Wall clock time and date at job start Mon Mar 30 2020 23:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.46858 * 294.99796 * 11 10 9 13 13 C 1.53000 * 109.47590 * 174.99990 * 11 10 9 14 14 O 1.42897 * 109.46813 * 304.99938 * 13 11 10 15 15 N 1.46498 * 109.47267 * 54.99611 * 11 10 9 16 16 C 1.36936 * 119.99991 * 205.00270 * 15 11 10 17 17 H 1.08001 * 120.00239 * 359.97438 * 16 15 11 18 18 C 1.38814 * 119.99776 * 180.02562 * 16 15 11 19 19 N 1.31618 * 119.99730 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00277 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47113 * 90.00070 * 20 18 16 22 22 H 1.48497 * 109.47414 * 210.00116 * 20 18 16 23 23 H 1.48501 * 109.46971 * 330.00271 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09006 * 109.47717 * 300.00232 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 1.09000 * 109.46780 * 64.99667 * 13 11 10 35 35 H 1.08996 * 109.47505 * 184.99285 * 13 11 10 36 36 H 0.96702 * 113.99744 * 180.02562 * 14 13 11 37 37 H 0.96993 * 119.99755 * 25.00691 * 15 11 10 38 38 H 0.97005 * 119.99888 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1995 -2.9469 -0.9477 13 6 8.6925 -4.7640 0.0990 14 8 8.2460 -5.4741 1.2559 15 7 8.2555 -2.5838 1.1172 16 6 9.3680 -1.7868 1.0696 17 1 10.0009 -1.7946 0.1945 18 6 9.6829 -0.9695 2.1466 19 7 10.7520 -0.2031 2.1006 20 14 8.5887 -0.9564 3.6605 21 1 9.0614 -1.9849 4.6218 22 1 8.6451 0.3823 4.3005 23 1 7.1898 -1.2564 3.2627 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3095 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 8.5149 -5.3694 -0.7899 35 1 9.7586 -4.5556 0.1895 36 1 8.6920 -6.3209 1.3941 37 1 7.6874 -2.5770 1.9033 38 1 10.9718 0.3683 2.8531 39 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507172579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:36 Heat of formation + Delta-G solvation = -77.497333 kcal Electronic energy + Delta-G solvation = -21375.026719 eV Core-core repulsion = 18088.621930 eV Total energy + Delta-G solvation = -3286.404789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29354 -39.61956 -38.63450 -36.49639 -35.36764 -33.98611 -33.23847 -32.14045 -30.57514 -27.90355 -26.87275 -25.36977 -24.28958 -22.80507 -21.73646 -21.07546 -19.91466 -18.60001 -18.29958 -17.45526 -17.03847 -16.68911 -16.22071 -16.08734 -15.81644 -15.26537 -15.04589 -14.88304 -14.63618 -14.60340 -14.42529 -14.20907 -13.92441 -13.26242 -13.05844 -12.95395 -12.80000 -12.66067 -12.54653 -12.37064 -12.02650 -11.90845 -11.79928 -11.18204 -10.98067 -10.76202 -10.23324 -9.90494 -9.69119 -9.35249 -8.02549 -5.34937 -0.17010 0.35575 1.35903 1.40136 1.44497 1.80324 2.14533 2.46638 2.83921 3.29364 3.43190 3.66164 3.67700 3.80130 3.92275 3.94416 4.15549 4.34856 4.35245 4.39267 4.50090 4.57730 4.67176 4.78938 4.84003 4.87614 4.95075 4.98279 5.13443 5.24888 5.30085 5.41097 5.42013 5.54935 5.76872 5.94077 6.21061 6.46628 7.01377 7.07356 7.10470 7.81333 8.00595 9.18320 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.005283 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.055645 B = 5298.342164 C = 6503.614913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.099 4.099 3 C -0.091 4.091 4 C -0.124 4.124 5 C -0.102 4.102 6 C -0.151 4.151 7 C 0.551 3.449 8 O -0.582 6.582 9 N -0.711 5.711 10 C 0.125 3.875 11 C 0.166 3.834 12 H 0.082 0.918 13 C 0.066 3.934 14 O -0.584 6.584 15 N -0.741 5.741 16 C -0.223 4.223 17 H 0.070 0.930 18 C -0.049 4.049 19 N -0.977 5.977 20 Si 0.941 3.059 21 H -0.290 1.290 22 H -0.295 1.295 23 H -0.261 1.261 24 C -0.078 4.078 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.160 0.840 29 H 0.152 0.848 30 H 0.127 0.873 31 H 0.410 0.590 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.388 0.612 37 H 0.362 0.638 38 H 0.257 0.743 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.631 -0.285 -6.407 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.109 4.109 4 C -0.142 4.142 5 C -0.121 4.121 6 C -0.154 4.154 7 C 0.339 3.661 8 O -0.464 6.464 9 N -0.362 5.362 10 C 0.001 3.999 11 C 0.057 3.943 12 H 0.100 0.900 13 C -0.015 4.015 14 O -0.391 6.391 15 N -0.384 5.384 16 C -0.354 4.354 17 H 0.088 0.912 18 C -0.241 4.241 19 N -0.628 5.628 20 Si 0.770 3.230 21 H -0.217 1.217 22 H -0.222 1.222 23 H -0.187 1.187 24 C -0.097 4.097 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.177 0.823 29 H 0.170 0.830 30 H 0.145 0.855 31 H 0.247 0.753 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.237 0.763 37 H 0.195 0.805 38 H 0.066 0.934 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.213 -0.420 -6.457 19.328 hybrid contribution 0.852 -0.189 1.156 1.448 sum -17.361 -0.610 -5.301 18.162 Atomic orbital electron populations 1.20855 0.88472 1.04071 1.03386 1.20250 0.98034 0.92142 0.99461 1.21656 0.94028 0.98697 0.96491 1.21452 0.94989 0.98219 0.99551 1.21536 1.00435 0.92220 0.97875 1.19947 0.94979 0.92423 1.08050 1.18694 0.82328 0.89302 0.75729 1.90694 1.69247 1.33841 1.52602 1.45974 1.05814 1.10980 1.73431 1.21501 0.90764 0.85261 1.02378 1.20833 0.91498 0.90279 0.91698 0.89979 1.22790 0.97547 0.93351 0.87786 1.86465 1.66878 1.37994 1.47773 1.42719 1.29174 1.49093 1.17440 1.19032 1.00682 1.14417 1.01261 0.91229 1.25223 0.98803 0.99429 1.00646 1.69838 1.28885 1.31283 1.32763 0.85631 0.79899 0.76326 0.81103 1.21700 1.22167 1.18662 1.21230 0.92179 0.99190 0.97085 0.90176 0.89333 0.91163 0.82281 0.83042 0.85531 0.75274 0.92219 0.89828 0.91205 0.94471 0.76319 0.80481 0.93403 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.75 16 2 C -0.10 -1.98 5.87 -19.90 -0.12 -2.09 16 3 C -0.09 -1.62 9.69 22.33 0.22 -1.40 16 4 C -0.12 -2.60 10.03 22.23 0.22 -2.37 16 5 C -0.10 -2.70 9.54 22.53 0.21 -2.49 16 6 C -0.15 -4.54 5.87 -20.09 -0.12 -4.66 16 7 C 0.55 19.37 7.77 86.79 0.67 20.05 16 8 O -0.58 -23.53 16.35 -3.87 -0.06 -23.60 16 9 N -0.71 -24.00 5.34 -465.97 -2.49 -26.49 16 10 C 0.13 4.19 5.12 86.38 0.44 4.63 16 11 C 0.17 5.84 2.84 44.99 0.13 5.97 16 12 H 0.08 2.79 8.08 -2.38 -0.02 2.77 16 13 C 0.07 2.06 6.86 71.98 0.49 2.55 16 14 O -0.58 -18.51 12.64 -148.98 -1.88 -20.40 16 15 N -0.74 -32.77 4.31 -322.93 -1.39 -34.17 16 16 C -0.22 -11.84 10.41 84.03 0.87 -10.97 16 17 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 18 C -0.05 -2.76 5.50 84.86 0.47 -2.29 16 19 N -0.98 -60.25 13.97 21.65 0.30 -59.95 16 20 Si 0.94 45.66 27.74 68.60 1.90 47.56 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 22 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.26 -11.86 6.52 99.48 0.65 -11.21 16 24 C -0.08 -2.06 9.24 22.53 0.21 -1.85 16 25 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 28 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.13 3.38 6.41 -2.91 -0.02 3.36 16 31 H 0.41 13.59 6.17 -92.71 -0.57 13.02 16 32 H 0.06 2.24 7.39 -2.38 -0.02 2.22 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.39 8.40 9.12 -74.06 -0.68 7.72 16 37 H 0.36 16.63 5.66 -92.71 -0.52 16.11 16 38 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 39 H 0.13 3.42 7.65 -2.91 -0.02 3.40 16 Total: -1.00 -72.05 331.54 0.05 -71.99 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: -0.75 Total: 40.72 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 4.42 Total: 4.32 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -3.58 Total: -120.60 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.95 Total: -43.99 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -72.05 0.05 -71.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507172579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.504 kcal (2) G-P(sol) polarization free energy of solvation -72.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds