Wall clock time and date at job start Tue Mar 31 2020 00:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.80023 * 2 1 4 4 N 1.46502 * 109.46920 * 56.70345 * 3 2 1 5 5 C 1.36945 * 119.99859 * 179.97438 * 4 3 2 6 6 H 1.07994 * 119.99812 * 0.02562 * 5 4 3 7 7 C 1.38809 * 120.00029 * 179.97438 * 5 4 3 8 8 N 1.31622 * 119.99876 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99865 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47006 * 60.00862 * 9 7 5 11 11 H 1.48505 * 109.46812 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47558 * 300.00411 * 9 7 5 13 13 C 1.54608 * 110.74226 * 236.70807 * 2 1 3 14 14 C 1.54005 * 105.04323 * 263.51251 * 13 2 1 15 15 N 1.47478 * 107.08511 * 1.30529 * 14 13 2 16 16 C 1.34780 * 127.03331 * 154.51798 * 15 14 13 17 17 O 1.21615 * 119.99645 * 185.65540 * 16 15 14 18 18 C 1.47378 * 120.00444 * 5.65226 * 16 15 14 19 19 C 1.47019 * 127.19465 * 187.24115 * 18 16 15 20 20 C 1.34178 * 105.95215 * 180.09590 * 19 18 16 21 21 O 1.34216 * 109.12604 * 359.65721 * 20 19 18 22 22 C 1.33650 * 110.90644 * 0.22727 * 21 20 19 23 23 C 1.48117 * 105.93447 * 334.77947 * 15 14 13 24 24 H 1.09004 * 109.46854 * 183.28693 * 1 2 3 25 25 H 1.08994 * 109.47425 * 303.29236 * 1 2 3 26 26 H 1.08999 * 109.46653 * 63.29447 * 1 2 3 27 27 H 1.08993 * 109.47208 * 176.70237 * 3 2 1 28 28 H 1.08996 * 109.47280 * 296.70965 * 3 2 1 29 29 H 0.96996 * 120.00070 * 0.02562 * 4 3 2 30 30 H 0.97003 * 119.99866 * 179.97438 * 8 7 5 31 31 H 1.08996 * 110.33057 * 144.62446 * 13 2 1 32 32 H 1.08995 * 110.41592 * 22.44866 * 13 2 1 33 33 H 1.08997 * 109.91530 * 241.94400 * 14 13 2 34 34 H 1.09003 * 110.07438 * 120.76112 * 14 13 2 35 35 H 1.07996 * 127.02120 * 0.02562 * 19 18 16 36 36 H 1.07999 * 125.44010 * 179.97438 * 20 19 18 37 37 H 1.08004 * 125.80090 * 179.97438 * 22 21 20 38 38 H 1.08996 * 110.66700 * 157.50703 * 23 15 14 39 39 H 1.09004 * 110.65967 * 280.62607 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0734 1.4303 0.0000 4 7 1.5379 2.1560 1.1545 5 6 1.8880 3.4633 1.3640 6 1 2.5585 3.9593 0.6779 7 6 1.3803 4.1511 2.4575 8 7 0.5627 3.5467 3.2934 9 14 1.8584 5.9341 2.7436 10 1 1.4375 6.7525 1.5782 11 1 1.1873 6.4359 3.9697 12 1 3.3308 6.0311 2.9108 13 6 2.0776 -0.7936 -1.2086 14 6 2.3763 -2.2014 -0.6601 15 7 1.9871 -2.2038 0.7624 16 6 1.6221 -3.2695 1.5023 17 8 1.2261 -3.1120 2.6413 18 6 1.7028 -4.6257 0.9311 19 6 1.2130 -5.8743 1.5333 20 6 1.5069 -6.8467 0.6566 21 8 2.1152 -6.3070 -0.4111 22 6 2.2426 -4.9841 -0.2694 23 6 2.0733 -0.7945 1.2099 24 1 -0.3633 -1.0260 0.0589 25 1 -0.3634 0.5641 0.8589 26 1 -0.3632 0.4618 -0.9181 27 1 3.1614 1.4056 0.0591 28 1 1.7706 1.9340 -0.9180 29 1 0.9360 1.7104 1.7709 30 1 0.2082 4.0272 4.0579 31 1 2.9911 -0.3314 -1.5827 32 1 1.3294 -0.8463 -1.9994 33 1 3.4403 -2.4185 -0.7543 34 1 1.7962 -2.9461 -1.2051 35 1 0.7188 -5.9861 2.4870 36 1 1.2844 -7.8954 0.7868 37 1 2.6963 -4.3129 -0.9837 38 1 1.4489 -0.6309 2.0881 39 1 3.1077 -0.5187 1.4153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500314561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:24 Heat of formation + Delta-G solvation = -21.186928 kcal Electronic energy + Delta-G solvation = -21687.649724 eV Core-core repulsion = 18403.686737 eV Total energy + Delta-G solvation = -3283.962987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.52 seconds Orbital eigenvalues (eV) -43.50150 -41.19979 -39.13868 -36.52441 -34.56799 -33.66817 -32.21717 -30.99836 -30.35385 -27.95696 -27.30259 -25.55493 -23.98950 -23.13959 -22.24852 -20.83605 -20.18811 -19.25014 -18.29249 -17.58682 -17.29826 -16.91244 -16.61550 -16.36796 -15.56332 -15.48413 -15.30635 -15.07546 -14.63407 -14.47767 -13.94298 -13.88789 -13.66187 -13.48586 -13.25354 -13.01525 -12.84031 -12.73623 -12.49420 -12.20510 -12.06862 -11.71319 -11.50041 -11.41724 -11.19256 -10.91118 -10.86803 -9.81434 -9.71591 -8.96853 -7.92744 -5.21574 0.33596 1.11410 1.46992 1.50560 1.56640 1.76333 2.12278 2.24744 2.57339 3.33140 3.41460 3.60170 3.65513 3.76117 3.86474 4.01298 4.19027 4.24204 4.31383 4.38475 4.50979 4.59868 4.68832 4.73867 4.77657 4.84352 4.94033 5.00581 5.05398 5.08174 5.14054 5.29066 5.32302 5.36846 5.46326 5.52119 5.98358 6.28586 6.48687 7.05238 7.34856 8.12926 8.33821 9.30835 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036729 B = 0.003656 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.161032 B = 7656.431465 C = 8111.763664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C 0.167 3.833 4 N -0.746 5.746 5 C -0.242 4.242 6 H 0.081 0.919 7 C -0.080 4.080 8 N -0.973 5.973 9 Si 0.975 3.025 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.277 1.277 13 C -0.112 4.112 14 C 0.083 3.917 15 N -0.613 5.613 16 C 0.591 3.409 17 O -0.598 6.598 18 C -0.265 4.265 19 C -0.205 4.205 20 C -0.015 4.015 21 O -0.172 6.172 22 C 0.039 3.961 23 C 0.123 3.877 24 H 0.050 0.950 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.372 0.628 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.251 0.749 37 H 0.253 0.747 38 H 0.041 0.959 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -21.246 -15.149 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C 0.041 3.959 4 N -0.389 5.389 5 C -0.374 4.374 6 H 0.099 0.901 7 C -0.272 4.272 8 N -0.624 5.624 9 Si 0.804 3.196 10 H -0.201 1.201 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.150 4.150 14 C -0.038 4.038 15 N -0.345 5.345 16 C 0.383 3.617 17 O -0.481 6.481 18 C -0.269 4.269 19 C -0.225 4.225 20 C -0.080 4.080 21 O -0.067 6.067 22 C -0.032 4.032 23 C 0.000 4.000 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.204 0.796 30 H 0.058 0.942 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.267 0.733 37 H 0.268 0.732 38 H 0.060 0.940 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.085 -21.269 -14.808 26.410 hybrid contribution -0.502 1.372 1.661 2.212 sum 4.583 -19.896 -13.147 24.284 Atomic orbital electron populations 1.21614 0.94311 1.00398 1.01637 1.21673 0.95821 0.94414 0.95482 1.20831 0.95851 0.89378 0.89884 1.42675 1.56698 1.10538 1.29017 1.19650 1.21834 0.89177 1.06736 0.90148 1.25607 1.00787 1.02639 0.98161 1.69846 1.37889 1.37935 1.16765 0.85190 0.77634 0.80067 0.76733 1.20129 1.22649 1.20317 1.22601 1.03544 0.92799 0.96100 1.22806 1.02334 0.99461 0.79165 1.48685 1.66140 1.06504 1.13210 1.17475 0.76242 0.83721 0.84216 1.90776 1.49602 1.86657 1.21031 1.21415 1.12749 0.93343 0.99398 1.22951 1.06128 0.90681 1.02692 1.24611 0.98381 1.00524 0.84519 1.83866 1.61158 1.20906 1.40741 1.25594 0.98298 0.82422 0.96838 1.22299 1.00514 0.79710 0.97489 0.93089 0.95424 0.91080 0.95199 0.94845 0.79554 0.94230 0.87869 0.88036 0.87799 0.87705 0.83343 0.73300 0.73202 0.94045 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.31 71.98 0.60 -3.44 16 2 C -0.07 -2.19 0.65 -51.09 -0.03 -2.23 16 3 C 0.17 6.26 5.11 86.38 0.44 6.70 16 4 N -0.75 -38.02 5.16 -343.46 -1.77 -39.79 16 5 C -0.24 -13.58 9.99 84.03 0.84 -12.74 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 8 N -0.97 -61.94 13.06 21.65 0.28 -61.66 16 9 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 C -0.11 -2.00 6.09 31.48 0.19 -1.81 16 14 C 0.08 1.31 5.25 86.53 0.45 1.76 16 15 N -0.61 -17.32 3.19 -814.00 -2.60 -19.92 16 16 C 0.59 19.78 7.88 86.65 0.68 20.46 16 17 O -0.60 -26.75 17.18 -4.08 -0.07 -26.82 16 18 C -0.26 -6.49 6.25 -18.99 -0.12 -6.61 16 19 C -0.20 -4.46 11.02 23.65 0.26 -4.20 16 20 C -0.01 -0.20 12.03 66.89 0.80 0.61 16 21 O -0.17 -2.44 10.52 4.48 0.05 -2.39 16 22 C 0.04 0.58 10.51 67.39 0.71 1.29 16 23 C 0.12 4.27 5.68 86.61 0.49 4.76 16 24 H 0.05 1.59 8.07 -2.39 -0.02 1.57 16 25 H 0.03 1.13 6.69 -2.39 -0.02 1.12 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.37 20.85 6.21 -92.71 -0.58 20.28 16 30 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.10 1.48 7.85 -2.39 -0.02 1.46 16 32 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 33 H 0.10 1.03 7.86 -2.39 -0.02 1.01 16 34 H 0.11 1.06 5.90 -2.39 -0.01 1.05 16 35 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.25 1.71 4.97 -2.91 -0.01 1.70 16 38 H 0.04 1.84 7.71 -2.39 -0.02 1.82 16 39 H 0.07 2.54 8.01 -2.39 -0.02 2.53 16 Total: -1.00 -82.06 322.00 4.19 -77.87 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.49 Total: 23.37 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 5.79 Total: 0.32 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -4.09 Total: -121.37 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.02 Total: -29.22 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -82.06 4.19 -77.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500314561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.681 kcal (2) G-P(sol) polarization free energy of solvation -82.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.52 seconds