Wall clock time and date at job start Mon Mar 30 2020 23:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38375 * 119.92694 * 2 1 4 4 C 1.38340 * 120.29176 * 179.76925 * 3 2 1 5 5 C 1.37977 * 120.14340 * 0.50908 * 4 3 2 6 6 C 1.39554 * 119.85387 * 359.74876 * 5 4 3 7 7 C 1.47847 * 120.14539 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99959 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99772 * 0.02562 * 7 6 5 10 10 C 1.46497 * 119.99571 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.47344 * 64.99466 * 11 10 9 13 13 C 1.52996 * 109.47463 * 185.00381 * 11 10 9 14 14 O 1.42893 * 109.47466 * 54.99231 * 13 11 10 15 15 N 1.46509 * 109.46818 * 304.99783 * 11 10 9 16 16 C 1.36937 * 119.99708 * 154.99760 * 15 11 10 17 17 H 1.07991 * 120.00633 * 0.02562 * 16 15 11 18 18 C 1.38813 * 119.99295 * 180.02562 * 16 15 11 19 19 N 1.31615 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47486 * 89.99454 * 20 18 16 22 22 H 1.48495 * 109.47258 * 210.00092 * 20 18 16 23 23 H 1.48502 * 109.47143 * 329.99700 * 20 18 16 24 24 C 1.37937 * 119.92606 * 180.28266 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.71897 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71494 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72125 * 1 2 3 28 28 H 1.08007 * 119.85448 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.92587 * 180.25865 * 4 3 2 30 30 H 1.07998 * 120.07133 * 179.72192 * 5 4 3 31 31 H 0.96991 * 120.00377 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47333 * 299.99984 * 10 9 7 33 33 H 1.08998 * 109.47624 * 60.00227 * 10 9 7 34 34 H 1.08998 * 109.47710 * 175.00105 * 13 11 10 35 35 H 1.09008 * 109.46560 * 294.99318 * 13 11 10 36 36 H 0.96703 * 114.00556 * 180.02562 * 14 13 11 37 37 H 0.97002 * 119.99663 * 335.00045 * 15 11 10 38 38 H 0.97009 * 119.99947 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.07445 * 359.95257 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5808 1.2081 0.0048 5 6 4.2813 0.0193 -0.0010 6 6 3.5912 -1.1936 -0.0064 7 6 4.3353 -2.4712 -0.0131 8 8 3.7315 -3.5261 -0.0183 9 7 5.6830 -2.4660 -0.0136 10 6 6.4203 -3.7319 -0.0208 11 6 7.9235 -3.4467 -0.0191 12 1 8.1994 -2.9576 0.9150 13 6 8.6925 -4.7626 -0.1525 14 8 8.2460 -5.4593 -1.3175 15 7 8.2556 -2.5708 -1.1456 16 6 9.3681 -1.7743 -1.0888 17 1 10.0009 -1.7921 -0.2139 18 6 9.6823 -0.9441 -2.1560 19 7 8.9114 -0.9227 -3.2225 20 14 11.2003 0.1419 -2.0789 21 1 12.3650 -0.5953 -2.6313 22 1 10.9695 1.3726 -2.8771 23 1 11.4731 0.5118 -0.6668 24 6 2.1952 -1.1954 -0.0059 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5182 28 1 1.6538 2.1325 0.0004 29 1 4.1136 2.1475 0.0090 30 1 5.3612 0.0276 -0.0017 31 1 6.1648 -1.6242 -0.0091 32 1 6.1595 -4.3094 0.8660 33 1 6.1589 -4.2996 -0.9139 34 1 9.7586 -4.5532 -0.2406 35 1 8.5149 -5.3781 0.7294 36 1 8.6914 -6.3049 -1.4650 37 1 7.6873 -2.5550 -1.9316 38 1 9.1312 -0.3428 -3.9684 39 1 1.6552 -2.1307 -0.0097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507172580.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:40 Heat of formation + Delta-G solvation = -55.731188 kcal Electronic energy + Delta-G solvation = -21268.024920 eV Core-core repulsion = 17982.563981 eV Total energy + Delta-G solvation = -3285.460938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97343 -38.34937 -37.04011 -34.89875 -33.62247 -32.80033 -31.42050 -30.88696 -28.35871 -26.95669 -25.49539 -23.75183 -23.01242 -21.76053 -20.10387 -19.67793 -17.77717 -17.18587 -16.61758 -16.07189 -15.82465 -15.08925 -14.77825 -14.64466 -14.29058 -13.92935 -13.79831 -13.46058 -13.38521 -13.20600 -12.86517 -12.72421 -12.32085 -12.10613 -11.82197 -11.56135 -11.40389 -11.03125 -10.88943 -10.86975 -10.56714 -10.11908 -9.80805 -9.61137 -9.35678 -8.99644 -8.93851 -8.72203 -8.50390 -7.05438 -5.82717 -3.13481 0.96978 1.39296 3.10838 3.37684 3.43042 3.45164 3.58609 4.00393 4.51102 4.75984 4.83775 4.92161 4.93906 5.18296 5.26091 5.36248 5.41278 5.48400 5.52111 5.56019 5.63784 5.70880 5.89471 5.94713 6.02646 6.05149 6.06154 6.34368 6.41400 6.46167 6.50559 6.52370 6.74648 6.88984 6.96470 7.60976 7.97054 8.20881 8.33955 8.59616 9.46274 10.01543 10.38294 11.38661 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015365 B = 0.004919 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.867467 B = 5690.412505 C = 7174.401886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.101 4.101 4 C -0.123 4.123 5 C -0.085 4.085 6 C -0.125 4.125 7 C 0.553 3.447 8 O -0.552 6.552 9 N -0.706 5.706 10 C 0.118 3.882 11 C 0.165 3.835 12 H 0.066 0.934 13 C 0.060 3.940 14 O -0.560 6.560 15 N -0.714 5.714 16 C -0.250 4.250 17 H 0.070 0.930 18 C -0.006 4.006 19 N -0.925 5.925 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.064 4.064 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.409 0.591 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.364 0.636 37 H 0.389 0.611 38 H 0.256 0.744 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 1.040 8.457 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.128 4.128 7 C 0.340 3.660 8 O -0.432 6.432 9 N -0.358 5.358 10 C -0.006 4.006 11 C 0.054 3.946 12 H 0.084 0.916 13 C -0.022 4.022 14 O -0.363 6.363 15 N -0.355 5.355 16 C -0.381 4.381 17 H 0.088 0.912 18 C -0.203 4.203 19 N -0.572 5.572 20 Si 0.736 3.264 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.083 4.083 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.246 0.754 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.208 0.792 37 H 0.224 0.776 38 H 0.066 0.934 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.752 0.934 8.434 14.495 hybrid contribution 1.593 0.513 -0.302 1.700 sum -10.159 1.447 8.132 13.093 Atomic orbital electron populations 1.20771 0.90928 1.02850 1.02288 1.19860 0.96250 0.92886 1.01213 1.21202 0.94330 0.97479 0.98887 1.21109 0.94150 0.98191 1.00634 1.21477 1.00510 0.91743 0.96663 1.20028 0.94299 0.93236 1.05195 1.18250 0.82421 0.88607 0.76734 1.90720 1.68793 1.32548 1.51152 1.45922 1.05615 1.11031 1.73215 1.21572 0.91811 0.85089 1.02132 1.20603 0.90642 0.89899 0.93483 0.91645 1.23023 0.98979 0.94259 0.85905 1.86572 1.66112 1.36790 1.46847 1.42389 1.30085 1.46213 1.16851 1.19217 1.01930 1.15722 1.01199 0.91181 1.24743 0.98833 1.00360 0.96410 1.69682 1.38877 1.41983 1.06633 0.86238 0.82902 0.80062 0.77198 1.21754 1.21769 1.20751 1.21123 0.92713 0.98194 0.96276 0.91227 0.91546 0.91393 0.85898 0.85373 0.84976 0.75367 0.92013 0.90461 0.93308 0.95510 0.79152 0.77643 0.93401 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.10 -1.21 5.87 -104.68 -0.61 -1.82 16 3 C -0.10 -1.13 9.69 -39.49 -0.38 -1.51 16 4 C -0.12 -1.51 10.03 -39.64 -0.40 -1.91 16 5 C -0.09 -1.23 9.54 -39.19 -0.37 -1.60 16 6 C -0.12 -1.98 5.87 -104.97 -0.62 -2.60 16 7 C 0.55 10.18 7.77 -12.33 -0.10 10.08 16 8 O -0.55 -11.57 16.35 5.32 0.09 -11.48 16 9 N -0.71 -12.70 5.34 -61.25 -0.33 -13.02 16 10 C 0.12 2.17 5.12 -4.04 -0.02 2.14 16 11 C 0.16 3.15 2.84 -67.93 -0.19 2.96 16 12 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 13 C 0.06 1.04 6.85 37.16 0.25 1.29 16 14 O -0.56 -10.08 12.64 -35.23 -0.45 -10.53 16 15 N -0.71 -16.98 4.51 -53.43 -0.24 -17.22 16 16 C -0.25 -6.51 9.93 -15.06 -0.15 -6.66 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.10 13.06 55.49 0.72 -26.37 16 20 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.06 -0.92 9.24 -39.19 -0.36 -1.28 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.89 6.41 -52.49 -0.34 1.56 16 31 H 0.41 7.26 6.17 -40.82 -0.25 7.01 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.59 7.39 -51.93 -0.38 1.21 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.36 4.71 9.12 45.56 0.42 5.13 16 37 H 0.39 10.34 7.80 -40.82 -0.32 10.02 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.13 1.88 7.65 -52.49 -0.40 1.48 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -32.28 334.65 -7.49 -39.76 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -4.62 Total: 19.11 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.69 Total: -1.78 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.16 Total: -56.61 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.36 Total: -22.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.28 -7.49 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507172580.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.966 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds