070 -0.4111 22 6 2.2426 -4.9841 -0.2694 23 6 2.0733 -0.7945 1.2099 24 1 -0.3633 -1.0260 0.0589 25 1 -0.3634 0.5641 0.8589 26 1 -0.3632 0.4618 -0.9181 27 1 3.1614 1.4056 0.0591 28 1 1.7706 1.9340 -0.9180 29 1 0.9360 1.7104 1.7709 30 1 0.2082 4.0272 4.0579 31 1 2.9911 -0.3314 -1.5827 32 1 1.3294 -0.8463 -1.9994 33 1 3.4403 -2.4185 -0.7543 34 1 1.7962 -2.9461 -1.2051 35 1 0.7188 -5.9861 2.4870 36 1 1.2844 -7.8954 0.7868 37 1 2.6963 -4.3129 -0.9837 38 1 1.4489 -0.6309 2.0881 39 1 3.1077 -0.5187 1.4153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500314561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:25 Heat of formation + Delta-G solvation = 3.364690 kcal Electronic energy + Delta-G solvation = -21686.585086 eV Core-core repulsion = 18403.686737 eV Total energy + Delta-G solvation = -3282.898349 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.73996 -40.01900 -37.82705 -34.87334 -33.18344 -32.50654 -30.52896 -30.13035 -29.15935 -26.62763 -25.68460 -24.12402 -22.53197 -22.10439 -21.44011 -19.86856 -18.85191 -17.69545 -16.95123 -16.57897 -16.33182 -15.80470 -15.46086 -14.58137 -14.41749 -14.31245 -13.83193 -13.52105 -13.34451 -13.12712 -12.92059 -12.72924 -12.48999 -12.17797 -12.01321 -11.57033 -11.49785 -10.99419 -10.80369 -10.53197 -10.47788 -10.31836 -10.02636 -9.96775 -9.87739 -9.61107 -9.03215 -8.85792 -8.58675 -6.90115 -5.73387 -3.02677 1.19306 1.89601 2.66116 3.01132 3.34768 3.45952 3.50192 3.51660 4.32366 4.42448 4.58707 4.60264 4.69271 4.88687 4.90464 5.18668 5.27554 5.37425 5.45930 5.47888 5.60910 5.66172 5.74349 5.84884 5.97504 6.02731 6.09857 6.12815 6.16799 6.29406 6.39889 6.53608 6.66680 6.72920 6.76723 6.85926 7.60241 7.71425 8.24336 8.44984 9.56137 10.13451 10.47754 11.49132 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036729 B = 0.003656 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.161032 B = 7656.431465 C = 8111.763664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.169 3.831 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.123 4.123 14 C 0.090 3.910 15 N -0.616 5.616 16 C 0.599 3.401 17 O -0.532 6.532 18 C -0.225 4.225 19 C -0.165 4.165 20 C -0.044 4.044 21 O -0.177 6.177 22 C 0.005 3.995 23 C 0.121 3.879 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.385 0.615 30 H 0.256 0.744 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.160 0.840 36 H 0.208 0.792 37 H 0.218 0.782 38 H 0.091 0.909 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -19.695 -11.340 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.041 3.959 4 N -0.376 5.376 5 C -0.374 4.374 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.162 4.162 14 C -0.033 4.033 15 N -0.350 5.350 16 C 0.389 3.611 17 O -0.410 6.410 18 C -0.229 4.229 19 C -0.185 4.185 20 C -0.110 4.110 21 O -0.073 6.073 22 C -0.064 4.064 23 C -0.001 4.001 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.177 0.823 36 H 0.225 0.775 37 H 0.234 0.766 38 H 0.110 0.890 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.328 -19.702 -10.899 22.760 hybrid contribution 0.003 0.966 0.543 1.108 sum 3.331 -18.735 -10.356 21.665 Atomic orbital electron populations 1.21708 0.93416 1.00691 1.02902 1.21800 0.96675 0.96031 0.93497 1.20620 0.95604 0.87794 0.91849 1.42407 1.56756 1.10890 1.27544 1.19159 1.23005 0.87971 1.07219 0.91267 1.24741 0.99979 0.98299 0.97824 1.69652 1.35868 1.36369 1.16068 0.86275 0.77801 0.84987 0.77129 1.21328 1.21723 1.21308 1.22581 1.02171 0.93378 0.98066 1.22399 0.99660 0.99124 0.82127 1.48653 1.66902 1.08141 1.11300 1.16847 0.77300 0.82140 0.84793 1.90823 1.46433 1.85606 1.18120 1.21569 1.09276 0.94897 0.97167 1.22817 1.03961 0.89983 1.01719 1.23939 1.01231 0.99515 0.86290 1.83803 1.61584 1.21153 1.40713 1.25136 1.00981 0.82088 0.98216 1.22549 1.01831 0.77299 0.98384 0.93706 0.91052 0.92689 0.96101 0.95868 0.77993 0.93415 0.90008 0.90363 0.91260 0.90760 0.82280 0.77534 0.76587 0.89045 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.31 37.16 0.31 -1.81 16 2 C -0.08 -1.22 0.65 -152.82 -0.10 -1.32 16 3 C 0.17 3.24 5.11 -4.04 -0.02 3.22 16 4 N -0.73 -18.14 5.16 -59.91 -0.31 -18.45 16 5 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 9 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 C -0.12 -1.36 6.09 -25.36 -0.15 -1.51 16 14 C 0.09 0.90 5.25 -2.98 -0.02 0.88 16 15 N -0.62 -8.86 3.19 -171.26 -0.55 -9.41 16 16 C 0.60 9.73 7.88 -12.54 -0.10 9.63 16 17 O -0.53 -10.94 17.18 5.26 0.09 -10.85 16 18 C -0.22 -2.87 6.25 -103.28 -0.65 -3.51 16 19 C -0.17 -1.84 11.02 -37.45 -0.41 -2.26 16 20 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 21 O -0.18 -1.64 10.52 7.66 0.08 -1.56 16 22 C 0.01 0.05 10.51 30.08 0.32 0.37 16 23 C 0.12 2.03 5.68 -2.31 -0.01 2.01 16 24 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 25 H 0.07 1.39 6.69 -51.93 -0.35 1.04 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.39 10.18 6.21 -40.82 -0.25 9.92 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 32 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 33 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 34 H 0.07 0.59 5.90 -51.93 -0.31 0.28 16 35 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.21 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.22 1.38 4.97 -52.48 -0.26 1.12 16 38 H 0.09 1.84 7.71 -51.93 -0.40 1.44 16 39 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -34.53 322.00 -6.14 -40.67 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.28 Total: 6.60 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -0.73 Total: -1.65 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.13 Total: -55.55 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.17 Total: -12.41 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.53 -6.14 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500314561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.039 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds