Wall clock time and date at job start Mon Mar 30 2020 23:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.46858 * 294.99796 * 11 10 9 13 13 C 1.53000 * 109.47590 * 174.99990 * 11 10 9 14 14 O 1.42897 * 109.46813 * 304.99938 * 13 11 10 15 15 N 1.46498 * 109.47267 * 54.99611 * 11 10 9 16 16 C 1.36936 * 119.99991 * 205.00270 * 15 11 10 17 17 H 1.08001 * 120.00239 * 359.97438 * 16 15 11 18 18 C 1.38814 * 119.99776 * 180.02562 * 16 15 11 19 19 N 1.31618 * 119.99730 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00277 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47113 * 90.00070 * 20 18 16 22 22 H 1.48497 * 109.47414 * 210.00116 * 20 18 16 23 23 H 1.48501 * 109.46971 * 330.00271 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.47717 * 300.00232 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 1.09000 * 109.46780 * 64.99667 * 13 11 10 35 35 H 1.08996 * 109.47505 * 184.99285 * 13 11 10 36 36 H 0.96702 * 113.99744 * 180.02562 * 14 13 11 37 37 H 0.96993 * 119.99755 * 25.00691 * 15 11 10 38 38 H 0.97005 * 119.99888 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1995 -2.9469 -0.9477 13 6 8.6925 -4.7640 0.0990 14 8 8.2460 -5.4741 1.2559 15 7 8.2555 -2.5838 1.1172 16 6 9.3680 -1.7868 1.0696 17 1 10.0009 -1.7946 0.1945 18 6 9.6829 -0.9695 2.1466 19 7 10.7520 -0.2031 2.1006 20 14 8.5887 -0.9564 3.6605 21 1 9.0614 -1.9849 4.6218 22 1 8.6451 0.3823 4.3005 23 1 7.1898 -1.2564 3.2627 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3095 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 8.5149 -5.3694 -0.7899 35 1 9.7586 -4.5556 0.1895 36 1 8.6920 -6.3209 1.3941 37 1 7.6874 -2.5770 1.9033 38 1 10.9718 0.3683 2.8531 39 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507172579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:37 Heat of formation + Delta-G solvation = -52.421818 kcal Electronic energy + Delta-G solvation = -21373.939363 eV Core-core repulsion = 18088.621930 eV Total energy + Delta-G solvation = -3285.317433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09572 -38.47566 -37.19930 -35.05077 -33.73929 -32.87875 -31.56834 -31.04753 -28.92103 -27.05916 -25.61973 -23.56089 -22.98996 -21.85758 -20.21133 -19.81515 -18.11863 -17.27829 -16.90614 -16.19508 -15.89726 -15.21310 -14.87741 -14.71908 -14.42639 -14.05195 -13.85190 -13.58420 -13.45825 -13.16723 -12.96502 -12.78821 -12.43737 -12.39583 -12.01680 -11.65981 -11.59097 -11.12884 -11.02272 -10.88169 -10.71850 -10.14701 -9.75269 -9.67479 -9.47462 -9.04943 -9.02385 -8.82540 -8.64935 -7.38109 -5.86013 -3.22504 0.86307 1.29547 2.99124 3.34649 3.40568 3.42487 3.45830 3.89024 4.53205 4.67173 4.73538 4.79845 4.83202 5.08382 5.16894 5.19469 5.26303 5.34819 5.42175 5.43236 5.54033 5.62901 5.79998 5.85398 5.90121 5.91848 5.97179 6.19044 6.30670 6.34938 6.37022 6.42906 6.59577 6.75652 6.85278 7.81760 7.87625 8.09692 8.32933 8.45332 9.10928 9.83632 10.03776 11.31553 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.005283 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.055645 B = 5298.342164 C = 6503.614913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.100 4.100 4 C -0.122 4.122 5 C -0.089 4.089 6 C -0.127 4.127 7 C 0.553 3.447 8 O -0.549 6.549 9 N -0.711 5.711 10 C 0.115 3.885 11 C 0.171 3.829 12 H 0.075 0.925 13 C 0.060 3.940 14 O -0.565 6.565 15 N -0.739 5.739 16 C -0.252 4.252 17 H 0.091 0.909 18 C 0.012 3.988 19 N -0.930 5.930 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.276 1.276 24 C -0.064 4.064 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.408 0.592 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.366 0.634 37 H 0.366 0.634 38 H 0.260 0.740 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 -0.765 -6.074 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.101 4.101 3 C -0.118 4.118 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.130 4.130 7 C 0.340 3.660 8 O -0.429 6.429 9 N -0.363 5.363 10 C -0.009 4.009 11 C 0.060 3.940 12 H 0.093 0.907 13 C -0.022 4.022 14 O -0.369 6.369 15 N -0.382 5.382 16 C -0.381 4.381 17 H 0.109 0.891 18 C -0.185 4.185 19 N -0.577 5.577 20 Si 0.712 3.288 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.202 1.202 24 C -0.082 4.082 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.246 0.754 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.212 0.788 37 H 0.200 0.800 38 H 0.070 0.930 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.028 -0.852 -6.096 17.169 hybrid contribution 0.226 0.002 1.155 1.177 sum -15.802 -0.850 -4.941 16.578 Atomic orbital electron populations 1.20779 0.90843 1.02826 1.02440 1.19878 0.96315 0.92863 1.01028 1.21224 0.94321 0.97543 0.98703 1.21129 0.94187 0.98219 1.00492 1.21482 1.00482 0.91806 0.96959 1.20024 0.94354 0.93168 1.05443 1.18268 0.82358 0.88676 0.76692 1.90727 1.68740 1.32516 1.50902 1.45963 1.05727 1.11027 1.73571 1.21631 0.91739 0.85130 1.02427 1.20580 0.90518 0.89847 0.93016 0.90743 1.22985 0.99268 0.93746 0.86163 1.86521 1.66287 1.36464 1.47595 1.42738 1.30434 1.48739 1.16324 1.19051 1.00802 1.15567 1.02714 0.89117 1.24628 0.97330 0.98730 0.97788 1.69700 1.26637 1.29478 1.31885 0.86595 0.80742 0.76987 0.84449 1.20993 1.21788 1.20232 1.21126 0.92654 0.98246 0.96222 0.91118 0.91501 0.91384 0.85784 0.85234 0.85023 0.75429 0.90495 0.91522 0.95062 0.92727 0.78843 0.80047 0.92961 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.10 -1.13 5.87 -104.68 -0.61 -1.74 16 3 C -0.10 -1.06 9.69 -39.49 -0.38 -1.44 16 4 C -0.12 -1.42 10.03 -39.64 -0.40 -1.82 16 5 C -0.09 -1.21 9.54 -39.19 -0.37 -1.59 16 6 C -0.13 -1.92 5.87 -104.97 -0.62 -2.54 16 7 C 0.55 9.68 7.77 -12.33 -0.10 9.58 16 8 O -0.55 -10.99 16.35 5.32 0.09 -10.90 16 9 N -0.71 -12.10 5.34 -61.25 -0.33 -12.43 16 10 C 0.11 1.98 5.12 -4.04 -0.02 1.96 16 11 C 0.17 3.11 2.84 -67.93 -0.19 2.92 16 12 H 0.07 1.31 8.08 -51.92 -0.42 0.89 16 13 C 0.06 0.98 6.86 37.16 0.25 1.24 16 14 O -0.56 -9.45 12.64 -35.23 -0.45 -9.89 16 15 N -0.74 -16.57 4.31 -53.42 -0.23 -16.80 16 16 C -0.25 -6.66 10.41 -15.06 -0.16 -6.82 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 19 N -0.93 -28.13 13.97 55.49 0.78 -27.36 16 20 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 24 C -0.06 -0.86 9.24 -39.19 -0.36 -1.22 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.77 6.41 -52.49 -0.34 1.43 16 31 H 0.41 6.81 6.17 -40.82 -0.25 6.56 16 32 H 0.08 1.47 7.39 -51.93 -0.38 1.08 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.37 4.34 9.12 45.56 0.42 4.75 16 37 H 0.37 8.57 5.66 -40.82 -0.23 8.34 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.13 1.79 7.65 -52.49 -0.40 1.39 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -33.14 331.54 -7.13 -40.27 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -4.58 Total: 16.68 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.70 Total: -1.79 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.22 Total: -56.58 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.36 Total: -20.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.14 -7.13 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507172579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.154 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds